|
Homology
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: D8LBW9_ECTSI (Novel cap binding protein nCBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW9_ECTSI) HSP 1 Score: 412 bits (1058), Expect = 1.170e-136 Identity = 211/252 (83.73%), Postives = 222/252 (88.10%), Query Frame = 1
Query: 157 GHMHSSLEAAAVPAGTGPS---------SNNGAAAAPDGASGPAYESLYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNLGAASVREERGGGGFRLHPRGSG 885
GH+HSSLE PAG + +G A D ASGPAYESLYNEPED TGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNH+LRADQVPNATDVHLFRDGIKPTWED+SNSRGGQLLIRLKKGLASRAWESLVLAI+GEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGI+KIR++VKRLL+IPSFVQ+EYRRHQDNLGAASVREERGGGGF G G
Sbjct: 40 GHLHSSLE---PPAGXXXXXXXXXXXXXATDGLA---DSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFG 285
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A835Z354_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z354_9STRA) HSP 1 Score: 263 bits (672), Expect = 7.630e-83 Identity = 123/183 (67.21%), Postives = 150/183 (81.97%), Query Frame = 1
Query: 271 LYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
LY+ PED TG QT IQNRYCFWY +KG ++ + +E YES IK + SFQTVEHFWRIYNH+ R DQVP TD HLF+DGIKP WEDS N+RGG ++RLKKGLASR + L+LA++GEQFDVGNEICGAV+SVRYSEDV+ VWNR+A N E DKIR+ ++R+LK+P+FVQLEYRRHQD++
Sbjct: 11 LYDSPEDTTGGTQTAIQNRYCFWYKQKGNKQLT---TEDYESSIKQLASFQTVEHFWRIYNHLQRPDQVPIGTDYHLFKDGIKPAWEDSHNARGGLWMMRLKKGLASR--QELLLAMIGEQFDVGNEICGAVMSVRYSEDVVYVWNRNADNREAADKIRDQIRRILKLPNFVQLEYRRHQDSM 188
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A7S2B9L2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9L2_9STRA) HSP 1 Score: 235 bits (599), Expect = 4.620e-71 Identity = 107/197 (54.31%), Postives = 149/197 (75.63%), Query Frame = 1
Query: 247 ASGPAYES--LYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNLGAAS 831
A+ P Y L +EPED +QT IQNRY FW+ ++ Q +S ++ +++ ++ + SFQTV+HFWR+Y+H+ RA +P TD HLF+DGIKPTWED SN +GG+ +IRL+KGLA+R WE L+L IVGEQFDVGNE+CGAV+S+RY+ED+IS+WNR+A NTE KIR+ ++RLL++P+F+ EY+RH D L S
Sbjct: 8 ATAPRYSDAELVDEPEDLE--KQTAIQNRYVFWFMQR--QSKSAVGNDNFDANLQQIASFQTVQHFWRVYDHVQRATSLPQMTDFHLFKDGIKPTWEDPSNKQGGKWIIRLRKGLAARYWEELLLGIVGEQFDVGNEVCGAVLSIRYNEDIISIWNRNADNTEATSKIRDHMRRLLRLPAFISTEYKRHADALSDKS 200
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A6G0XTE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE8_9STRA) HSP 1 Score: 231 bits (588), Expect = 6.280e-69 Identity = 99/176 (56.25%), Postives = 136/176 (77.27%), Query Frame = 1
Query: 292 PTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
P + IQN YCFWY +K + K + D E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR+++++LL +P FV LEY+RH +L
Sbjct: 14 PIPEGEAPIQNTYCFWYMKKNSGK-TLDDQESYEKSIKEIGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKSGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 188
