mRNA_L-elsbetiae_contig5225.13330.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5225.13330.1
Unique NamemRNA_L-elsbetiae_contig5225.13330.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5225.13330.1 vs. uniprot
Match: D7G8F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F3_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 8.540e-52
Identity = 104/183 (56.83%), Postives = 116/183 (63.39%), Query Frame = 1 
Query:  634 MEEALRALNVPLVAVACAESEIPSALACWCGGXXXXXXXXXXXXXXXXXXXXXXXXXAGMVATAEMLPTEGTVEITIMDECYHPRQLLLSERVKDALRGTGALYAVDSSCVYPVNTNGGGAAXXXXXXXXXXXXAAAVLSPEEFRRAQDGCLPAVLADLTPKPRLSLDSRLQNQMFTTGGGKR 1182
            ME  LRALNVPLVA++C + EIPSAL CWC G                         A   AT +  P EG+  ITIMDECYHP QL LSE+V+DALRGTGALYAVDSSCVYPVNT+GGG                 VLSPEEFR+ QDGCLPAVLADLT +PRL L  +LQNQ F  GGG+R
Sbjct:    1 MEGTLRALNVPLVAISCVDGEIPSALTCWCRGSRDGGAADNSSESDT----------AATGATTKRSPMEGSAHITIMDECYHPTQLSLSEKVRDALRGTGALYAVDSSCVYPVNTSGGGGTRAGVGAATGG--VTGVLSPEEFRQTQDGCLPAVLADLTIRPRLPLKPQLQNQTFV-GGGER 170
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BLAST of mRNA_L-elsbetiae_contig5225.13330.1 vs. uniprot
Match: A0A6H5K9X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.090e-38
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 1 
Query:  841 EGTVEITIMDECYHPRQLLLSERVKDALRGTGALYAVDSSCVYPVNTNGGGAAXXXXXXXXXXXXAAAVLSPEEFRRAQDGCLPAVLADLTPKPRLSLDSRLQNQMFTTGGGKR 1182
            EG+  ITIMDECYHP QL LSE+ +DALRGTGALYAVDSSCVYPVNT+GGG A               VLSPE+FR+ QDGCLPAVLADLT +PRL L  +LQ QMF  GGG+R
Sbjct:    2 EGSAHITIMDECYHPTQLSLSEKARDALRGTGALYAVDSSCVYPVNTSGGGGARAGVAAAMGS--VTGVLSPEDFRQTQDGCLPAVLADLTMRPRLPLKPQLQKQMFV-GGGER 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5225.13330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8F3_ECTSI8.540e-5256.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9X8_9PHAE1.090e-3866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5225contigL-elsbetiae_contig5225:190..3370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1185
Cds size1185
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5225.13330.1prot_L-elsbetiae_contig5225.13330.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5225 190..3370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816536.923817-CDS-L-elsbetiae_contig5225:189..2971622816536.923817-CDS-L-elsbetiae_contig5225:189..297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 190..297 -
