mRNA_L-elsbetiae_contig5077.13108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5077.13108.1
Unique NamemRNA_L-elsbetiae_contig5077.13108.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: D8LBW9_ECTSI (Novel cap binding protein nCBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW9_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 1.170e-136
Identity = 211/252 (83.73%), Postives = 222/252 (88.10%), Query Frame = 1
Query:  157 GHMHSSLEAAAVPAGTGPS---------SNNGAAAAPDGASGPAYESLYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNLGAASVREERGGGGFRLHPRGSG 885
            GH+HSSLE    PAG             + +G A   D ASGPAYESLYNEPED TGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNH+LRADQVPNATDVHLFRDGIKPTWED+SNSRGGQLLIRLKKGLASRAWESLVLAI+GEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGI+KIR++VKRLL+IPSFVQ+EYRRHQDNLGAASVREERGGGGF     G G
Sbjct:   40 GHLHSSLE---PPAGXXXXXXXXXXXXXATDGLA---DSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFG 285          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A835Z354_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z354_9STRA)

HSP 1 Score: 263 bits (672), Expect = 7.630e-83
Identity = 123/183 (67.21%), Postives = 150/183 (81.97%), Query Frame = 1
Query:  271 LYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
            LY+ PED TG  QT IQNRYCFWY +KG ++ +   +E YES IK + SFQTVEHFWRIYNH+ R DQVP  TD HLF+DGIKP WEDS N+RGG  ++RLKKGLASR  + L+LA++GEQFDVGNEICGAV+SVRYSEDV+ VWNR+A N E  DKIR+ ++R+LK+P+FVQLEYRRHQD++
Sbjct:   11 LYDSPEDTTGGTQTAIQNRYCFWYKQKGNKQLT---TEDYESSIKQLASFQTVEHFWRIYNHLQRPDQVPIGTDYHLFKDGIKPAWEDSHNARGGLWMMRLKKGLASR--QELLLAMIGEQFDVGNEICGAVMSVRYSEDVVYVWNRNADNREAADKIRDQIRRILKLPNFVQLEYRRHQDSM 188          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A7S2B9L2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9L2_9STRA)

HSP 1 Score: 235 bits (599), Expect = 4.620e-71
Identity = 107/197 (54.31%), Postives = 149/197 (75.63%), Query Frame = 1
Query:  247 ASGPAYES--LYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNLGAAS 831
            A+ P Y    L +EPED    +QT IQNRY FW+ ++  Q +S   ++ +++ ++ + SFQTV+HFWR+Y+H+ RA  +P  TD HLF+DGIKPTWED SN +GG+ +IRL+KGLA+R WE L+L IVGEQFDVGNE+CGAV+S+RY+ED+IS+WNR+A NTE   KIR+ ++RLL++P+F+  EY+RH D L   S
Sbjct:    8 ATAPRYSDAELVDEPEDLE--KQTAIQNRYVFWFMQR--QSKSAVGNDNFDANLQQIASFQTVQHFWRVYDHVQRATSLPQMTDFHLFKDGIKPTWEDPSNKQGGKWIIRLRKGLAARYWEELLLGIVGEQFDVGNEVCGAVLSIRYNEDIISIWNRNADNTEATSKIRDHMRRLLRLPAFISTEYKRHADALSDKS 200          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A6G0XTE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE8_9STRA)

HSP 1 Score: 231 bits (588), Expect = 6.280e-69
Identity = 99/176 (56.25%), Postives = 136/176 (77.27%), Query Frame = 1
Query:  292 PTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
            P    +  IQN YCFWY +K + K + D  E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IR+++++LL +P FV LEY+RH  +L