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: W4FZB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZB5_9STRA) HSP 1 Score: 228 bits (581), Expect = 4.420e-68 Identity = 101/179 (56.42%), Postives = 138/179 (77.09%), Query Frame = 1
Query: 283 PEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
P D G + IQN Y FWY +K + K +D E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAIVGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N+E +IR+++++LL +P FV LEY+RH +L
Sbjct: 11 PVDTAG--EVPIQNTYTFWYMKKNSGKALED-QESYEKSIKEISEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDTANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 186
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A485LDV3_9STRA (Aste57867_20004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDV3_9STRA) HSP 1 Score: 228 bits (581), Expect = 8.040e-68 Identity = 99/177 (55.93%), Postives = 137/177 (77.40%), Query Frame = 1
Query: 289 DPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
+P ++ IQN YCFWY +K + K +E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAIVGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR+++++LL +P FV LEY+RH +L
Sbjct: 13 EPIPDGESPIQNTYCFWYMKKNSGK-----TESYEKSIKELGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 184
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A1V9Z309_9STRA (Eukaryotic initiation factor 4E n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z309_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.220e-67 Identity = 96/172 (55.81%), Postives = 135/172 (78.49%), Query Frame = 1
Query: 307 QTLIQNRYCFWYYRKGAQ-KESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
+T +QN YCFWY +K K + D E+YE IK + F+TV+ FWR+Y+H++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG++SR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR+++++LL +P FV LEY+RH +L
Sbjct: 4 ETALQNAYCFWYMKKNTGGKAALDDQESYEKSIKELGEFKTVQGFWRLYDHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGISSRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVVLEYKRHDTSL 175
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A024TVS7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVS7_9STRA) HSP 1 Score: 226 bits (577), Expect = 1.250e-67 Identity = 100/185 (54.05%), Postives = 140/185 (75.68%), Query Frame = 1
Query: 280 EPEDPTGTR-----QTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
E + P+GT ++ IQN Y FWY +K + K +D E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WEDS+N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR++++++L +P F LEY+RH +L
Sbjct: 2 EADRPSGTASDATGESPIQNTYTFWYMKKNSGKALED-QESYEKSIKEIAEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDSANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFASLEYKRHDTSL 185
