mRNA_L-elsbetiae_contig52.13286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig52.13286.1
Unique NamemRNA_L-elsbetiae_contig52.13286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig52.13286.1 vs. uniprot
Match: D7FNC2_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.630e-10
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  280 HETDDISDILGVGLGGLPTLSSSGQLSVLSASAVEFTPGG 399
            HETDDISDIL VGLGGLPTLS+SGQLS+LSASA EF PGG
Sbjct:   31 HETDDISDILNVGLGGLPTLSASGQLSILSASAQEFKPGG 70
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BLAST of mRNA_L-elsbetiae_contig52.13286.1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.080e-10
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  280 HETDDISDILGVGLGGLPTLSSSGQLSVLSASAVEFTPGGQ 402
            HETDDISDIL VGLGGLPTLS+ GQLS+LSASA EF PGGQ
Sbjct:   31 HETDDISDILNVGLGGLPTLSALGQLSILSASAQEFKPGGQ 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig52.13286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNC2_ECTSI1.630e-1087.50C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKG2_9PHAE3.080e-1085.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig52contigL-elsbetiae_contig52:16742..21526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue9.3e-10
Seed eggNOG ortholog2880.D7FNC2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size549
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig52.13286.1prot_L-elsbetiae_contig52.13286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig52 16743..21526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816532.2665932-CDS-L-elsbetiae_contig52:16742..168231622816532.2665932-CDS-L-elsbetiae_contig52:16742..16823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 16743..16823 -
1691683627.7542462-CDS-L-elsbetiae_contig52:16742..168231691683627.7542462-CDS-L-elsbetiae_contig52:16742..16823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 16743..16823 -
1622816532.280027-CDS-L-elsbetiae_contig52:18161..183041622816532.280027-CDS-L-elsbetiae_contig52:18161..18304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 18162..18304 -
1691683627.765248-CDS-L-elsbetiae_contig52:18161..183041691683627.765248-CDS-L-elsbetiae_contig52:18161..18304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 18162..18304 -
1622816532.2939332-CDS-L-elsbetiae_contig52:19991..202461622816532.2939332-CDS-L-elsbetiae_contig52:19991..20246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 19992..20246 -