1691683630.9632025-CDS-L-elsbetiae_contig5225:189..2971691683630.9632025-CDS-L-elsbetiae_contig5225:189..297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 190..297 -
1622816536.9399014-CDS-L-elsbetiae_contig5225:895..13211622816536.9399014-CDS-L-elsbetiae_contig5225:895..1321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 896..1321 -
1691683630.9726522-CDS-L-elsbetiae_contig5225:895..13211691683630.9726522-CDS-L-elsbetiae_contig5225:895..1321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 896..1321 -
1622816536.9537387-CDS-L-elsbetiae_contig5225:1695..18841622816536.9537387-CDS-L-elsbetiae_contig5225:1695..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 1696..1884 -
1691683630.9819229-CDS-L-elsbetiae_contig5225:1695..18841691683630.9819229-CDS-L-elsbetiae_contig5225:1695..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 1696..1884 -
1622816536.9663308-CDS-L-elsbetiae_contig5225:2379..24871622816536.9663308-CDS-L-elsbetiae_contig5225:2379..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 2380..2487 -
1691683630.9911592-CDS-L-elsbetiae_contig5225:2379..24871691683630.9911592-CDS-L-elsbetiae_contig5225:2379..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 2380..2487 -
1622816536.9771125-CDS-L-elsbetiae_contig5225:3016..33701622816536.9771125-CDS-L-elsbetiae_contig5225:3016..3370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 3017..3370 -
1691683631.001893-CDS-L-elsbetiae_contig5225:3016..33701691683631.001893-CDS-L-elsbetiae_contig5225:3016..3370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5225 3017..3370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5225.13330.1

>prot_L-elsbetiae_contig5225.13330.1 ID=prot_L-elsbetiae_contig5225.13330.1|Name=mRNA_L-elsbetiae_contig5225.13330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=395bp
ASASSRAQVTSGGGGGGVSIGAASLVSSFLKRGSAASMPSPTGMPHVHAA
SPPKTPTSLASLVAGVPPGSAGAGFRTPTAGTDNGFPRRGGDRFFHSAWP
PSLKKRRRILYYPKPNNPVGRRILYWVRANYRVKDNLGLSVAFWLSAQTQ
LPLQAVTFVDPAIGRSMSSCDTASGSDEKTMRLQGARNAQHGAERHELPF
