mRNA_L-elsbetiae_contig5215.13321.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5215.13321.1
Unique NamemRNA_L-elsbetiae_contig5215.13321.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5215.13321.1 vs. uniprot
Match: D7G2F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F9_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.140e-74
Identity = 136/199 (68.34%), Postives = 158/199 (79.40%), Query Frame = 1 
Query:    1 QVKAARYALSKDPKGQAKGGTVGARYAAAQLGVPESQSVREWMKRLPEMEEALERAQAVGGDSASLHTRKKKSMSRGRVPSTHKIENQLLAFIEQESSS--YSNGLSRVA-------GLKKVSSRAVKDKAQELMPDVFGVAPSPDDNYGGGGDDYQAALKRHEAKISSWCHRFLKRHRMASLCENP--LKKHKREAEG 564
            +VKAARYALS DPKGQA+GGTVGARYAAAQL +PESQSVREWM+RLPEME  L RAQ  GG+  S H R+KKSMS GRVP+THKIE +LLAFI++ESSS  +SNG+++         G KKVSSRAVKDKAQELMPDVFGV PS + +    GDDY  A KR+EAK+SSWCHRFLKRHR+A+LCENP  +KK +   EG
Sbjct:  269 KVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELMRAQTDGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGVAQAXXXXXXXXGSKKVSSRAVKDKAQELMPDVFGVVPSWERD----GDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIGEEG 463
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BLAST of mRNA_L-elsbetiae_contig5215.13321.1 vs. uniprot
Match: A0A6H5JI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI20_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 7.690e-72
Identity = 133/190 (70.00%), Postives = 152/190 (80.00%), Query Frame = 1 
Query:    1 QVKAARYALSKDPKGQAKGGTVGARYAAAQLGVPESQSVREWMKRLPEMEEALERAQAVGGDSASLHTRKKKSMSRGRVPSTHKIENQLLAFIEQESSSYSNGLSRVAGLKKVSSRAVKDKAQELMPDVFGVAPSPDDNYGGGGDDYQAALKRHEAKISSWCHRFLKRHRMASLCENP--LKKHKREAEG 564
            +VKAARYALS DPKGQA+GGTVGARYAAAQL +PESQSVREWM+RLPEME  L RAQ  GG+  S H R+KKSMS GRVP+TH IE +LLAFI++ESSS S      +  KKVSSRAVKDKAQELMPDVFGV PS + +    GDDY  A KR+EAK+SSWCHRFLKRHR+A+LCENP  +KK + E EG
Sbjct:  631 KVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTDGGEKVSRHVRRKKSMSNGRVPATHMIEEELLAFIQRESSSCSFSNGAASRSKKVSSRAVKDKAQELMPDVFGVVPSWERD----GDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEG 816
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5215.13321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2F9_ECTSI1.140e-7468.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI20_9PHAE7.690e-7270.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5215contigL-elsbetiae_contig5215:11139..12675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001430.1
Exons2
Model size678
Cds size678
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816535.701092-CDS-L-elsbetiae_contig5215:11138..115821622816535.701092-CDS-L-elsbetiae_contig5215:11138..11582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5215 11139..11582 -