1691683627.775035-CDS-L-elsbetiae_contig52:19991..202461691683627.775035-CDS-L-elsbetiae_contig52:19991..20246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 19992..20246 -
1622816532.307866-CDS-L-elsbetiae_contig52:21459..215261622816532.307866-CDS-L-elsbetiae_contig52:21459..21526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 21460..21526 -
1691683627.784511-CDS-L-elsbetiae_contig52:21459..215261691683627.784511-CDS-L-elsbetiae_contig52:21459..21526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 21460..21526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig52.13286.1

>prot_L-elsbetiae_contig52.13286.1 ID=prot_L-elsbetiae_contig52.13286.1|Name=mRNA_L-elsbetiae_contig52.13286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
VLFPLSRQRVTLPIEGSGVSLPAGTLSRHSQPRLMSSWSPWDTGAGSESV
AALDSSRGTSHGPAGASADGGVGPGAAGEASACGSSDGSACARHETDDIS
DILGVGLGGLPTLSSSGQLSVLSASAVEFTPGGQQGQQGQDRLLLEAEGG
GGQTAAGVGVEGQGEGGGGEDGMFYAEMQLEA
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mRNA from alignment at L-elsbetiae_contig52:16742..21526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig52.13286.1 ID=mRNA_L-elsbetiae_contig52.13286.1|Name=mRNA_L-elsbetiae_contig52.13286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4785bp|location=Sequence derived from alignment at L-elsbetiae_contig52:16742..21526- (Laminarionema elsbetiae ELsaHSoW15)
GTGCTCTTCCCTCTCTCACGCCAACGTGTAACTCTTCCCATCGAGGGCAG
TGGGGTCTCTTTGCCAGGTTCGTTTTTGGTCTACGGATATGTAGTTCCAC
TGCCCCTTCGGTAATATTTTTGCAGCTTTATGAAAACCATCCGCATTTTT
TTGCAGCTGTGCCGCCTCCCGCGCATTCCCCGCAGGCGTCTCTTCCTCCT
GTCCTCCATACTGCACGAGCATGCATGACCACATATTATATCACGCCACC
ACGCCTCGTCTTTTTTTTTCACGCTTTACCGTTTCAATCAAATGTGCTCT
GTACCATCATTTTGCCGTGTGCGCACACAGACATAAGACTACACAAGGAC
GGAGAGATGCTTCAGCTTCCAACACATGAGCAGTATCTAATGTTGTGCAG
CAGTGCAGTAACAGTTACAGCAGTAGTATCGATATGCCCAGTGCAGTAAG
AAAGATGTTCGTGGCTTTATGCCTTAGATCGTGCCTATATTTCAAAGCGC
AGCAAGGTGCCGAGGCTCACAACAGTGGTGGCGAGTGCCACAAAATGTGC
CAAGCAACAACAACTGCTCGGCTCTAATAAACATGGGTGTAAGCTCATTG
CACAGGAGAGGGTGGGGCAAAAAAACAAAACAAAAAAGAAGAAAAAGCCC
CGGTGTTCACCCCCTCCTGTGTGCCCCCGATTGGTTCTAGTTGTACAGAC
AAATGCACCGCAAAGTGTAGTACCTCTAAGTACACCGCAAGGTGTAGTAC
ACGTCTCCACTTGGGGGGACTGTCGCCAAAATAAATGGGAAGGATACACA
CACACACACCACACACACACACAAGCTCATTGCACAAGTAGGAAGTCAGG
CTGGGCCTGAACTGTGCTATTCTCTCATATGTGTATGTACCACTGATACA
ACATCGAAATAAACGAGCAGTTATTGTACCAACTGGACGACACACACGCC
TTTGGTGGCTCCTTGCGCGTCCTCGTGCTTACAGGTATCTAGACTAGACC
TTCTGCGCAGGGACCTTTGAACCTCGACCAAAATGCCCCGCAGCCCAGTC
TTCAGCCCATTGGTGCTACTCGCACATGCAAACATACGAACCACACTTTT
GTAGACACCGCTGCCGCCGATGCATCGTCTCGCCACCCTCTACCACACGT
ATCAAACAATGCACTCAACGCGGTTTTTTTAAAGGGTTCCACGTTCCATT
GTGCGCTACATGACACAACAGCGGTCTTCATCGGCTACTAAATAAAATAC