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: D0MYJ6_PHYIT (Eukaryotic initiation factor 4E, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0MYJ6_PHYIT) HSP 1 Score: 225 bits (574), Expect = 1.620e-67 Identity = 98/174 (56.32%), Postives = 135/174 (77.59%), Query Frame = 1
Query: 298 GTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNL 819
GT +T IQN Y FWY ++ +K SE+YE IK + F+TV+ FW+IYNH++R + +PN D HLF+ GIKP WEDS+N RGG+ ++RL+KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR++++++L +P FV LEY+RH +L
Sbjct: 18 GTTETPIQNMYTFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDSANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 189
BLAST of mRNA_L-elsbetiae_contig5077.13108.1 vs. uniprot
Match: A0A7S3LL32_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL32_9STRA) HSP 1 Score: 223 bits (569), Expect = 2.130e-66 Identity = 95/186 (51.08%), Postives = 136/186 (73.12%), Query Frame = 1
Query: 313 LIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLIRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRLLKIPSFVQLEYRRH----QDNLGAASVREERGGGG 858
L+ ++YCFWY R+G + YE IK + F TVE FW++YNH++R ++VP+ TD HLF+ GIKP WED +N GG+ ++RL+KG+ASR WE+ +LAI+GE DVGNEICGAV+SVRYSED+I+VWNR+A N E + KIR++++++L++P F ++EY+RH QD+ + RGGGG
Sbjct: 34 LLNSQYCFWYMRRGGGERKPSGPTDYEKSIKQIGEFATVEGFWQLYNHLVRPNEVPHTTDYHLFKSGIKPIWEDPANKMGGKWIVRLRKGIASRYWEAALLAIIGEDIDVGNEICGAVISVRYSEDIIAVWNRNADNVEAVQKIRDALRKILRVPDFAKVEYKRHDTALQDSSSFRNTNVWRGGGG 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 409.8 |
Seed ortholog evalue | 1.4e-111 |
Seed eggNOG ortholog | 2880.D8LBW9 |
Preferred name | EIF4E2 |
KEGG ko | ko:K03259 |
KEGG Pathway | ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910 |
KEGG Module | M00428 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000339,GO:0000340,GO:0001701,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0007275,GO:0007553,GO:0007554,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010566,GO:0010605,GO:0010608,GO:0010629,GO:0010817,GO:0010893,GO:0017148,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019899,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031625,GO:0032268,GO:0032269,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090030,GO:0090031,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000026,GO:2000112,GO:2000113 |
EggNOG free text desc. | translation initiation factor activity |
EggNOG OGs | COG5053@1,KOG1669@2759 |
COG Functional cat. | J |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko03012,ko03019 |
Ec32 ortholog description | novel cap binding protein nCBP |
Ec32 ortholog | Ec-20_003570.1 |
Exons | 8 |
Model size | 1322 |
Cds size | 1203 |