1691683630.094223-CDS-L-elsbetiae_contig5215:11138..115821691683630.094223-CDS-L-elsbetiae_contig5215:11138..11582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5215 11139..11582 -
1622816535.7134745-CDS-L-elsbetiae_contig5215:12441..126751622816535.7134745-CDS-L-elsbetiae_contig5215:12441..12675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5215 12442..12675 -
1691683630.109947-CDS-L-elsbetiae_contig5215:12441..126751691683630.109947-CDS-L-elsbetiae_contig5215:12441..12675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5215 12442..12675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5215.13321.1prot_L-elsbetiae_contig5215.13321.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5215 11139..12675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5215.13321.1

>prot_L-elsbetiae_contig5215.13321.1 ID=prot_L-elsbetiae_contig5215.13321.1|Name=mRNA_L-elsbetiae_contig5215.13321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=226bp
QVKAARYALSKDPKGQAKGGTVGARYAAAQLGVPESQSVREWMKRLPEME
EALERAQAVGGDSASLHTRKKKSMSRGRVPSTHKIENQLLAFIEQESSSY
SNGLSRVAGLKKVSSRAVKDKAQELMPDVFGVAPSPDDNYGGGGDDYQAA
LKRHEAKISSWCHRFLKRHRMASLCENPLKKHKREAEGGGGEGGGGGAGG
GGGGGWTGYGGGSSSGGGGGEYEDED
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mRNA from alignment at L-elsbetiae_contig5215:11139..12675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5215.13321.1 ID=mRNA_L-elsbetiae_contig5215.13321.1|Name=mRNA_L-elsbetiae_contig5215.13321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1537bp|location=Sequence derived from alignment at L-elsbetiae_contig5215:11139..12675- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGAAGGCGGCGAGGTACGCCCTCTCCAAGGACCCCAAGGGCCAGGC
CAAGGGGGGCACCGTGGGGGCCCGGTACGCCGCGGCGCAGCTGGGGGTGC
CCGAGTCGCAGAGCGTGAGGGAGTGGATGAAGCGGCTGCCGGAGATGGAG
GAGGCGCTGGAGCGGGCGCAGGCGGTCGGCGGGGACTCGGCCTCCCTCCA
CACCCGCAAGAAGAAGTCCATGTCGAGGGGGCGGGTGAGATGAGGGGAGA
CGCAAAAAGCGGCCGGCCGGAAATGCTCTAAATTACGTGTGTAGCAGAGA
CCCGTCGCCCCGGTGGTCTGTCTACTTGGTACATAGGCCTCGTAACCGTC
TGGGTTGTATTTTGTGTTTTGCAGCACTTTGTGAGTTGGAACCTCTCTGG
GAACAAAGCAGACTTCGTAATTTCGCTGTGGAAGCGATAGATAAGCTCGC
AAGTATGGAGAAGAAGGCACTGCTGAAATCTTCTCGCGTTGCGTTGAAGA
TTGGAAGCAAGCACCACAGGATCAAGTGTGCCATGAACGGAAAATTCCCC
ACTTTGTCACCTTTCTCGTGTGTGGCTCTGGCTGATTTTATGCGTCGAGC
ACAGAAGGAAAGGCAATATAGAGGCTCAGGATATAGATAGAGCAAAAACA
CAAAAAAAATAACTTCAAAAACAAATTCACGTACTACATATACTTCGAAG
TGTGAACTACCGTAGCCGAACTGAATCACGTCATCTTTTGGTGTTTGTAT
GCGAAACATGCCAGCAGCCATTATGTTTTGTTTTTCACAAATCCTCAGTA