ACAGTTTTCCGAAATCTTGCCGCGCAGCAGCAGGCACACTCAGTCGACAT
TCTCAACCACGTCTGATGAGTTCTTGGAGCCCCTGGGATACAGGGGCCGG
CAGTGAGAGTGTAGCTGCTCTCGACAGCAGCCGTGGCACCAGTCATGGGC
CTGCGGGTGCCAGTGCAGATGGTGGTGTTGGTCCTGGTGCTGCCGGTGAG
GCGAGCGCTTGCGGGAGCTCTGACGGAAGTGCCTGTGCGCGTCACGAGAC
GGACGACATTTCGGACATCCTTGGCGTCGGCCTAGGTGAGAGAAAGTGAT
GGATGCTGTCTATGCCCTTTTTCCTGTGGACTGCCATGAATCCTGCGCCA
TTTTGGTAGGGAAATAATGAAATGGCCTGTCGGCGACCTTCTTCCATGTG
TTAATTAAACCCGCTGTACACAGCGGTGTCGGAAACTTGCGGAACGAGAG
GGCATACATACAAGGAATGGGAATTTTTATTCTACGCCCATAGCGTCGTA
GAACGCGCGTCCATGAACTTTATTGGCGGCTGTCGATGGCGCTCTTTTTA
CGCCGTGCGTGTGTTGAGATAAGACTCAACAGGAAGGACTGAAGACCCTC
TAGACACGGGGACACCAAGATTACGACAGCAGGATTACGAGGGGATCGCC
TCCGCGAAGAGTTCCTGTCTAACCACTCTATAGGAAATAACAATAATAGA
CAGGGCTTCCGTAACCCCTAACCCCAAACCGACTCCCCCCCGTTAGCCGT
TTCCATAAGCTTCCTGCTGTAGAGCCAGCCCCAAATTGTCAAAAAGAGCT
GTGGGGGGGGGGTATTTACCTAGGAAATAGAGTGCAAAATCTCCCACACA
GTACGTAGTCACTTTTTCATTGGGGGACCCTGCTGCATGAAGCCTATACT
TTATCCCATACGATTTATTAGCCTATACTTTATCCCATACGATTTATTAG
CCTATACTCTATCCCATACGATTTATTCCAGTAAAACCTGCGAAGGCTAG
TGATACGAAGAGGACGCCTGCTCGGCTTGCTTGACAACGAGAAGCGTGCC
CGGCGTCTTTTGGATAGCCTTGAATCTCACGAGAAATAAGATACTTTTAT
TCGGCGCTGGAACACGTCGTACACACGTCTCTTGGCATGACGTCACTGGT
TTTGTGGAGAGACGCGGCAGAAAAGCCTGCGTTATATAAAACCTACCCCG
GCACTGCACGTAAATGGTGTACCCGCTCATGGAAGAACCCTTCAATATGG
AACGAAGTGGATCGGTGTCGTTGTTGTACTGTACCTATGTACCACAGATG
GCGGGATAGACTTGGTAACTGCTGATTGCTTGGTAGCTTTGGTTGGTTTT
GTTCTTCCTCGCCGCGTTTTATTGGCGGGTTGTCATCCTGACAGCCCTTC
AGACAGCAACTGCGTTCCCTTCCCGTATCCACTACGGCCCTTGTGTTTTT
ATGTGCAGGCAGAGCACTTCAGACAGTTATCTTGCTGTAGCCGGCAACCG
TGCGCTGGTTTGTAGTGAACGTAGTTCTGTAGTCGAATGAAGATTTATGG
ACGCGCGGTTGAGTAGGACACATGTCAATTGGTGTGCCTTGCCGGGAAAA
GGTGTACCTCGTCGGCCTTTTTGTGTACCCTTGTCCGGTGTACGTGTGTT
CTTTCGGGTTTTCTGATGGCTCCAGCGCTTTAGTGGCCACGGGCCGATAT
TCTTTGGATAGAGCTAATGTGAGAAACAACAATAACAAGGTGATACCAGT
GAAAACAGCACGGAATCGGCCTGACATGACGTGGCAATACAGCACAAGCT
ATGTACAGCCGGCCCGCTATTCTTCTAAATGCTGAAATAAACAACGCGGC
GACTGCTGTAGCATACCCATGCACCCCCCCCACTGCTGTCCCAGCGGGGC
GCAACAAAAAAAAACTATCTTCCCTTCCCCCGCCGGCATTGGAATAATTA
AATGGTTTCCCCCGCCTTTCAGGTGGACTGCCAACGCTGTCGTCATCCGG
CCAGCTCTCAGTATTATCCGCATCCGCCGTGGAGTTCACCCCGGGAGGCC
AGCAGGGGCAGCAGGGGCAGGACCGGCTGTTGCTAGAGGCAGAAGGGGGT
GGAGGGCAGACGGCGGTGAGATCAAGACTTCGTTGGTTTGGATTTTGGTT
TGGTTTGGTTTGGTTCAGGTTTTCGTTAGTGTCAGTGGCGACCAGGGTGA
CGGTCTGTCGCGATGTCCTGGCTTTAGAAGCGTCGACATCGAATCTTTGT
CCCTGGGGTTGTCGACGGTGGCCGACCCTCGACCTCATCCTTGCGGTGCC
AGGGTGCGCTGCTGATGGCTGTTGCGTGTGCCAAACAGCGTCTCGTGTTA
TCCGCCGGGGTGAATGGTGGTGATGGTCTCAACTTAAAGTGCCCGTATGT
TTATGTTATGGCCCAGGACGGTGCGGTAGTCAAGTGAAGCCAAGAAGCGA
