mRNA_L-elsbetiae_contig5189.13273.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5189.13273.1
Unique NamemRNA_L-elsbetiae_contig5189.13273.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5189.13273.1 vs. uniprot
Match: D8LTT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT2_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 4.740e-28
Identity = 80/152 (52.63%), Postives = 89/152 (58.55%), Query Frame = 1 
Query:    1 LVGGSW-GAGGXXXXXXXXSFNYGDLTMEGRGSGGGGIGGPVRSASWAEKFVTKREEQSVLVRQLERELTSTVSALRDERREKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTTTLMXXXEALRTRCDRLSASREERAEEADKTVARLRE 453
             +G SW G GG         +  G L   G+G      G   RSASWAEK VTKREEQSVLV+QLEREL STVSAL+DERRE+R                             MTTTLM   EAL++RCDRL ASREERAEEADKT+ARLRE
Sbjct:  482 FLGSSWAGVGGSSG-----GYQLGGLAAAGKG------GDAFRSASWAEKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRATVGDREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLRE 622
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BLAST of mRNA_L-elsbetiae_contig5189.13273.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.440e-28
Identity = 81/152 (53.29%), Postives = 91/152 (59.87%), Query Frame = 1 
Query:    1 LVGGSW-GAGGXXXXXXXXSFNYGDLTMEGRGSGGGGIGGPVRSASWAEKFVTKREEQSVLVRQLERELTSTVSALRDERREKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTTTLMXXXEALRTRCDRLSASREERAEEADKTVARLRE 453
            L+G SW G GG          + G   + GR + G G GG   SASWA K VTKREEQSVLV+QLEREL STVSAL+DERRE+R                             MTTTLM   EAL++RCDRL ASREERAEEADKT+ARLRE
Sbjct:  473 LLGSSWAGVGG----------SSGSYHLGGRAAAGEG-GGAFSSASWAAKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRAAVGYREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLRE 613
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5189.13273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT2_ECTSI4.740e-2852.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC5_9PHAE6.440e-2853.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5189contigL-elsbetiae_contig5189:10952..12880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002910.1
Exons3
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5189.13273.1prot_L-elsbetiae_contig5189.13273.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5189 10952..12880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816531.0888941-CDS-L-elsbetiae_contig5189:10951..111221622816531.0888941-CDS-L-elsbetiae_contig5189:10951..11122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 10952..11122 +
1691683626.918301-CDS-L-elsbetiae_contig5189:10951..111221691683626.918301-CDS-L-elsbetiae_contig5189:10951..11122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 10952..11122 +
1622816531.0995984-CDS-L-elsbetiae_contig5189:11487..116421622816531.0995984-CDS-L-elsbetiae_contig5189:11487..11642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 11488..11642 +
1691683626.9328399-CDS-L-elsbetiae_contig5189:11487..116421691683626.9328399-CDS-L-elsbetiae_contig5189:11487..11642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 11488..11642 +
1622816531.1120949-CDS-L-elsbetiae_contig5189:12753..128801622816531.1120949-CDS-L-elsbetiae_contig5189:12753..12880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 12754..12880 +
1691683626.942298-CDS-L-elsbetiae_contig5189:12753..128801691683626.942298-CDS-L-elsbetiae_contig5189:12753..12880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 12754..12880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5189.13273.1

>prot_L-elsbetiae_contig5189.13273.1 ID=prot_L-elsbetiae_contig5189.13273.1|Name=mRNA_L-elsbetiae_contig5189.13273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
LVGGSWGAGGGSWGGSGSSFNYGDLTMEGRGSGGGGIGGPVRSASWAEKF
VTKREEQSVLVRQLERELTSTVSALRDERREKRGQAEALKSKLDKARGAA
