Homology
BLAST of mRNA_L-elsbetiae_contig5189.13273.1 vs. uniprot
Match:
D8LTT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT2_ECTSI)
HSP 1 Score: 118 bits (296), Expect = 4.740e-28
Identity = 80/152 (52.63%), Postives = 89/152 (58.55%), Query Frame = 1
Query: 1 LVGGSW-GAGGXXXXXXXXSFNYGDLTMEGRGSGGGGIGGPVRSASWAEKFVTKREEQSVLVRQLERELTSTVSALRDERREKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTTTLMXXXEALRTRCDRLSASREERAEEADKTVARLRE 453
+G SW G GG + G L G+G G RSASWAEK VTKREEQSVLV+QLEREL STVSAL+DERRE+R MTTTLM EAL++RCDRL ASREERAEEADKT+ARLRE
Sbjct: 482 FLGSSWAGVGGSSG-----GYQLGGLAAAGKG------GDAFRSASWAEKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRATVGDREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLRE 622
BLAST of mRNA_L-elsbetiae_contig5189.13273.1 vs. uniprot
Match:
A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)
HSP 1 Score: 118 bits (295), Expect = 6.440e-28
Identity = 81/152 (53.29%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 1 LVGGSW-GAGGXXXXXXXXSFNYGDLTMEGRGSGGGGIGGPVRSASWAEKFVTKREEQSVLVRQLERELTSTVSALRDERREKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTTTLMXXXEALRTRCDRLSASREERAEEADKTVARLRE 453
L+G SW G GG + G + GR + G G GG SASWA K VTKREEQSVLV+QLEREL STVSAL+DERRE+R MTTTLM EAL++RCDRL ASREERAEEADKT+ARLRE
Sbjct: 473 LLGSSWAGVGG----------SSGSYHLGGRAAAGEG-GGAFSSASWAAKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRAAVGYREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLRE 613
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5189.13273.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.74e-28 / Id = 52.63 Expect = 6.44e-28 / Id = 53.29 Sequence D8LTT2_ECTSI A0A6H5KDC5_9PHAE
Match Name E-value Identity Description
D8LTT2_ECTSI 4.740e-28 52.63 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC5_9PHAE 6.440e-28 53.29 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-28_002910.1
Exons 3
Model size 453
Cds size 453
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816531.0888941-CDS-L-elsbetiae_contig5189:10951..11122 1622816531.0888941-CDS-L-elsbetiae_contig5189:10951..11122 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5189 10952..11122 +
1691683626.918301-CDS-L-elsbetiae_contig5189:10951..11122 1691683626.918301-CDS-L-elsbetiae_contig5189:10951..11122 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5189 10952..11122 +
1622816531.0995984-CDS-L-elsbetiae_contig5189:11487..11642 1622816531.0995984-CDS-L-elsbetiae_contig5189:11487..11642 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5189 11488..11642 +
1691683626.9328399-CDS-L-elsbetiae_contig5189:11487..11642 1691683626.9328399-CDS-L-elsbetiae_contig5189:11487..11642 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5189 11488..11642 +
1622816531.1120949-CDS-L-elsbetiae_contig5189:12753..12880 1622816531.1120949-CDS-L-elsbetiae_contig5189:12753..12880 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5189 12754..12880 +
1691683626.942298-CDS-L-elsbetiae_contig5189:12753..12880 1691683626.942298-CDS-L-elsbetiae_contig5189:12753..12880 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5189 12754..12880 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5189.13273.1
>prot_L-elsbetiae_contig5189.13273.1 ID=prot_L-elsbetiae_contig5189.13273.1|Name=mRNA_L-elsbetiae_contig5189.13273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