Stop | 0 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816514.9885068-UTR-L-elsbetiae_contig5077:6970..7087 | 1622816514.9885068-UTR-L-elsbetiae_contig5077:6970..7087 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5077 6971..7087 + |
1691683615.2432835-UTR-L-elsbetiae_contig5077:6970..7087 | 1691683615.2432835-UTR-L-elsbetiae_contig5077:6970..7087 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5077 6971..7087 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816514.9988225-CDS-L-elsbetiae_contig5077:7087..7116 | 1622816514.9988225-CDS-L-elsbetiae_contig5077:7087..7116 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 7088..7116 + |
1691683615.2547286-CDS-L-elsbetiae_contig5077:7087..7116 | 1691683615.2547286-CDS-L-elsbetiae_contig5077:7087..7116 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 7088..7116 + |
1622816515.0085578-CDS-L-elsbetiae_contig5077:7973..8148 | 1622816515.0085578-CDS-L-elsbetiae_contig5077:7973..8148 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 7974..8148 + |
1691683615.2696087-CDS-L-elsbetiae_contig5077:7973..8148 | 1691683615.2696087-CDS-L-elsbetiae_contig5077:7973..8148 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 7974..8148 + |
1622816515.022211-CDS-L-elsbetiae_contig5077:8601..8754 | 1622816515.022211-CDS-L-elsbetiae_contig5077:8601..8754 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 8602..8754 + |
1691683615.2791553-CDS-L-elsbetiae_contig5077:8601..8754 | 1691683615.2791553-CDS-L-elsbetiae_contig5077:8601..8754 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 8602..8754 + |
1622816515.0335386-CDS-L-elsbetiae_contig5077:9477..9549 | 1622816515.0335386-CDS-L-elsbetiae_contig5077:9477..9549 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 9478..9549 + |
1691683615.2878907-CDS-L-elsbetiae_contig5077:9477..9549 | 1691683615.2878907-CDS-L-elsbetiae_contig5077:9477..9549 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 9478..9549 + |
1622816515.0439823-CDS-L-elsbetiae_contig5077:10334..10471 | 1622816515.0439823-CDS-L-elsbetiae_contig5077:10334..10471 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 10335..10471 + |
1691683615.2961602-CDS-L-elsbetiae_contig5077:10334..10471 | 1691683615.2961602-CDS-L-elsbetiae_contig5077:10334..10471 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 10335..10471 + |
1622816515.0543923-CDS-L-elsbetiae_contig5077:11462..11568 | 1622816515.0543923-CDS-L-elsbetiae_contig5077:11462..11568 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 11463..11568 + |
1691683615.3066988-CDS-L-elsbetiae_contig5077:11462..11568 | 1691683615.3066988-CDS-L-elsbetiae_contig5077:11462..11568 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 11463..11568 + |
1622816515.0660937-CDS-L-elsbetiae_contig5077:11934..12143 | 1622816515.0660937-CDS-L-elsbetiae_contig5077:11934..12143 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 11935..12143 + |