Sbjct:   14 PIPEGEAPIQNTYCFWYMKKNSGK-TLDDQESYEKSIKEIGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKSGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 188          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: W4FZB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZB5_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.420e-68
Identity = 101/179 (56.42%), Postives = 138/179 (77.09%), Query Frame = 1
Query:  283 PEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
            P D  G  +  IQN Y FWY +K + K  +D  E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAIVGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N+E   +IR+++++LL +P FV LEY+RH  +L
Sbjct:   11 PVDTAG--EVPIQNTYTFWYMKKNSGKALED-QESYEKSIKEISEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDTANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 186          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A485LDV3_9STRA (Aste57867_20004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDV3_9STRA)

HSP 1 Score: 228 bits (581), Expect = 8.040e-68
Identity = 99/177 (55.93%), Postives = 137/177 (77.40%), Query Frame = 1
Query:  289 DPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
            +P    ++ IQN YCFWY +K + K     +E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAIVGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IR+++++LL +P FV LEY+RH  +L
Sbjct:   13 EPIPDGESPIQNTYCFWYMKKNSGK-----TESYEKSIKELGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 184          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A1V9Z309_9STRA (Eukaryotic initiation factor 4E n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z309_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.220e-67
Identity = 96/172 (55.81%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  307 QTLIQNRYCFWYYRKGAQ-KESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
            +T +QN YCFWY +K    K + D  E+YE  IK +  F+TV+ FWR+Y+H++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG++SR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IR+++++LL +P FV LEY+RH  +L
Sbjct:    4 ETALQNAYCFWYMKKNTGGKAALDDQESYEKSIKELGEFKTVQGFWRLYDHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGISSRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVVLEYKRHDTSL 175          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A024TVS7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVS7_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.250e-67
Identity = 100/185 (54.05%), Postives = 140/185 (75.68%), Query Frame = 1
Query:  280 EPEDPTGTR-----QTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
            E + P+GT      ++ IQN Y FWY +K + K  +D  E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WEDS+N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IR++++++L +P F  LEY+RH  +L