ACACAGGCAAGCGTGCACACGCACACGCCACACCCTATGGAAACGATTGC
GCGGTTTGTCTGCTTGCCTCACCAAGCCTGTATGAGGTATGCCGACGACA
CCGCCAACGCGATCATCCTCGACAATCTCCCAGCCATCGATATTGTTCCA
GGCTCGCGCTTTTCGATACTGATGCTCTAGCTGCCGTGGAGAAAAATATC
GACCGGGAGCAGGCGGCCAAAAAGCGGTGTTACGCTCCTAGCACTGACAG
TCCCGTCTTGATGCTGCATTGAAGTCGAAAGTAGTTGTATCGCACGGTTG
CGCACGAGGACCAGCTCTTTCCTGTCGTTCTTTGTTTAGTCGCCTTTTGT
CGCCTTTTGCTCGGCAGGGAGAAAAACTCCCAAGTATAACTGGAGTAACA
TGTTTAGCGCCGACGTTCGAATACGTTCGCCGACCTTCCTTCCGCGCCTG
CCTTGAAACGAAGACAAGACGATGTCGGCGCGAATGTGCTCAAGATGACT
GCCTGTCGCTCACAGTCTACATAATACACATACGAAGTAGAATGTTCTAG
GATGCAGGCATGACACCTGTGCATGGTGTCCTCTTCGAAGCCCGGAACTT
GTCTAGTCTTGTAGTGTAGTCTATCTGCAGTTGGGTTCAGTTCAGCTTCG
CTCCCTCCACGGTTTTCCAGGAAAAATTGTATCGGGTGCGCTTTCTACCT
TCGCTGTCCTTGTTGTCGTTGCTGTTGCTGTTGCTGTTGTTGTTATTGCT
GATATGATGCTGGTGATGTTGTTGTTGTTATTGCTGATTACGATCGTGCT
GCTGATGATAATGATGTTTGTTGCTGTTATTATTGCTGATTGTGATGGTC
ATGATAACGATGCTGTTGTTGTTTTGAGGATGATGATGATGATGATGTCA
TATTGATTATCGTGATGATGATGATGTCATTATTGATGATCCTGATGATG
ATGATGCTTTTTTTTTATTGTTGCTGGTGTTGATGTTGATGTTGCGGCGT
CAGGCTGGTGTCGGTGTCGAAGGGCAAGGGGAAGGGGGAGGAGGAGAAGA
CGGCATGTTCTACGCAGAGATGCAACTCGAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig52:16742..21526-

>mRNA_L-elsbetiae_contig52.13286.1 ID=mRNA_L-elsbetiae_contig52.13286.1|Name=mRNA_L-elsbetiae_contig52.13286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig52:16742..21526- (Laminarionema elsbetiae ELsaHSoW15)
GTGCTCTTCCCTCTCTCACGCCAACGTGTAACTCTTCCCATCGAGGGCAG
TGGGGTCTCTTTGCCAGGTGCTCTTCCCTCTCTCACGCCAACGTGTAACT
CTTCCCATCGAGGGCAGTGGGGTCTCTTTGCCAGCAGGCACACTCAGTCG
ACATTCTCAACCACGTCTGATGAGTTCTTGGAGCCCCTGGGATACAGGGG
CCGGCAGTGAGAGTGTAGCTGCTCTCGACAGCAGCCGTGGCACCAGTCAT
GGGCCTGCGGGTGCCAGTGCAGATGGTGGTGTTGGTCCTGGTGCTGCCGG
TGAGGCGAGCGCTTGCGGGAGCTCTGACGGAAGTGCCTGTGCGCGTCACG
AGACGGACGACATTTCGGACATCCTTGGCGTCGGCCTAGCAGGCACACTC
AGTCGACATTCTCAACCACGTCTGATGAGTTCTTGGAGCCCCTGGGATAC
AGGGGCCGGCAGTGAGAGTGTAGCTGCTCTCGACAGCAGCCGTGGCACCA
GTCATGGGCCTGCGGGTGCCAGTGCAGATGGTGGTGTTGGTCCTGGTGCT
GCCGGTGAGGCGAGCGCTTGCGGGAGCTCTGACGGAAGTGCCTGTGCGCG
TCACGAGACGGACGACATTTCGGACATCCTTGGCGTCGGCCTAGGTGGAC
TGCCAACGCTGTCGTCATCCGGCCAGCTCTCAGTATTATCCGCATCCGCC
GTGGAGTTCACCCCGGGAGGCCAGCAGGGGCAGCAGGGGCAGGACCGGCT
GTTGCTAGAGGCAGAAGGGGGTGGAGGGCAGACGGCGGTGGACTGCCAAC
GCTGTCGTCATCCGGCCAGCTCTCAGTATTATCCGCATCCGCCGTGGAGT
TCACCCCGGGAGGCCAGCAGGGGCAGCAGGGGCAGGACCGGCTGTTGCTA
GAGGCAGAAGGGGGTGGAGGGCAGACGGCGGCTGGTGTCGGTGTCGAAGG
GCAAGGGGAAGGGGGAGGAGGAGAAGACGGCATGTTCTACGCAGAGATGC
AACTCGAGGCGGCTGGTGTCGGTGTCGAAGGGCAAGGGGAAGGGGGAGGA
GGAGAAGACGGCATGTTCTACGCAGAGATGCAACTCGAGGCG
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