1691683615.315152-CDS-L-elsbetiae_contig5077:11934..12143 | 1691683615.315152-CDS-L-elsbetiae_contig5077:11934..12143 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 11935..12143 + |
1622816515.0779717-CDS-L-elsbetiae_contig5077:12843..13165 | 1622816515.0779717-CDS-L-elsbetiae_contig5077:12843..13165 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 12844..13165 + |
1691683615.3242373-CDS-L-elsbetiae_contig5077:12843..13165 | 1691683615.3242373-CDS-L-elsbetiae_contig5077:12843..13165 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5077 12844..13165 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5077.13108.1 >prot_L-elsbetiae_contig5077.13108.1 ID=prot_L-elsbetiae_contig5077.13108.1|Name=mRNA_L-elsbetiae_contig5077.13108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=401bp
MLEQNMLGESLGEGHMHSSLEAAAVPAGTGPSSNNGAAAAPDGASGPAYE SLYNEPEDPTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDS FQTVEHFWRIYNHMLRADQVPNATDVHLFRDGIKPTWEDSSNSRGGQLLI RLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSA SNTEGIDKIRESVKRLLKIPSFVQLEYRRHQDNLGAASVREERGGGGFRL HPRGSGLGVVVVVVVAVALPGAAAALGCATGPVVRGVAMIITTRTATVGG ARLGGEACHRKPGPGGHPRRGTETVTEGGSAEERAEAGGSDPLQGDGLSG GRRRKREEEEEGEGEARTTEGAGERGEMGGARALRGETAVIVRRIWRSGA R back to topmRNA from alignment at L-elsbetiae_contig5077:6971..13165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5077.13108.1 ID=mRNA_L-elsbetiae_contig5077.13108.1|Name=mRNA_L-elsbetiae_contig5077.13108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6195bp|location=Sequence derived from alignment at L-elsbetiae_contig5077:6971..13165+ (Laminarionema elsbetiae ELsaHSoW15) GGCTGTTGAAGGAGCTCCATACACTCCACCACGCCTTTTCCTTTGGGCTC
GTTGTCCCTCCTCTAGATCACTGCTCTCAGGAAGGTTTGAGGGAGACCGC
GGCTGAAGCTGAAGGATATGCTGGAACAAAATATGCTTGGAGAAAGGTAG
ATACACACCACGGGTCCCATGGGCGCAGGTTTTGGCGGCGGTACCCAGAA
ACACACGAGGCTAGCTTTCAGCATCTAACTGTGAAGACCCTCTGACATTG
GTAGCTTCATGCTCGGTTGGTGTAGAGATGTCGCAGGTGTGTAGATATCA
AGCCAAAGTTGGTCTATCTGCTTGGCAGCGGCGGCATCGCACACCCTCTT
CTCTGAACAGCGTTTGCCGAGCTTTCTCCGCCACCGTCCCAGGCAACGCC
CGTTCTGTGTGTTAGATTGGACATGGTGCCTTTGCTTCTTCGAATGGGCG
TTGATGCAGGCGGTCTGGCGTGGCGCCATGTTTCAGCCGCGGCAAAAGTG
TCTGGTTTTTGTTGCGAGTGTTTGGGGTCGTTTTCTCCTGCGTCTCTCGG
CCCCAACTTCACCTGGAAGCACCTCCGCCTCCGACGCGCCAGGAGAGAGA
AAAGCTAGCCTAGCCTAGCCTGGATTTCAACATGCGTACCCCCGTAGTGC
CCCTGATGTCGTGTAGGTTACGGTCGTTCATCTCTCTTTGGCTCTTGCTT
GTCACGCCCGCTGTTCCATCAGTATGCATATTTCAGACACATGTTCCTGC
AAATGGCACCGAGTCCAAGCAGTACTTGAAAAGCTTGAAAGCGGGTGGTT
GACCCGAGGTTGTATCTAGACAGACTACATATCTATGGACTAAAATAGAG
ATCATGATAACAGAAGTATCCGAATCGTCGCCCCACTTTATGGACGTCCT
CACTTGTCCGGCGGCCGTTTCCTCTGCTTGTCTATTTTGTGTGTGCTATT
GTGTCCTCACTGAATACACACATCCTGCTGCTGTGTTTTATTGGTGTCAT