GMAVEASALCEMEEALRALNVPLVAVACAESEIPSALACWCGGGSSSTPA
AARPPSAGSTVAGAPPAAAGMVATAEMLPTEGTVEITIMDECYHPRQLLL
SERVKDALRGTGALYAVDSSCVYPVNTNGGGAAGGQAGAGASTGGAAAVL
SPEEFRRAQDGCLPAVLADLTPKPRLSLDSRLQNQMFTTGGGKR*
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mRNA from alignment at L-elsbetiae_contig5225:190..3370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5225.13330.1 ID=mRNA_L-elsbetiae_contig5225.13330.1|Name=mRNA_L-elsbetiae_contig5225.13330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3181bp|location=Sequence derived from alignment at L-elsbetiae_contig5225:190..3370- (Laminarionema elsbetiae ELsaHSoW15)
GCATCAGCGAGTTCCCGGGCACAAGTAACGTCAGGCGGCGGTGGCGGCGG
CGTGTCCATAGGAGCGGCATCCTTGGTGAGCTCGTTCTTGAAACGGGGAT
CGGCGGCATCAATGCCGTCACCAACAGGCATGCCGCACGTTCACGCCGCC
TCGCCACCCAAGACCCCGACTTCCTTGGCCTCTCTTGTCGCTGGCGTCCC
GCCTGGGAGCGCCGGAGCAGGGTTCCGTACTCCGACCGCCGGAACGGATA
ACGGCTTTCCACGCCGAGGGGGCGATCGATTCTTCCACAGCGCGTGGCCG
CCGAGCCTGAAAAAGAGGCGGCGAATTCTGTACTATCCTAAGCCCAACAA
CCCGGTGAGAGGTTAAGGGGGGACAAGTACGCAGCAACAAGGGTCAGTTC
TGTAGGGGCGGGCTCTACATATCATTGCTTTTGCTGTGCGAGCCCAGGAA
AATGTGGAAGGGTGGTATCGTTGCCGCGTTCTTGGTTAGCGGCGCCGTGA
CTTTTCAACGGTACGGTAACTTTTGAACGCCATGGTACAACTTTTGAACG
CTACATACATATAGGTGCACCGGTATTGCCAACTGTGTGTGTGTCGCGAA
GGTTATCGCCTCCATGCGTCCAGCGATAAATTATGCCTTTGTCTTCTCAA
CTTAATTTCATGCTTTGAAGCGTATTCTGGGCTTCGGCAGTCGGACGATG
ATACGTTTCCGACGAGCATGGTTGAATCCATATGGGTGGTTCACTGGTTT
CAACCTTGTGTTGTGGCTGTCTGGAACATCGGCCATGCCGTACCCTTTCG
CCAGCGCCAGAGATCAAGCACAACTCAGGCCTTGAAAGCGCCTTTCCTGT
TTCTTTTCGTCGTGTCCCCTTAAAAAAAAAAAGGTTGGCAGGCGGATATT
GTACTGGGTGCGGGCGAACTATCGCGTGAAAGACAATCTCGGTCTTTCGG
TTGCTTTCTGGCTAAGCGCGCAAACGCAGCTGCCCTTGCAGGTGAGTTGG
GCGGGAGAGATAACAAGCCTTGTTTTGGGTCGTCTCGCGTGTGTTGTCGG
CCTCAAATACGAGGTGCGTGGAGGTGTAACCTAGCAACCTTACCTGGGTG
GAGCGATTCGAGCAGGCAGCTGGGGGAAAGGAAGGTCGGTTCCGTGGCGC
TTGTGTAGCATTTGTTTCTGCGTGTCAGTACAGCTTATAGGCACGAGGGG
AAACCACATGTATCTGACTTCCGAATTTCACGCTCAGCTGGTGCTTCCAC
TGCAGTTGCGGCTTCTTCGTTCGGATACCTTCGGAGGGTGAACTTTGTCG
TTGACAAAATGGTTCGCATGGCGTGTTCCTGCATATGCCGTGCACCTCAC
TCGCTCTTTGGAGGCGTTGGGCTATGTGCACCCCCTCTCAGTCGGCCTTG
CGGCCTCGTCGTAGTCGTGTCAACGTTTTTCGTTCGTGACGCTTGTGTTC
TCGTTGCCGGCACGTTTCGTCTCGACGCTGCTGTAGGCCGTGACGTTTGT
CGATCCTGCGATTGGACGGTCGATGTCTTCGTGCGACACCGCCAGCGGCT
CCGACGAGAAAACCATGCGCCTGCAGGGCGCGCGGAATGCGCAGCACGGC