Sbjct:    2 EADRPSGTASDATGESPIQNTYTFWYMKKNSGKALED-QESYEKSIKEIAEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDSANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFASLEYKRHDTSL 185          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: D0MYJ6_PHYIT (Eukaryotic initiation factor 4E, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0MYJ6_PHYIT)

HSP 1 Score: 225 bits (574), Expect = 1.620e-67
Identity = 98/174 (56.32%), Postives = 135/174 (77.59%), Query Frame = 1
Query:  298 GTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
            GT +T IQN Y FWY ++     +K  SE+YE  IK +  F+TV+ FW+IYNH++R + +PN  D HLF+ GIKP WEDS+N RGG+ ++RL+KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IR++++++L +P FV LEY+RH  +L
Sbjct:   18 GTTETPIQNMYTFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDSANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 189          
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A7S3LL32_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL32_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.130e-66
Identity = 95/186 (51.08%), Postives = 136/186 (73.12%), Query Frame = 1
Query:  313 LIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRH----QDNLGAASVREERGGGG 858
            L+ ++YCFWY R+G  +        YE  IK +  F TVE FW++YNH++R ++VP+ TD HLF+ GIKP WED +N  GG+ ++RL+KG+ASR WE+ +LAI+GE  DVGNEICGAV+SVRYSED+I+VWNR+A N E + KIR++++++L++P F ++EY+RH    QD+    +    RGGGG
Sbjct:   34 LLNSQYCFWYMRRGGGERKPSGPTDYEKSIKQIGEFATVEGFWQLYNHLVRPNEVPHTTDYHLFKSGIKPIWEDPANKMGGKWIVRLRKGIASRYWEAALLAIIGEDIDVGNEICGAVISVRYSEDIIAVWNRNADNVEAVQKIRDALRKILRVPDFAKVEYKRHDTALQDSSSFRNTNVWRGGGG 219          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBW9_ECTSI1.170e-13683.73Novel cap binding protein nCBP n=2 Tax=Ectocarpus ... [more]
A0A835Z354_9STRA7.630e-8367.21Putative eukaryotic initiation factor 4E n=1 Tax=T... [more]
A0A7S2B9L2_9STRA4.620e-7154.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0XTE8_9STRA6.280e-6956.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FZB5_9STRA4.420e-6856.42Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LDV3_9STRA8.040e-6855.93Aste57867_20004 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z309_9STRA1.220e-6755.81Eukaryotic initiation factor 4E n=1 Tax=Achlya hyp... [more]
A0A024TVS7_9STRA1.250e-6754.05Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
D0MYJ6_PHYIT1.620e-6756.32Eukaryotic initiation factor 4E, putative n=11 Tax... [more]
A0A7S3LL32_9STRA2.130e-6651.08Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5077contigL-elsbetiae_contig5077:6971..13165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.8
Seed ortholog evalue1.4e-111
Seed eggNOG ortholog2880.D8LBW9
Preferred nameEIF4E2