CAGCCTGGGGGAGGGGCACATGCACTCATCTTTGGAGGCAGCAGCAGTAC
CAGCAGGAACGGGGCCCTCGAGCAACAACGGCGCAGCCGCTGCCCCAGAT
GGCGCAAGCGGCCCGGCATATGAGTCCCTGTACAACGAGCCGGAGGACCC
GACAGGGACGCGCCAGACACTCATACAGGTGTGTGTGTGTGTGTCTTGTG
TTTGTGTGTGTGTGTGTGTGTTCTGTGCCTCGTGTTCCCGTGTCTTGTGT
GTGCGTGAGCACTGCGCCGCGCTAGCCGGCGCTAACCGGAGGACCTTTTG
AAATACCCGCTGGTCCCAACGGTTCGGTCGACGACCAAAGTTATGCCGCG
AAGGGCCTTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTGTAATCATGCG
TTGGTTGCGTTCGTGGTTCCATAAATACTTCATATTGCCAGGCTTAGATC
TACGTAACATGCACCTACATTATTTATGCAGCTTCGAGCCAACGCATGAA
AGGCTGATTTGCAGGCCAAAGAGGAGGTACGGTTCCTTGTCCTGCTGTGT
CCAAGCCCTGGCAGCTGGTGCCAAAACGCCGCATGAATACCTGTCGCCCG
TGCACACCCCCGGCGCCCGTCCACTCGCCAGAATCGGTACTGCTTCTGGT
ACTACCGCAAGGGCGCGCAGAAGGAGAGCAAGGACCCTAGCGAGGCGTAC
GAGAGCGGCATCAAGGTCGTGGACAGCTTCCAGACGGTGGAGCACTTCTG
GCGCATCTACAACCACATGCTGCGCGCAGATCAGGTATTGTTCCAAGAAC
AGCAGTTGCTGCATCCTGTTTGGGGATCACGTATGTGCACATATGTGAGT
ACGTTACCTGACATGGTGCTTCTGCTGCGGAAACTACTGGTGCTGCTGTG
TGCTCTTTCGGACACAAAGGTAGCAGGCTAGACTGGCTTCTGCCCGTCCC
AAATTGGCTGCATATCTACTTTGGTCCTTGATGCATGATGTCGACACGGA
GAACAGAGCAGAGAGCGTCAACCCGCTCTTGATGTATATAATCTACAGCA
GTGTTAAATATTACCTTGAAATGAAATCGAAATACATTCAAAACACGAGC
GGTGCAGCAACGGCAGGCTGCGAAGCATTAGTCTGTGATGTGCTGGCAGA
GCAGCCGGTACACACGATGCATCGCACCCCCGAAACGCGAACCCACTTGG
CACGCATGCATGCACCTCCACCCCGAGAAGAATACCGCACCATAAAAGCT
TGGAGGTGTTCAAAACAGTACGTAAGACGCCGCATCTGATCGAAAACCAG
TGTGCCTGTTGCGGCTTCGCTTTCGACTCTTGCCACGAGTAGGCTGGCTA
CCCATACATAAGCCCACCCTGTTCCGTGCGGCGTGCTCTCGCCCCGAACG
CTATCTAGCTGATGTTATATGTGTCTCGTGTGTATTTATGTTGTGTCTCG
TGACCGCTCGCCCGGCTTTCCGCCCCGCCCCGTCTCTTGCTCCCTTGCAA
CCCCCAGGTACCGAACGCCACCGATGTGCACCTCTTCAGGGACGGCATCA
AGCCCACCTGGGAAGACTCTTCCAACTCGGTGAGGGGAATATCACAGCAA
AAGCAGTGTTACATTTAGGCGCAGTAGCTTTTGCCACCCAGTGACGGCTG
TGCGATAAGTGGAGGTCCCGCCCGCTTTTAGGGCCAGCTCTGCTATGCAG
GAGGAGTGTGTGCGTGTGCTGCGGTGGGTGTGCGTGCGTGAGTGCGCACG
AGATCCCGCCAAGCACCTGTTTTTCGTTGTTGGCGGGGAGGTGCCGAACA
GCTGGCAGCGGGTGGTTGGGATCTTGTACCTAGGCAAATCAGATTTGGAG
ACACGCCCCCCCCCAGCAGGCACGCCGACGGATGTAGAAACCTGCATACT
TGTACACGATTTTCTCTAGACTCCGTTCGAAAGCAGCAGCAGCAGCGGCG
GCGGCGGCGGCAGGGTTGTGCGTAATTCTTCTCTGCGGTTCACAATTTTT
CCGATATCCATCGTGTGTTCTCATATCCTGTAGTAGGTGTGGTACATACT
CTGTATTAAAAAAGGTAAGAGGTGGGGTGGGTGTGATAATTATCAGTAAT
TTGGTTTCAGAAGGGGGGCGACATTGGGCATTCCCAGGAGGCGTTTCTCT
CCATCGAAAGGGCGACAGCGCTCGCGTCTGTTTTGTTGGCGGCGTGATAA
GGATATGGGTGTTGTTTTGTTGTGTACATACGTATGTTGATCTTCCCGGA
TGTGATGTTTACCCTTTTTTTCAGAGAGGCGTGTTGGCGGCGTGATATGG
ATGTTGTGTTGTTGTACATACATATGCTGATCTTCCCGGATGCGGTGTTT
ACCCCTTTTTTCAGAGAGGCGGCCAGCTGCTAATCCGCCTTAAGAAGGGA
CTTGCGAGCCGCGCGTGGGAGAGCCTGGTGCTGGCCATCGTGGGAGAGCA
GTTCGACGTCGGAAACGAGATTTGCGGCGCCGTTGTGTCGGTCCGGTACA
GGTAATATGACGTCACGTACACGTACATACACGGAACACGAACACCCGTG
TAGCCTGTGTATCCAGCCGTAACTTGTATGGTATGTACCGGTAGATGAAC
TCCTGCCCCCGTCGTGCTTCTGAATCTTACTTGACATTCAATTGATTAGA
AGCGAGTTGCGTTTCAGCCACAATTTTTTCTATTTGTGCTCATTCGGTGC