LVGGSWGAGGGSWGGSGSSFNYGDLTMEGRGSGGGGIGGPVRSASWAEKF VTKREEQSVLVRQLERELTSTVSALRDERREKRGQAEALKSKLDKARGAA RDLETELERRERMTTTLMGELEALRTRCDRLSASREERAEEADKTVARLR E back to top mRNA from alignment at L-elsbetiae_contig5189:10952..12880+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5189.13273.1 ID=mRNA_L-elsbetiae_contig5189.13273.1|Name=mRNA_L-elsbetiae_contig5189.13273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1929bp|location=Sequence derived from alignment at L-elsbetiae_contig5189:10952..12880+ (Laminarionema elsbetiae ELsaHSoW15)CTCGTGGGGGGCTCTTGGGGCGCAGGCGGGGGCAGCTGGGGAGGCAGCGG
CAGCAGCTTTAACTACGGCGACTTGACGATGGAAGGAAGAGGAAGCGGGG
GTGGGGGCATTGGGGGTCCTGTCCGGAGCGCTTCCTGGGCCGAGAAGTTC
GTTACCAAGCGAGAGGAGCAG GTGAAGCCCAAGGGCTGTGCGGTAGGAAC
GCAGTCGCGATTTTTGCGTGCGTGCGTGCGTGTGTGTAAGTCCTCGTCGC
TCTAGCCAGCGATAGGTTTCGATTCTAAACGCGGTGTACACTAGTCCGTG
AGAGACACCGTTTTGTCTTTCAAACACTTCGTCGAGTTTTGGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGTCGGTGGTGTGCCGGAGCGTGCCGGTGAGTAGC
TAGGCGCCGGGTTTTGTTACAACTTTTCTTCGTCGTGTTTTGGTTGCTGC
TGCTGCTGCTACCACTGTTACTACTGCTGGTATCAGAGCGTGCTGGTGAG
ACAGCTGGAGCGCGAGCTGACGTCGACGGTTTCGGCCTTGCGAGACGAGC
GAAGAGAAAAGAGGGGCCAGGCGGAGGCTCTCAAGTCCAAGCTCGACAAG
GCCAGGGGCGCCGCCCGGGACCTGGAGACCGAGCTCGAGAG GTGCGACGG
AGGGAGGGAGGGGGGGCAGTGGCTGCAAGGCAGGGCAGCAGCTGCGAGGG
GCAGCATTATTTTTCTTGTTCAAGTTTCCGGGTCTCCGATCCTGGAAAAA
AAAAATTAGCCTCCATCTGAGTAGCCGGCTCGTTTGCGCCCCCTTAAAAA
ATCGCAAAATACTCGTCCGAGCGCTGGTAAACGTGTCGTAAGAAAAAAAA
AAAACGTAGATACCATGTTTATTTTTTCGCTGGGCACTGGCGCTGCCTAC
TACTGTGAGGGGAGCACATGTAGCGTTGGACGAAAGTCAATCTGAAGGAA
AAGAGAAGGGCCGCCGCGGGTGACGAGCTGCGCTGGTAATTGGGGTGGGG
GGTTTGGGTTTTGCGCTTGCTTTCTATCTTATTTTCAGCGATGCTTGCTA
CAAAACCCTTTTCGATTTTGCTCTCAAGAGGTTGGTTGGTTCCTCACGCG
TTCGAGCGCCGAGGACAGCACCAGAGTCGACTGGCTCCCTTCACCACTGC
AAGCGTGCCGATTACCCTCAGACGGTTAACACTTTTCAAAGTCATGTATA
CCTCGTACGTACACACCGGGCAACGAAATCTCGCATGGCGGGAACGTTCT
ACGTGTATAGTGGTCGCCCCGCTATTTACTGTGGGTCTCCCTCCGCTCTC
TGACACTTTTCAAAATCATACGTCATACACACACACACCCCGGTAAACGA
AACCTCGCATGGCGGGAACATTCTACGGGTAAATAAAGTGGTCATCCCAT
TACCATACCCACTACTATAGGGTGAGTCTCCCTCCGGTCTCTGTCTCTCT
CCTTCTTATGTATATTCTTCCTGCTTATCGCGTCTCTGTCTCTCTGCCTT
CCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTGCCTGCTGGCCCAACGAAA
ACAAAATAATTGTTGGCCGACCTCGCAAATCTTAAATCTTTGCAGGGGAG
ACGTCGAACTCTTCTGATATTATAGGTTGTTTTTCTGCTCGCTTCGCCAA
ATATTACGTCTCTGTACGGAATACCGTTTGAACCCCATATCGATTCCTTG
CTCTAGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTTTAAAAC
AGGCGAGAGCGCATGACGACGACCCTCATGGGAGAGCTGGAGGCCCTGCG
GACACGCTGCGACCGGCTGTCGGCGTCGCGGGAGGAGAGGGCCGAGGAAG
CGGACAAGACCGTGGCGCGCCTCCGGGAG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5189:10952..12880+
>mRNA_L-elsbetiae_contig5189.13273.1 ID=mRNA_L-elsbetiae_contig5189.13273.1|Name=mRNA_L-elsbetiae_contig5189.13273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig5189:10952..12880+ (Laminarionema elsbetiae ELsaHSoW15) CTCGTGGGGGGCTCTTGGGGCGCAGGCGGGGGCAGCTGGGGAGGCAGCGG CAGCAGCTTTAACTACGGCGACTTGACGATGGAAGGAAGAGGAAGCGGGG GTGGGGGCATTGGGGGTCCTGTCCGGAGCGCTTCCTGGGCCGAGAAGTTC GTTACCAAGCGAGAGGAGCAGCTCGTGGGGGGCTCTTGGGGCGCAGGCGG GGGCAGCTGGGGAGGCAGCGGCAGCAGCTTTAACTACGGCGACTTGACGA TGGAAGGAAGAGGAAGCGGGGGTGGGGGCATTGGGGGTCCTGTCCGGAGC GCTTCCTGGGCCGAGAAGTTCGTTACCAAGCGAGAGGAGCAGAGCGTGCT GGTGAGACAGCTGGAGCGCGAGCTGACGTCGACGGTTTCGGCCTTGCGAG ACGAGCGAAGAGAAAAGAGGGGCCAGGCGGAGGCTCTCAAGTCCAAGCTC GACAAGGCCAGGGGCGCCGCCCGGGACCTGGAGACCGAGCTCGAGAGAGC GTGCTGGTGAGACAGCTGGAGCGCGAGCTGACGTCGACGGTTTCGGCCTT GCGAGACGAGCGAAGAGAAAAGAGGGGCCAGGCGGAGGCTCTCAAGTCCA AGCTCGACAAGGCCAGGGGCGCCGCCCGGGACCTGGAGACCGAGCTCGAG AGGCGAGAGCGCATGACGACGACCCTCATGGGAGAGCTGGAGGCCCTGCG GACACGCTGCGACCGGCTGTCGGCGTCGCGGGAGGAGAGGGCCGAGGAAG CGGACAAGACCGTGGCGCGCCTCCGGGAGGCGAGAGCGCATGACGACGAC CCTCATGGGAGAGCTGGAGGCCCTGCGGACACGCTGCGACCGGCTGTCGG CGTCGCGGGAGGAGAGGGCCGAGGAAGCGGACAAGACCGTGGCGCGCCTC CGGGAG back to top