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000340,GO:0001701,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0007275,GO:0007553,GO:0007554,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010566,GO:0010605,GO:0010608,GO:0010629,GO:0010817,GO:0010893,GO:0017148,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019899,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031625,GO:0032268,GO:0032269,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090030,GO:0090031,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000026,GO:2000112,GO:2000113
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1669@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Ec32 ortholog descriptionnovel cap binding protein nCBP
Ec32 orthologEc-20_003570.1
Exons8
Model size1322
Cds size1203
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.9885068-UTR-L-elsbetiae_contig5077:6970..70871622816514.9885068-UTR-L-elsbetiae_contig5077:6970..7087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5077 6971..7087 +
1691683615.2432835-UTR-L-elsbetiae_contig5077:6970..70871691683615.2432835-UTR-L-elsbetiae_contig5077:6970..7087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5077 6971..7087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.9988225-CDS-L-elsbetiae_contig5077:7087..71161622816514.9988225-CDS-L-elsbetiae_contig5077:7087..7116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 7088..7116 +
1691683615.2547286-CDS-L-elsbetiae_contig5077:7087..71161691683615.2547286-CDS-L-elsbetiae_contig5077:7087..7116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 7088..7116 +
1622816515.0085578-CDS-L-elsbetiae_contig5077:7973..81481622816515.0085578-CDS-L-elsbetiae_contig5077:7973..8148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 7974..8148 +
1691683615.2696087-CDS-L-elsbetiae_contig5077:7973..81481691683615.2696087-CDS-L-elsbetiae_contig5077:7973..8148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 7974..8148 +
1622816515.022211-CDS-L-elsbetiae_contig5077:8601..87541622816515.022211-CDS-L-elsbetiae_contig5077:8601..8754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 8602..8754 +
1691683615.2791553-CDS-L-elsbetiae_contig5077:8601..87541691683615.2791553-CDS-L-elsbetiae_contig5077:8601..8754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 8602..8754 +
1622816515.0335386-CDS-L-elsbetiae_contig5077:9477..95491622816515.0335386-CDS-L-elsbetiae_contig5077:9477..9549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 9478..9549 +
1691683615.2878907-CDS-L-elsbetiae_contig5077:9477..95491691683615.2878907-CDS-L-elsbetiae_contig5077:9477..9549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 9478..9549 +
1622816515.0439823-CDS-L-elsbetiae_contig5077:10334..104711622816515.0439823-CDS-L-elsbetiae_contig5077:10334..10471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 10335..10471 +
1691683615.2961602-CDS-L-elsbetiae_contig5077:10334..104711691683615.2961602-CDS-L-elsbetiae_contig5077:10334..10471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 10335..10471 +