GTATTTCTCTCTTTGAGTTAATGTTGCTGCTTATTGAATGATTTTTTTTT
TGCATGGTCGTTTTTGTCACTCACTGCCACCACCTTCCTTCCACCCATAA
ATAACAACGCACCCCGCTCTACATTTTTAATTTATTTTTCTTCTTCACAT
TTATTTCCAGTGCTCGATGGGCTCCTCCTTGCCACGAGGGCATCTCGCCA
GGGTACTGGACCGTGGTCACAGAAGGGTTACTACATGAATACGCTAAATA
CGCACATGTTTACGCACCCATCTAATCAACTTGTCCGTCCCAGGTGCCGT
CGACGCACAAGATCGAGAACCAGCTGCTCGCCTTCATCGAGCAGGAGTCC
TCCTCCTACTCCAACGGGCTGTCGAGGGTCGCGGGGCTGAAGAAGGTGTC
CTCCCGCGCCGTCAAGGACAAGGCGCAGGAGCTCATGCCCGACGTGTTCG
GGGTGGCCCCGTCCCCCGACGACAACTACGGCGGCGGCGGGGACGACTAC
CAGGCGGCCCTTAAGAGGCACGAGGCGAAGATCAGCTCGTGGTGCCACCG
GTTCCTGAAGCGCCACAGGATGGCGAGCTTGTGCGAGAACCCGCTCAAGA
AGCACAAGAGAGAGGCAGAAGGAGGAGGAGGAGAAGGAGGAGGCGGTGGT
GCTGGCGGCGGGGGCGGCGGTGGTTGGACGGGCTACGGCGGCGGCAGCAG
CAGTGGCGGGGGTGGCGGCGAGTACGAAGATGAGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5215:11139..12675-

>mRNA_L-elsbetiae_contig5215.13321.1 ID=mRNA_L-elsbetiae_contig5215.13321.1|Name=mRNA_L-elsbetiae_contig5215.13321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1356bp|location=Sequence derived from alignment at L-elsbetiae_contig5215:11139..12675- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGAAGGCGGCGAGGTACGCCCTCTCCAAGGACCCCAAGGGCCAGGC
CAAGGGGGGCACCGTGGGGGCCCGGTACGCCGCGGCGCAGCTGGGGGTGC
CCGAGTCGCAGAGCGTGAGGGAGTGGATGAAGCGGCTGCCGGAGATGGAG
GAGGCGCTGGAGCGGGCGCAGGCGGTCGGCGGGGACTCGGCCTCCCTCCA
CACCCGCAAGAAGAAGTCCATGTCGAGGGGGCGGCAGGTGAAGGCGGCGA
GGTACGCCCTCTCCAAGGACCCCAAGGGCCAGGCCAAGGGGGGCACCGTG
GGGGCCCGGTACGCCGCGGCGCAGCTGGGGGTGCCCGAGTCGCAGAGCGT
GAGGGAGTGGATGAAGCGGCTGCCGGAGATGGAGGAGGCGCTGGAGCGGG
CGCAGGCGGTCGGCGGGGACTCGGCCTCCCTCCACACCCGCAAGAAGAAG
TCCATGTCGAGGGGGCGGGTGCCGTCGACGCACAAGATCGAGAACCAGCT
GCTCGCCTTCATCGAGCAGGAGTCCTCCTCCTACTCCAACGGGCTGTCGA
GGGTCGCGGGGCTGAAGAAGGTGTCCTCCCGCGCCGTCAAGGACAAGGCG
CAGGAGCTCATGCCCGACGTGTTCGGGGTGGCCCCGTCCCCCGACGACAA
CTACGGCGGCGGCGGGGACGACTACCAGGCGGCCCTTAAGAGGCACGAGG
CGAAGATCAGCTCGTGGTGCCACCGGTTCCTGAAGCGCCACAGGATGGCG
AGCTTGTGCGAGAACCCGCTCAAGAAGCACAAGAGAGAGGCAGAAGGAGG
AGGAGGAGAAGGAGGAGGCGGTGGTGCTGGCGGCGGGGGCGGCGGTGGTT
GGACGGGCTACGGCGGCGGCAGCAGCAGTGGCGGGGGTGGCGGCGAGTAC
GAAGATGAGGATGTGCCGTCGACGCACAAGATCGAGAACCAGCTGCTCGC
CTTCATCGAGCAGGAGTCCTCCTCCTACTCCAACGGGCTGTCGAGGGTCG
CGGGGCTGAAGAAGGTGTCCTCCCGCGCCGTCAAGGACAAGGCGCAGGAG
CTCATGCCCGACGTGTTCGGGGTGGCCCCGTCCCCCGACGACAACTACGG
CGGCGGCGGGGACGACTACCAGGCGGCCCTTAAGAGGCACGAGGCGAAGA
TCAGCTCGTGGTGCCACCGGTTCCTGAAGCGCCACAGGATGGCGAGCTTG
TGCGAGAACCCGCTCAAGAAGCACAAGAGAGAGGCAGAAGGAGGAGGAGG
AGAAGGAGGAGGCGGTGGTGCTGGCGGCGGGGGCGGCGGTGGTTGGACGG
GCTACGGCGGCGGCAGCAGCAGTGGCGGGGGTGGCGGCGAGTACGAAGAT
GAGGAT
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