RDLETELERRERMTTTLMGELEALRTRCDRLSASREERAEEADKTVARLR
E
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mRNA from alignment at L-elsbetiae_contig5189:10952..12880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5189.13273.1 ID=mRNA_L-elsbetiae_contig5189.13273.1|Name=mRNA_L-elsbetiae_contig5189.13273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1929bp|location=Sequence derived from alignment at L-elsbetiae_contig5189:10952..12880+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGTGGGGGGCTCTTGGGGCGCAGGCGGGGGCAGCTGGGGAGGCAGCGG
CAGCAGCTTTAACTACGGCGACTTGACGATGGAAGGAAGAGGAAGCGGGG
GTGGGGGCATTGGGGGTCCTGTCCGGAGCGCTTCCTGGGCCGAGAAGTTC
GTTACCAAGCGAGAGGAGCAGGTGAAGCCCAAGGGCTGTGCGGTAGGAAC
GCAGTCGCGATTTTTGCGTGCGTGCGTGCGTGTGTGTAAGTCCTCGTCGC
TCTAGCCAGCGATAGGTTTCGATTCTAAACGCGGTGTACACTAGTCCGTG
AGAGACACCGTTTTGTCTTTCAAACACTTCGTCGAGTTTTGGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGTCGGTGGTGTGCCGGAGCGTGCCGGTGAGTAGC
TAGGCGCCGGGTTTTGTTACAACTTTTCTTCGTCGTGTTTTGGTTGCTGC
TGCTGCTGCTACCACTGTTACTACTGCTGGTATCAGAGCGTGCTGGTGAG
ACAGCTGGAGCGCGAGCTGACGTCGACGGTTTCGGCCTTGCGAGACGAGC
GAAGAGAAAAGAGGGGCCAGGCGGAGGCTCTCAAGTCCAAGCTCGACAAG
GCCAGGGGCGCCGCCCGGGACCTGGAGACCGAGCTCGAGAGGTGCGACGG
AGGGAGGGAGGGGGGGCAGTGGCTGCAAGGCAGGGCAGCAGCTGCGAGGG
GCAGCATTATTTTTCTTGTTCAAGTTTCCGGGTCTCCGATCCTGGAAAAA
AAAAATTAGCCTCCATCTGAGTAGCCGGCTCGTTTGCGCCCCCTTAAAAA
ATCGCAAAATACTCGTCCGAGCGCTGGTAAACGTGTCGTAAGAAAAAAAA
AAAACGTAGATACCATGTTTATTTTTTCGCTGGGCACTGGCGCTGCCTAC
TACTGTGAGGGGAGCACATGTAGCGTTGGACGAAAGTCAATCTGAAGGAA
AAGAGAAGGGCCGCCGCGGGTGACGAGCTGCGCTGGTAATTGGGGTGGGG
GGTTTGGGTTTTGCGCTTGCTTTCTATCTTATTTTCAGCGATGCTTGCTA
CAAAACCCTTTTCGATTTTGCTCTCAAGAGGTTGGTTGGTTCCTCACGCG
TTCGAGCGCCGAGGACAGCACCAGAGTCGACTGGCTCCCTTCACCACTGC
AAGCGTGCCGATTACCCTCAGACGGTTAACACTTTTCAAAGTCATGTATA
CCTCGTACGTACACACCGGGCAACGAAATCTCGCATGGCGGGAACGTTCT
ACGTGTATAGTGGTCGCCCCGCTATTTACTGTGGGTCTCCCTCCGCTCTC
TGACACTTTTCAAAATCATACGTCATACACACACACACCCCGGTAAACGA
AACCTCGCATGGCGGGAACATTCTACGGGTAAATAAAGTGGTCATCCCAT
TACCATACCCACTACTATAGGGTGAGTCTCCCTCCGGTCTCTGTCTCTCT
CCTTCTTATGTATATTCTTCCTGCTTATCGCGTCTCTGTCTCTCTGCCTT
CCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTGCCTGCTGGCCCAACGAAA
ACAAAATAATTGTTGGCCGACCTCGCAAATCTTAAATCTTTGCAGGGGAG
ACGTCGAACTCTTCTGATATTATAGGTTGTTTTTCTGCTCGCTTCGCCAA
ATATTACGTCTCTGTACGGAATACCGTTTGAACCCCATATCGATTCCTTG
CTCTAGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTTTAAAAC
AGGCGAGAGCGCATGACGACGACCCTCATGGGAGAGCTGGAGGCCCTGCG
GACACGCTGCGACCGGCTGTCGGCGTCGCGGGAGGAGAGGGCCGAGGAAG
CGGACAAGACCGTGGCGCGCCTCCGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5189:10952..12880+

>mRNA_L-elsbetiae_contig5189.13273.1 ID=mRNA_L-elsbetiae_contig5189.13273.1|Name=mRNA_L-elsbetiae_contig5189.13273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig5189:10952..12880+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGTGGGGGGCTCTTGGGGCGCAGGCGGGGGCAGCTGGGGAGGCAGCGG
CAGCAGCTTTAACTACGGCGACTTGACGATGGAAGGAAGAGGAAGCGGGG
GTGGGGGCATTGGGGGTCCTGTCCGGAGCGCTTCCTGGGCCGAGAAGTTC
GTTACCAAGCGAGAGGAGCAGCTCGTGGGGGGCTCTTGGGGCGCAGGCGG
GGGCAGCTGGGGAGGCAGCGGCAGCAGCTTTAACTACGGCGACTTGACGA
TGGAAGGAAGAGGAAGCGGGGGTGGGGGCATTGGGGGTCCTGTCCGGAGC
GCTTCCTGGGCCGAGAAGTTCGTTACCAAGCGAGAGGAGCAGAGCGTGCT
GGTGAGACAGCTGGAGCGCGAGCTGACGTCGACGGTTTCGGCCTTGCGAG
ACGAGCGAAGAGAAAAGAGGGGCCAGGCGGAGGCTCTCAAGTCCAAGCTC
GACAAGGCCAGGGGCGCCGCCCGGGACCTGGAGACCGAGCTCGAGAGAGC
GTGCTGGTGAGACAGCTGGAGCGCGAGCTGACGTCGACGGTTTCGGCCTT
GCGAGACGAGCGAAGAGAAAAGAGGGGCCAGGCGGAGGCTCTCAAGTCCA
AGCTCGACAAGGCCAGGGGCGCCGCCCGGGACCTGGAGACCGAGCTCGAG
AGGCGAGAGCGCATGACGACGACCCTCATGGGAGAGCTGGAGGCCCTGCG
GACACGCTGCGACCGGCTGTCGGCGTCGCGGGAGGAGAGGGCCGAGGAAG
CGGACAAGACCGTGGCGCGCCTCCGGGAGGCGAGAGCGCATGACGACGAC
CCTCATGGGAGAGCTGGAGGCCCTGCGGACACGCTGCGACCGGCTGTCGG
CGTCGCGGGAGGAGAGGGCCGAGGAAGCGGACAAGACCGTGGCGCGCCTC
CGGGAG
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