1622816515.0543923-CDS-L-elsbetiae_contig5077:11462..115681622816515.0543923-CDS-L-elsbetiae_contig5077:11462..11568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 11463..11568 +
1691683615.3066988-CDS-L-elsbetiae_contig5077:11462..115681691683615.3066988-CDS-L-elsbetiae_contig5077:11462..11568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 11463..11568 +
1622816515.0660937-CDS-L-elsbetiae_contig5077:11934..121431622816515.0660937-CDS-L-elsbetiae_contig5077:11934..12143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 11935..12143 +
1691683615.315152-CDS-L-elsbetiae_contig5077:11934..121431691683615.315152-CDS-L-elsbetiae_contig5077:11934..12143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 11935..12143 +
1622816515.0779717-CDS-L-elsbetiae_contig5077:12843..131651622816515.0779717-CDS-L-elsbetiae_contig5077:12843..13165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 12844..13165 +
1691683615.3242373-CDS-L-elsbetiae_contig5077:12843..131651691683615.3242373-CDS-L-elsbetiae_contig5077:12843..13165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5077 12844..13165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5077.13108.1prot_L-elsbetiae_contig5077.13108.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5077 7088..13165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5077.13108.1

>prot_L-elsbetiae_contig5077.13108.1 ID=prot_L-elsbetiae_contig5077.13108.1|Name=mRNA_L-elsbetiae_contig5077.13108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=401bp
MLEQNMLGESLGEGHMHSSLEAAAVPAGTGPSSNNGAAAAPDGASGPAYE
SLYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDS
FQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLI
RLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSA
SNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNLGAASVREERGGGGFRL
HPRGSGLGVVVVVVVAVALPGAAAALGCATGPVVRGVAMIITTRTATVGG
ARLGGEACHRKPGPGGHPRRGTETVTEGGSAEERAEAGGSDPLQGDGLSG
GRRRKREEEEEGEGEARTTEGAGERGEMGGARALRGETAVIVRRIWRSGA
R
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mRNA from alignment at L-elsbetiae_contig5077:6971..13165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5077.13108.1 ID=mRNA_L-elsbetiae_contig5077.13108.1|Name=mRNA_L-elsbetiae_contig5077.13108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6195bp|location=Sequence derived from alignment at L-elsbetiae_contig5077:6971..13165+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTGTTGAAGGAGCTCCATACACTCCACCACGCCTTTTCCTTTGGGCTC GTTGTCCCTCCTCTAGATCACTGCTCTCAGGAAGGTTTGAGGGAGACCGC GGCTGAAGCTGAAGGATATGCTGGAACAAAATATGCTTGGAGAAAGGTAG ATACACACCACGGGTCCCATGGGCGCAGGTTTTGGCGGCGGTACCCAGAA ACACACGAGGCTAGCTTTCAGCATCTAACTGTGAAGACCCTCTGACATTG GTAGCTTCATGCTCGGTTGGTGTAGAGATGTCGCAGGTGTGTAGATATCA AGCCAAAGTTGGTCTATCTGCTTGGCAGCGGCGGCATCGCACACCCTCTT CTCTGAACAGCGTTTGCCGAGCTTTCTCCGCCACCGTCCCAGGCAACGCC CGTTCTGTGTGTTAGATTGGACATGGTGCCTTTGCTTCTTCGAATGGGCG TTGATGCAGGCGGTCTGGCGTGGCGCCATGTTTCAGCCGCGGCAAAAGTG TCTGGTTTTTGTTGCGAGTGTTTGGGGTCGTTTTCTCCTGCGTCTCTCGG