GCCGAGCGGCACGAGCTGCCCTTTGGGATGGCGGTGGAAGCGAGCGCGCT
GTGCGAAATGGAAGAAGCTCTCCGGGTACAGTAGTAGTACGCTTTTTACA
TCTCAACATCCGTAGAATTCGCATGGTGTGTTCCCGCGCGCGCCCGGGCC
GGCTGTCTTCCCCGCCGTCGGTTGGTGTTGCTTTTTTCCCTCTCGGTGAC
TCGAGCTAGACCGTTCACCGGGCCTAGAGCTGTTGAAATTCGACGGACTT
ACTCACGATAGGTGGCGAGGTGTGCGATGTTCCCGGCTCCTTGGGGGCTC
TCACTATACCACCCTTACTTCTCTAGTGCTGTTCGCCTTCTGGCGGACGC
TCTGCGCGTATACATATACACCCGTCGAAAACAAGACTTTGAGACATGCA
ATAAATACCGCACTCTCTGCCGTGCTGCTGTAACTTGTTGCTCAAGCAGG
CGCTCAACGTGCCTCTGGTCGCGGTCGCCTGCGCCGAGAGCGAAATACCC
TCGGCCCTCGCTTGCTGGTGTGGCGGTGGTAGCAGCAGCACCCCCGCCGC
TGCGCGCCCGCCATCGGCAGGCTCAACTGTTGCCGGTGCGCCGCCGGCAG
CAGCGGGAATGGTCGCGACAGCGGAGATGCTTCCAACAGAAGGGACCGTC
GAGATCACCATCATGGACGAGTGTTACCACCCGAGGCAGCTGTTGCTGTC
CGAGAGGGTAAAGGACGCTCTTCGAGGAACGGGGGCACTGTACGCGGTGG
ACAGCTCGTGTGTGTACCCGGTGAACACGAATGGAGGTGGCGCTGCTGGT
GGACAGGCGGGAGCAGGCGCAAGTACGGGTGGCGCAGCGGCAGTTTTGTC
TCCGGAAGAGTTTCGCCGAGCTCAGGTATACACGCCATTTGCTTCGCACG
AGGGCGAAAGAGAGGAGGAAAATGGGTGCAGCCGAAGTGGTCGTGTAGTT
CGGTACTGAAAAGGTCACAGAGGCTTTTCTGTAGACGATGACGTCGCACA
GAGGCTTTTTTCTAACATGGGCTAGCGCCTTAGTGTGTCGGTGACGGACA
GATACAATGACGTATCCTTCCAGCAAATTCGGTTTGAACCGTGAAAGCGC
GACAATGAAAAATTACTGGAGTGTCGGCATCACATCGTTCTTTTTGCCGA
AAGTACACTAGCTCTTCGCGAGATAAGATGCCGTGCTGCAGCTCTTGAGT
CCGCGGTCGGGGCAAGGCAGAAACACTCGACTCCATGGGCACGTGCCAAT
GATTTTCCCAACACGCCTCTAACGTAACAAACCCGTAAGTTCAACGCGAA
CGTGGCTTTCAGACGAAAACACTGGGGAGTCTCATGAAGTTGACTGCCAC
CGTAAGCGGACTCGGCGCATGCCGCGATCAGGGCTCCCAGTATTTGGTCA
GAGCAAGCGTTCGCTGAAGGACCTCGACTTAGCCTTGTTTTCTCCCCTCC
GCCGTGGCTGCTTGCTTCGACAGGATGGCTGTTTGCCTGCGGTGCTCGCC
GACCTGACCCCGAAACCGCGCTTGTCCCTAGATTCGAGGCTACAGAACCA
GATGTTCACTACGGGCGGCGGAAAAAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5225:190..3370-

>mRNA_L-elsbetiae_contig5225.13330.1 ID=mRNA_L-elsbetiae_contig5225.13330.1|Name=mRNA_L-elsbetiae_contig5225.13330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2370bp|location=Sequence derived from alignment at L-elsbetiae_contig5225:190..3370- (Laminarionema elsbetiae ELsaHSoW15)
GCATCAGCGAGTTCCCGGGCACAAGTAACGTCAGGCGGCGGTGGCGGCGG
CGTGTCCATAGGAGCGGCATCCTTGGTGAGCTCGTTCTTGAAACGGGGAT
CGGCGGCATCAATGCCGTCACCAACAGGCATGCCGCACGTTCACGCCGCC
TCGCCACCCAAGACCCCGACTTCCTTGGCCTCTCTTGTCGCTGGCGTCCC
GCCTGGGAGCGCCGGAGCAGGGTTCCGTACTCCGACCGCCGGAACGGATA