TTGTTTACCAACTGTGTGCCCCGGTAAGGTCACATGTTGCTGTTGTTTCT
CACATTAGCTATCTAGTCCAAAACATCCTTGGGGGCCCGCGGTCACCAAA
AAAAGGCACACTCGACACCGCGGAAGGAAAAATATCTTCTGCTGGATAGC
GTAGACAATGCCGACACCCAAAAGCTTGCGAGGGTGCGCCCGCCCCGCGC
CGTATGTATCGTGCGATCGACAAATACGTATGTACGAGTGGCAACTCGCG
TTTGCCCACAGCTTTTATGTAAGAGTCGGCGCGCCGCGGATTTAGCGGCC
TGGACTTGCTAATTGAGCAATTACGGAGTACAAAACGTGCAAACCCCCGG
CGGCACAGAATGCCGGCTCTTCTGCCGGCGCTGCTGCACGCATGCCCCAG
CTCACAGGCCGTTCACACGCGCAGTCACGCTCACTGCACGTCTCCCCAAC
GTCCCTCGTGTTAAATGTTGCGTGTCGGCTATGTTCATGTGTCGTATGGT
ATACTACTTGCTGTAGGGGTGAAACGAAGCGCGCGGCAGGTCGTGTTGTC
TGACCGCCGCCGTCTTGGGTGTCCACAGCAGTAGTGGTACTGCTGTTGTC
TCTTTTTCGTGTACCTTGCCCCTGGCGTGTCTAGCGGCCACGGTCGTTTA
ATTTTCTCTTTTTTTTCTGGTTCTTGTTATTGGCACATGGCATGGTGCTG
GTTCTTGCGTATCGCCGCCGCCGCCGCCGCCGCTGTCGGCTGACGCTGTT
TCGTTGCGCGACGCGCATGTCCCGTGATGTTACCTCCGATAGCGAGGACG
TGATCTCGGTCTGGAATCGATCGGCGTCGAACACCGAGGGCATCGACAAG
ATCCGCGAGTCCGTGAAGCGTCTCCTCAAAATACCGTCCTTCGTGCAGGT
GGGTTGTGTTGTCGCGACCCCGCGCGGTGTCCCCGCCTGTTTTGGAACCA
AGCTGTTGATTCGAATGACTAAATTCTACTTTATTCACTACCTACAACGC
CACGAGCACTTCGCGTAGAAGAAATACATTACACGTGTGTGTCAACAAAA
CAGCGACTAGAAGCTTGGTTTGCTGCGAAGCGTCGTCCGGGCGTACAAGT
GCAGCTGCTTTACTGCACCGCCGTGACAGCGTGAGGGTTATCGTCAGCCC
GGCTCTGCCCCCCCCCCGAACTCCCCCCACTGGCCCCCAACATACGCTAC
TTTCCGCCCGCCCGCCCGCACTCCCGCCGGCTATCGCGACGACCGCGGCC
ACGAAAAAATGCAGCTGGAGTACAGGCGCCACCAAGACAACCTAGGGGCG
GCCAGCGTCAGAGAAGAAAGGGGGGGGGGGGGGTTCCGGCTGCATCCCCG
GGGTTCGGGCCTCGGGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCCCTCC
CGGGGGCGGCGGCGGCGCTTGGTTGCGCAACCGGGCCGGTGGTGCGCGGG
GTGGCGATGATCATCACCACAAGGTGGGGCGGAAATCATGGAATTTATTT
CTTATTTAGGTACGACCGTTATCACGAATGCTTGGGGCTTTAGGCCTCCA
AGAGTTGTCTGGCGTACACATGGATGTGTGTTATGTACAGAGTAGCGATG
GATTTTTTTAGGCCAGCACGCGAGTCGTGGATGAGGTAAAAGTAGCGTAC
ATACATCGATACATAGCCCTGTTGTTGTTACCCCGACTCCGTTTCACCTA
TCGTACACGCCGCTGCACCCTTTTTCACGCGTTCAGCCACACGAGGACTC
TGTGGTGGCGATATTTTTGCTGCCGCAACACAACACACGTCAGCAGCATA
CAGCAGTATATAATACGTTCACGACCGTGCTCACGTCGACCCCCCCCCCC
CCCCCCCCCCCCCCCCCCACAACCTTATACCGTTGCCGCCGCTCCCACCG
CCCCCCCCCCCGGCTAAAAAAAAAACAATCCCTTAACAGCGACATACACC
AGTTTTTAATACGTTCTCGCCCCGCCCCCCGTCCCCCCCCCCCCCCCCCC
CCGCCCCACAGCAGTATCTAGTACGTTTACGACCGTGCTCACGTCACCCC
CCGCTGCGAGTAACAAGTAATACCGTTTACCATTTGAAGTCTCTCTCGAC
AGTTCTGCCGTCCTCAATGGAGAAGTAATATGTATGTCGTGCACGTGATG
TCGCGTGTGTCGTGCGTGCACAGGACAGCGACCGTGGGGGGGGCGCGGCT
GGGGGGGGAGGCATGCCACAGGAAACCTGGGCCCGGGGGCCACCCGAGGC
GAGGGACCGAGACCGTGACGGAGGGGGGTTCCGCGGAGGAGCGGGCGGAG
GCGGGGGGTTCAGACCCCCTCCAGGGAGATGGGCTGAGCGGCGGGCGGCG
GCGGAAGAGAGAGGAGGAGGAGGAGGGGGAGGGGGAGGCAAGGACTACGG
AGGGGGCGGGGGAGAGAGGGGAGATGGGGGGGGCAAGGGCTTTGCGCGGG