CCCCAACTTCACCTGGAAGCACCTCCGCCTCCGACGCGCCAGGAGAGAGA AAAGCTAGCCTAGCCTAGCCTGGATTTCAACATGCGTACCCCCGTAGTGC CCCTGATGTCGTGTAGGTTACGGTCGTTCATCTCTCTTTGGCTCTTGCTT GTCACGCCCGCTGTTCCATCAGTATGCATATTTCAGACACATGTTCCTGC AAATGGCACCGAGTCCAAGCAGTACTTGAAAAGCTTGAAAGCGGGTGGTT GACCCGAGGTTGTATCTAGACAGACTACATATCTATGGACTAAAATAGAG ATCATGATAACAGAAGTATCCGAATCGTCGCCCCACTTTATGGACGTCCT CACTTGTCCGGCGGCCGTTTCCTCTGCTTGTCTATTTTGTGTGTGCTATT GTGTCCTCACTGAATACACACATCCTGCTGCTGTGTTTTATTGGTGTCAT CAGCCTGGGGGAGGGGCACATGCACTCATCTTTGGAGGCAGCAGCAGTAC CAGCAGGAACGGGGCCCTCGAGCAACAACGGCGCAGCCGCTGCCCCAGAT GGCGCAAGCGGCCCGGCATATGAGTCCCTGTACAACGAGCCGGAGGACCC GACAGGGACGCGCCAGACACTCATACAGGTGTGTGTGTGTGTGTCTTGTG TTTGTGTGTGTGTGTGTGTGTTCTGTGCCTCGTGTTCCCGTGTCTTGTGT GTGCGTGAGCACTGCGCCGCGCTAGCCGGCGCTAACCGGAGGACCTTTTG AAATACCCGCTGGTCCCAACGGTTCGGTCGACGACCAAAGTTATGCCGCG AAGGGCCTTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTGTAATCATGCG TTGGTTGCGTTCGTGGTTCCATAAATACTTCATATTGCCAGGCTTAGATC TACGTAACATGCACCTACATTATTTATGCAGCTTCGAGCCAACGCATGAA AGGCTGATTTGCAGGCCAAAGAGGAGGTACGGTTCCTTGTCCTGCTGTGT CCAAGCCCTGGCAGCTGGTGCCAAAACGCCGCATGAATACCTGTCGCCCG TGCACACCCCCGGCGCCCGTCCACTCGCCAGAATCGGTACTGCTTCTGGT ACTACCGCAAGGGCGCGCAGAAGGAGAGCAAGGACCCTAGCGAGGCGTAC GAGAGCGGCATCAAGGTCGTGGACAGCTTCCAGACGGTGGAGCACTTCTG GCGCATCTACAACCACATGCTGCGCGCAGATCAGGTATTGTTCCAAGAAC AGCAGTTGCTGCATCCTGTTTGGGGATCACGTATGTGCACATATGTGAGT ACGTTACCTGACATGGTGCTTCTGCTGCGGAAACTACTGGTGCTGCTGTG TGCTCTTTCGGACACAAAGGTAGCAGGCTAGACTGGCTTCTGCCCGTCCC AAATTGGCTGCATATCTACTTTGGTCCTTGATGCATGATGTCGACACGGA GAACAGAGCAGAGAGCGTCAACCCGCTCTTGATGTATATAATCTACAGCA GTGTTAAATATTACCTTGAAATGAAATCGAAATACATTCAAAACACGAGC GGTGCAGCAACGGCAGGCTGCGAAGCATTAGTCTGTGATGTGCTGGCAGA GCAGCCGGTACACACGATGCATCGCACCCCCGAAACGCGAACCCACTTGG CACGCATGCATGCACCTCCACCCCGAGAAGAATACCGCACCATAAAAGCT TGGAGGTGTTCAAAACAGTACGTAAGACGCCGCATCTGATCGAAAACCAG TGTGCCTGTTGCGGCTTCGCTTTCGACTCTTGCCACGAGTAGGCTGGCTA CCCATACATAAGCCCACCCTGTTCCGTGCGGCGTGCTCTCGCCCCGAACG CTATCTAGCTGATGTTATATGTGTCTCGTGTGTATTTATGTTGTGTCTCG TGACCGCTCGCCCGGCTTTCCGCCCCGCCCCGTCTCTTGCTCCCTTGCAA CCCCCAGGTACCGAACGCCACCGATGTGCACCTCTTCAGGGACGGCATCA AGCCCACCTGGGAAGACTCTTCCAACTCGGTGAGGGGAATATCACAGCAA AAGCAGTGTTACATTTAGGCGCAGTAGCTTTTGCCACCCAGTGACGGCTG TGCGATAAGTGGAGGTCCCGCCCGCTTTTAGGGCCAGCTCTGCTATGCAG GAGGAGTGTGTGCGTGTGCTGCGGTGGGTGTGCGTGCGTGAGTGCGCACG AGATCCCGCCAAGCACCTGTTTTTCGTTGTTGGCGGGGAGGTGCCGAACA GCTGGCAGCGGGTGGTTGGGATCTTGTACCTAGGCAAATCAGATTTGGAG ACACGCCCCCCCCCAGCAGGCACGCCGACGGATGTAGAAACCTGCATACT TGTACACGATTTTCTCTAGACTCCGTTCGAAAGCAGCAGCAGCAGCGGCG GCGGCGGCGGCAGGGTTGTGCGTAATTCTTCTCTGCGGTTCACAATTTTT CCGATATCCATCGTGTGTTCTCATATCCTGTAGTAGGTGTGGTACATACT CTGTATTAAAAAAGGTAAGAGGTGGGGTGGGTGTGATAATTATCAGTAAT TTGGTTTCAGAAGGGGGGCGACATTGGGCATTCCCAGGAGGCGTTTCTCT CCATCGAAAGGGCGACAGCGCTCGCGTCTGTTTTGTTGGCGGCGTGATAA GGATATGGGTGTTGTTTTGTTGTGTACATACGTATGTTGATCTTCCCGGA TGTGATGTTTACCCTTTTTTTCAGAGAGGCGTGTTGGCGGCGTGATATGG ATGTTGTGTTGTTGTACATACATATGCTGATCTTCCCGGATGCGGTGTTT ACCCCTTTTTTCAGAGAGGCGGCCAGCTGCTAATCCGCCTTAAGAAGGGA