ACGGCTTTCCACGCCGAGGGGGCGATCGATTCTTCCACAGCGCGTGGCCG
CCGAGCCTGAAAAAGAGGCGGCGAATTCTGTACTATCCTAAGCCCAACAA
CCCGGCATCAGCGAGTTCCCGGGCACAAGTAACGTCAGGCGGCGGTGGCG
GCGGCGTGTCCATAGGAGCGGCATCCTTGGTGAGCTCGTTCTTGAAACGG
GGATCGGCGGCATCAATGCCGTCACCAACAGGCATGCCGCACGTTCACGC
CGCCTCGCCACCCAAGACCCCGACTTCCTTGGCCTCTCTTGTCGCTGGCG
TCCCGCCTGGGAGCGCCGGAGCAGGGTTCCGTACTCCGACCGCCGGAACG
GATAACGGCTTTCCACGCCGAGGGGGCGATCGATTCTTCCACAGCGCGTG
GCCGCCGAGCCTGAAAAAGAGGCGGCGAATTCTGTACTATCCTAAGCCCA
ACAACCCGGTTGGCAGGCGGATATTGTACTGGGTGCGGGCGAACTATCGC
GTGAAAGACAATCTCGGTCTTTCGGTTGCTTTCTGGCTAAGCGCGCAAAC
GCAGCTGCCCTTGCAGGTTGGCAGGCGGATATTGTACTGGGTGCGGGCGA
ACTATCGCGTGAAAGACAATCTCGGTCTTTCGGTTGCTTTCTGGCTAAGC
GCGCAAACGCAGCTGCCCTTGCAGGCCGTGACGTTTGTCGATCCTGCGAT
TGGACGGTCGATGTCTTCGTGCGACACCGCCAGCGGCTCCGACGAGAAAA
CCATGCGCCTGCAGGGCGCGCGGAATGCGCAGCACGGCGCCGAGCGGCAC
GAGCTGCCCTTTGGGATGGCGGTGGAAGCGAGCGCGCTGTGCGAAATGGA
AGAAGCTCTCCGGGCCGTGACGTTTGTCGATCCTGCGATTGGACGGTCGA
TGTCTTCGTGCGACACCGCCAGCGGCTCCGACGAGAAAACCATGCGCCTG
CAGGGCGCGCGGAATGCGCAGCACGGCGCCGAGCGGCACGAGCTGCCCTT
TGGGATGGCGGTGGAAGCGAGCGCGCTGTGCGAAATGGAAGAAGCTCTCC
GGGCGCTCAACGTGCCTCTGGTCGCGGTCGCCTGCGCCGAGAGCGAAATA
CCCTCGGCCCTCGCTTGCTGGTGTGGCGGTGGTAGCAGCAGCACCCCCGC
CGCTGCGCGCCCGCCATCGGCAGGCTCAACTGTTGCCGGTGCGCCGCCGG
CAGCAGCGGGAATGGTCGCGACAGCGGAGATGCTTCCAACAGAAGGGACC
GTCGAGATCACCATCATGGACGAGTGTTACCACCCGAGGCAGCTGTTGCT
GTCCGAGAGGGTAAAGGACGCTCTTCGAGGAACGGGGGCACTGTACGCGG
TGGACAGCTCGTGTGTGTACCCGGTGAACACGAATGGAGGTGGCGCTGCT
GGTGGACAGGCGGGAGCAGGCGCAAGTACGGGTGGCGCAGCGGCAGTTTT
GTCTCCGGAAGAGTTTCGCCGAGCTCAGGCGCTCAACGTGCCTCTGGTCG
CGGTCGCCTGCGCCGAGAGCGAAATACCCTCGGCCCTCGCTTGCTGGTGT
GGCGGTGGTAGCAGCAGCACCCCCGCCGCTGCGCGCCCGCCATCGGCAGG
CTCAACTGTTGCCGGTGCGCCGCCGGCAGCAGCGGGAATGGTCGCGACAG
CGGAGATGCTTCCAACAGAAGGGACCGTCGAGATCACCATCATGGACGAG
TGTTACCACCCGAGGCAGCTGTTGCTGTCCGAGAGGGTAAAGGACGCTCT
TCGAGGAACGGGGGCACTGTACGCGGTGGACAGCTCGTGTGTGTACCCGG
TGAACACGAATGGAGGTGGCGCTGCTGGTGGACAGGCGGGAGCAGGCGCA
AGTACGGGTGGCGCAGCGGCAGTTTTGTCTCCGGAAGAGTTTCGCCGAGC
TCAGGATGGCTGTTTGCCTGCGGTGCTCGCCGACCTGACCCCGAAACCGC
GCTTGTCCCTAGATTCGAGGCTACAGAACCAGATGTTCACTACGGGCGGC
GGAAAAAGGTAAGATGGCTGTTTGCCTGCGGTGCTCGCCGACCTGACCCC
GAAACCGCGCTTGTCCCTAGATTCGAGGCTACAGAACCAGATGTTCACTA
CGGGCGGCGGAAAAAGGTAA
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