GAGACCGCGGTGATCGTGAGAAGGATCTGGAGAAGTGGGGCAAGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5077:6971..13165+ >mRNA_L-elsbetiae_contig5077.13108.1 ID=mRNA_L-elsbetiae_contig5077.13108.1|Name=mRNA_L-elsbetiae_contig5077.13108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2406bp|location=Sequence derived from alignment at L-elsbetiae_contig5077:6971..13165+ (Laminarionema elsbetiae ELsaHSoW15) ATGCTGGAACAAAATATGCTTGGAGAAAGATGCTGGAACAAAATATGCTT GGAGAAAGCCTGGGGGAGGGGCACATGCACTCATCTTTGGAGGCAGCAGC AGTACCAGCAGGAACGGGGCCCTCGAGCAACAACGGCGCAGCCGCTGCCC CAGATGGCGCAAGCGGCCCGGCATATGAGTCCCTGTACAACGAGCCGGAG GACCCGACAGGGACGCGCCAGACACTCATACAGCCTGGGGGAGGGGCACA TGCACTCATCTTTGGAGGCAGCAGCAGTACCAGCAGGAACGGGGCCCTCG AGCAACAACGGCGCAGCCGCTGCCCCAGATGGCGCAAGCGGCCCGGCATA TGAGTCCCTGTACAACGAGCCGGAGGACCCGACAGGGACGCGCCAGACAC TCATACAGAATCGGTACTGCTTCTGGTACTACCGCAAGGGCGCGCAGAAG GAGAGCAAGGACCCTAGCGAGGCGTACGAGAGCGGCATCAAGGTCGTGGA CAGCTTCCAGACGGTGGAGCACTTCTGGCGCATCTACAACCACATGCTGC GCGCAGATCAGAATCGGTACTGCTTCTGGTACTACCGCAAGGGCGCGCAG AAGGAGAGCAAGGACCCTAGCGAGGCGTACGAGAGCGGCATCAAGGTCGT GGACAGCTTCCAGACGGTGGAGCACTTCTGGCGCATCTACAACCACATGC TGCGCGCAGATCAGGTACCGAACGCCACCGATGTGCACCTCTTCAGGGAC GGCATCAAGCCCACCTGGGAAGACTCTTCCAACTCGGTACCGAACGCCAC CGATGTGCACCTCTTCAGGGACGGCATCAAGCCCACCTGGGAAGACTCTT CCAACTCGAGAGGCGGCCAGCTGCTAATCCGCCTTAAGAAGGGACTTGCG AGCCGCGCGTGGGAGAGCCTGGTGCTGGCCATCGTGGGAGAGCAGTTCGA CGTCGGAAACGAGATTTGCGGCGCCGTTGTGTCGGTCCGGTACAGAGAGG CGGCCAGCTGCTAATCCGCCTTAAGAAGGGACTTGCGAGCCGCGCGTGGG AGAGCCTGGTGCTGGCCATCGTGGGAGAGCAGTTCGACGTCGGAAACGAG ATTTGCGGCGCCGTTGTGTCGGTCCGGTACAGCGAGGACGTGATCTCGGT CTGGAATCGATCGGCGTCGAACACCGAGGGCATCGACAAGATCCGCGAGT CCGTGAAGCGTCTCCTCAAAATACCGTCCTTCGTGCAGCGAGGACGTGAT CTCGGTCTGGAATCGATCGGCGTCGAACACCGAGGGCATCGACAAGATCC GCGAGTCCGTGAAGCGTCTCCTCAAAATACCGTCCTTCGTGCAGCTGGAG TACAGGCGCCACCAAGACAACCTAGGGGCGGCCAGCGTCAGAGAAGAAAG GGGGGGGGGGGGGTTCCGGCTGCATCCCCGGGGTTCGGGCCTCGGGGTGG TGGTGGTGGTGGTGGTGGCGGTGGCCCTCCCGGGGGCGGCGGCGGCGCTT GGTTGCGCAACCGGGCCGGTGGTGCGCGGGGTGGCGATGATCATCACCAC AAGCTGGAGTACAGGCGCCACCAAGACAACCTAGGGGCGGCCAGCGTCAG AGAAGAAAGGGGGGGGGGGGGGTTCCGGCTGCATCCCCGGGGTTCGGGCC TCGGGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCCCTCCCGGGGGCGGCG GCGGCGCTTGGTTGCGCAACCGGGCCGGTGGTGCGCGGGGTGGCGATGAT CATCACCACAAGGACAGCGACCGTGGGGGGGGCGCGGCTGGGGGGGGAGG CATGCCACAGGAAACCTGGGCCCGGGGGCCACCCGAGGCGAGGGACCGAG ACCGTGACGGAGGGGGGTTCCGCGGAGGAGCGGGCGGAGGCGGGGGGTTC AGACCCCCTCCAGGGAGATGGGCTGAGCGGCGGGCGGCGGCGGAAGAGAG AGGAGGAGGAGGAGGGGGAGGGGGAGGCAAGGACTACGGAGGGGGCGGGG GAGAGAGGGGAGATGGGGGGGGCAAGGGCTTTGCGCGGGGAGACCGCGGT GATCGTGAGAAGGATCTGGAGAAGTGGGGCAAGGGACAGCGACCGTGGGG GGGGCGCGGCTGGGGGGGGAGGCATGCCACAGGAAACCTGGGCCCGGGGG CCACCCGAGGCGAGGGACCGAGACCGTGACGGAGGGGGGTTCCGCGGAGG AGCGGGCGGAGGCGGGGGGTTCAGACCCCCTCCAGGGAGATGGGCTGAGC GGCGGGCGGCGGCGGAAGAGAGAGGAGGAGGAGGAGGGGGAGGGGGAGGC AAGGACTACGGAGGGGGCGGGGGAGAGAGGGGAGATGGGGGGGGCAAGGG CTTTGCGCGGGGAGACCGCGGTGATCGTGAGAAGGATCTGGAGAAGTGGG GCAAGG back to top
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