CTTGCGAGCCGCGCGTGGGAGAGCCTGGTGCTGGCCATCGTGGGAGAGCA GTTCGACGTCGGAAACGAGATTTGCGGCGCCGTTGTGTCGGTCCGGTACA GGTAATATGACGTCACGTACACGTACATACACGGAACACGAACACCCGTG TAGCCTGTGTATCCAGCCGTAACTTGTATGGTATGTACCGGTAGATGAAC TCCTGCCCCCGTCGTGCTTCTGAATCTTACTTGACATTCAATTGATTAGA AGCGAGTTGCGTTTCAGCCACAATTTTTTCTATTTGTGCTCATTCGGTGC TTGTTTACCAACTGTGTGCCCCGGTAAGGTCACATGTTGCTGTTGTTTCT CACATTAGCTATCTAGTCCAAAACATCCTTGGGGGCCCGCGGTCACCAAA AAAAGGCACACTCGACACCGCGGAAGGAAAAATATCTTCTGCTGGATAGC GTAGACAATGCCGACACCCAAAAGCTTGCGAGGGTGCGCCCGCCCCGCGC CGTATGTATCGTGCGATCGACAAATACGTATGTACGAGTGGCAACTCGCG TTTGCCCACAGCTTTTATGTAAGAGTCGGCGCGCCGCGGATTTAGCGGCC TGGACTTGCTAATTGAGCAATTACGGAGTACAAAACGTGCAAACCCCCGG CGGCACAGAATGCCGGCTCTTCTGCCGGCGCTGCTGCACGCATGCCCCAG CTCACAGGCCGTTCACACGCGCAGTCACGCTCACTGCACGTCTCCCCAAC GTCCCTCGTGTTAAATGTTGCGTGTCGGCTATGTTCATGTGTCGTATGGT ATACTACTTGCTGTAGGGGTGAAACGAAGCGCGCGGCAGGTCGTGTTGTC TGACCGCCGCCGTCTTGGGTGTCCACAGCAGTAGTGGTACTGCTGTTGTC TCTTTTTCGTGTACCTTGCCCCTGGCGTGTCTAGCGGCCACGGTCGTTTA ATTTTCTCTTTTTTTTCTGGTTCTTGTTATTGGCACATGGCATGGTGCTG GTTCTTGCGTATCGCCGCCGCCGCCGCCGCCGCTGTCGGCTGACGCTGTT TCGTTGCGCGACGCGCATGTCCCGTGATGTTACCTCCGATAGCGAGGACG TGATCTCGGTCTGGAATCGATCGGCGTCGAACACCGAGGGCATCGACAAG ATCCGCGAGTCCGTGAAGCGTCTCCTCAAAATACCGTCCTTCGTGCAGGT GGGTTGTGTTGTCGCGACCCCGCGCGGTGTCCCCGCCTGTTTTGGAACCA AGCTGTTGATTCGAATGACTAAATTCTACTTTATTCACTACCTACAACGC CACGAGCACTTCGCGTAGAAGAAATACATTACACGTGTGTGTCAACAAAA CAGCGACTAGAAGCTTGGTTTGCTGCGAAGCGTCGTCCGGGCGTACAAGT GCAGCTGCTTTACTGCACCGCCGTGACAGCGTGAGGGTTATCGTCAGCCC GGCTCTGCCCCCCCCCCGAACTCCCCCCACTGGCCCCCAACATACGCTAC TTTCCGCCCGCCCGCCCGCACTCCCGCCGGCTATCGCGACGACCGCGGCC ACGAAAAAATGCAGCTGGAGTACAGGCGCCACCAAGACAACCTAGGGGCG GCCAGCGTCAGAGAAGAAAGGGGGGGGGGGGGGTTCCGGCTGCATCCCCG GGGTTCGGGCCTCGGGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCCCTCC CGGGGGCGGCGGCGGCGCTTGGTTGCGCAACCGGGCCGGTGGTGCGCGGG GTGGCGATGATCATCACCACAAGGTGGGGCGGAAATCATGGAATTTATTT CTTATTTAGGTACGACCGTTATCACGAATGCTTGGGGCTTTAGGCCTCCA AGAGTTGTCTGGCGTACACATGGATGTGTGTTATGTACAGAGTAGCGATG GATTTTTTTAGGCCAGCACGCGAGTCGTGGATGAGGTAAAAGTAGCGTAC ATACATCGATACATAGCCCTGTTGTTGTTACCCCGACTCCGTTTCACCTA TCGTACACGCCGCTGCACCCTTTTTCACGCGTTCAGCCACACGAGGACTC TGTGGTGGCGATATTTTTGCTGCCGCAACACAACACACGTCAGCAGCATA CAGCAGTATATAATACGTTCACGACCGTGCTCACGTCGACCCCCCCCCCC CCCCCCCCCCCCCCCCCCACAACCTTATACCGTTGCCGCCGCTCCCACCG CCCCCCCCCCCGGCTAAAAAAAAAACAATCCCTTAACAGCGACATACACC AGTTTTTAATACGTTCTCGCCCCGCCCCCCGTCCCCCCCCCCCCCCCCCC CCGCCCCACAGCAGTATCTAGTACGTTTACGACCGTGCTCACGTCACCCC CCGCTGCGAGTAACAAGTAATACCGTTTACCATTTGAAGTCTCTCTCGAC AGTTCTGCCGTCCTCAATGGAGAAGTAATATGTATGTCGTGCACGTGATG TCGCGTGTGTCGTGCGTGCACAGGACAGCGACCGTGGGGGGGGCGCGGCT GGGGGGGGAGGCATGCCACAGGAAACCTGGGCCCGGGGGCCACCCGAGGC GAGGGACCGAGACCGTGACGGAGGGGGGTTCCGCGGAGGAGCGGGCGGAG GCGGGGGGTTCAGACCCCCTCCAGGGAGATGGGCTGAGCGGCGGGCGGCG GCGGAAGAGAGAGGAGGAGGAGGAGGGGGAGGGGGAGGCAAGGACTACGG AGGGGGCGGGGGAGAGAGGGGAGATGGGGGGGGCAAGGGCTTTGCGCGGG GAGACCGCGGTGATCGTGAGAAGGATCTGGAGAAGTGGGGCAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5077:6971..13165+

>mRNA_L-elsbetiae_contig5077.13108.1 ID=mRNA_L-elsbetiae_contig5077.13108.1|Name=mRNA_L-elsbetiae_contig5077.13108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2406bp|location=Sequence derived from alignment at L-elsbetiae_contig5077:6971..13165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGAACAAAATATGCTTGGAGAAAGATGCTGGAACAAAATATGCTT
GGAGAAAGCCTGGGGGAGGGGCACATGCACTCATCTTTGGAGGCAGCAGC
AGTACCAGCAGGAACGGGGCCCTCGAGCAACAACGGCGCAGCCGCTGCCC
CAGATGGCGCAAGCGGCCCGGCATATGAGTCCCTGTACAACGAGCCGGAG
GACCCGACAGGGACGCGCCAGACACTCATACAGCCTGGGGGAGGGGCACA
TGCACTCATCTTTGGAGGCAGCAGCAGTACCAGCAGGAACGGGGCCCTCG
AGCAACAACGGCGCAGCCGCTGCCCCAGATGGCGCAAGCGGCCCGGCATA
TGAGTCCCTGTACAACGAGCCGGAGGACCCGACAGGGACGCGCCAGACAC
TCATACAGAATCGGTACTGCTTCTGGTACTACCGCAAGGGCGCGCAGAAG
GAGAGCAAGGACCCTAGCGAGGCGTACGAGAGCGGCATCAAGGTCGTGGA
CAGCTTCCAGACGGTGGAGCACTTCTGGCGCATCTACAACCACATGCTGC
GCGCAGATCAGAATCGGTACTGCTTCTGGTACTACCGCAAGGGCGCGCAG
AAGGAGAGCAAGGACCCTAGCGAGGCGTACGAGAGCGGCATCAAGGTCGT
GGACAGCTTCCAGACGGTGGAGCACTTCTGGCGCATCTACAACCACATGC
TGCGCGCAGATCAGGTACCGAACGCCACCGATGTGCACCTCTTCAGGGAC
GGCATCAAGCCCACCTGGGAAGACTCTTCCAACTCGGTACCGAACGCCAC
CGATGTGCACCTCTTCAGGGACGGCATCAAGCCCACCTGGGAAGACTCTT
CCAACTCGAGAGGCGGCCAGCTGCTAATCCGCCTTAAGAAGGGACTTGCG
AGCCGCGCGTGGGAGAGCCTGGTGCTGGCCATCGTGGGAGAGCAGTTCGA
CGTCGGAAACGAGATTTGCGGCGCCGTTGTGTCGGTCCGGTACAGAGAGG
CGGCCAGCTGCTAATCCGCCTTAAGAAGGGACTTGCGAGCCGCGCGTGGG
AGAGCCTGGTGCTGGCCATCGTGGGAGAGCAGTTCGACGTCGGAAACGAG
ATTTGCGGCGCCGTTGTGTCGGTCCGGTACAGCGAGGACGTGATCTCGGT
CTGGAATCGATCGGCGTCGAACACCGAGGGCATCGACAAGATCCGCGAGT
CCGTGAAGCGTCTCCTCAAAATACCGTCCTTCGTGCAGCGAGGACGTGAT
CTCGGTCTGGAATCGATCGGCGTCGAACACCGAGGGCATCGACAAGATCC
GCGAGTCCGTGAAGCGTCTCCTCAAAATACCGTCCTTCGTGCAGCTGGAG
TACAGGCGCCACCAAGACAACCTAGGGGCGGCCAGCGTCAGAGAAGAAAG
GGGGGGGGGGGGGTTCCGGCTGCATCCCCGGGGTTCGGGCCTCGGGGTGG
TGGTGGTGGTGGTGGTGGCGGTGGCCCTCCCGGGGGCGGCGGCGGCGCTT
GGTTGCGCAACCGGGCCGGTGGTGCGCGGGGTGGCGATGATCATCACCAC
AAGCTGGAGTACAGGCGCCACCAAGACAACCTAGGGGCGGCCAGCGTCAG
AGAAGAAAGGGGGGGGGGGGGGTTCCGGCTGCATCCCCGGGGTTCGGGCC
TCGGGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCCCTCCCGGGGGCGGCG
GCGGCGCTTGGTTGCGCAACCGGGCCGGTGGTGCGCGGGGTGGCGATGAT
CATCACCACAAGGACAGCGACCGTGGGGGGGGCGCGGCTGGGGGGGGAGG
CATGCCACAGGAAACCTGGGCCCGGGGGCCACCCGAGGCGAGGGACCGAG
ACCGTGACGGAGGGGGGTTCCGCGGAGGAGCGGGCGGAGGCGGGGGGTTC
AGACCCCCTCCAGGGAGATGGGCTGAGCGGCGGGCGGCGGCGGAAGAGAG
AGGAGGAGGAGGAGGGGGAGGGGGAGGCAAGGACTACGGAGGGGGCGGGG
GAGAGAGGGGAGATGGGGGGGGCAAGGGCTTTGCGCGGGGAGACCGCGGT
GATCGTGAGAAGGATCTGGAGAAGTGGGGCAAGGGACAGCGACCGTGGGG
GGGGCGCGGCTGGGGGGGGAGGCATGCCACAGGAAACCTGGGCCCGGGGG
CCACCCGAGGCGAGGGACCGAGACCGTGACGGAGGGGGGTTCCGCGGAGG
AGCGGGCGGAGGCGGGGGGTTCAGACCCCCTCCAGGGAGATGGGCTGAGC
GGCGGGCGGCGGCGGAAGAGAGAGGAGGAGGAGGAGGGGGAGGGGGAGGC
AAGGACTACGGAGGGGGCGGGGGAGAGAGGGGAGATGGGGGGGGCAAGGG
CTTTGCGCGGGGAGACCGCGGTGATCGTGAGAAGGATCTGGAGAAGTGGG
GCAAGG
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