mRNA_L-elsbetiae_contig5027.13043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5027.13043.1
Unique NamemRNA_L-elsbetiae_contig5027.13043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5027.13043.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.270e-10
Identity = 56/148 (37.84%), Postives = 68/148 (45.95%), Query Frame = 1 
Query:    1 IPGIPSGDGTVCCDSACGQCGGSGCFHFSGGPG-NCCIGGSKGILENADLCSSTGTAPCRIDGDGPPSIPAPSPEESGPSAETCPGDIPGIASGDGTACCDSAC-GKCGGFMCQALPG--GPGKCCIGGLKGILENADPCSSTGAAPC 432
            I GI      +CCD+ACG CGG GC + +G  G +CC   S+ I    DLCS T  APC +D   PP             A TCP  + G+   DG+ CC   C G CGG  C ++ G  G   CC      IL     C     APC
Sbjct:  181 IVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCC---SEEIAVVNDLCSVTNEAPCVMD---PPDF----------VASTCPNGLAGVQ--DGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCS---NTILATGVDCEEGVMAPC 307
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BLAST of mRNA_L-elsbetiae_contig5027.13043.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.230e-6
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   22 DGTVCCDSACGQCGGSGCFHFSGGPG-NCCIGGSKGILENADLCSSTGTAPCRID-GDG 192
            +G VCC + CGQCGG GC    G    NCCI    G+L N +LCS  G APC ID GDG
Sbjct:   57 NGVVCCTAECGQCGGEGCGSVPGLDNTNCCI---NGVLNNQELCSVAGAAPCVIDSGDG 112
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BLAST of mRNA_L-elsbetiae_contig5027.13043.1 vs. uniprot
Match: A0A6H5J9S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.370e-5
Identity = 29/54 (53.70%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   25 GTVCCDSACGQCGGSGCFHFSGGPG-NCCIGGSKGILENADLCSSTGTAPCRID 183
            G VCC + CGQCGG GC    G    NCCI    G+L+N +LCS  G APC ID
Sbjct:   11 GAVCCTAECGQCGGEGCGSVPGLDNTNCCI---NGVLDNQELCSVVGAAPCVID 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5027.13043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7R2_9PHAE3.270e-1037.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSQ5_ECTSI6.230e-654.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9S1_9PHAE1.370e-553.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5027contigL-elsbetiae_contig5027:9276..11257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Exons4
Model size1026
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5027.13043.1prot_L-elsbetiae_contig5027.13043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5027 9855..11257 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816507.4923162-UTR-L-elsbetiae_contig5027:9275..98541622816507.4923162-UTR-L-elsbetiae_contig5027:9275..9854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5027 9276..9854 -
1691683609.8255951-UTR-L-elsbetiae_contig5027:9275..98541691683609.8255951-UTR-L-elsbetiae_contig5027:9275..9854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5027 9276..9854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816507.5102503-CDS-L-elsbetiae_contig5027:9854..98591622816507.5102503-CDS-L-elsbetiae_contig5027:9854..9859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 9855..9859 -
1691683609.8382058-CDS-L-elsbetiae_contig5027:9854..98591691683609.8382058-CDS-L-elsbetiae_contig5027:9854..9859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 9855..9859 -
1622816507.5233076-CDS-L-elsbetiae_contig5027:10209..104221622816507.5233076-CDS-L-elsbetiae_contig5027:10209..10422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 10210..10422 -
1691683609.8486845-CDS-L-elsbetiae_contig5027:10209..104221691683609.8486845-CDS-L-elsbetiae_contig5027:10209..10422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 10210..10422 -
1622816507.5379114-CDS-L-elsbetiae_contig5027:10722..107671622816507.5379114-CDS-L-elsbetiae_contig5027:10722..10767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 10723..10767 -
1691683609.861512-CDS-L-elsbetiae_contig5027:10722..107671691683609.861512-CDS-L-elsbetiae_contig5027:10722..10767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 10723..10767 -
1622816507.5507412-CDS-L-elsbetiae_contig5027:11073..112571622816507.5507412-CDS-L-elsbetiae_contig5027:11073..11257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 11074..11257 -
1691683609.8765104-CDS-L-elsbetiae_contig5027:11073..112571691683609.8765104-CDS-L-elsbetiae_contig5027:11073..11257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5027 11074..11257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5027.13043.1

>prot_L-elsbetiae_contig5027.13043.1 ID=prot_L-elsbetiae_contig5027.13043.1|Name=mRNA_L-elsbetiae_contig5027.13043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
IPGIPSGDGTVCCDSACGQCGGSGCFHFSGGPGNCCIGGSKGILENADLC
SSTGTAPCRIDGDGPPSIPAPSPEESGPSAETCPGDIPGIASGDGTACCD
SACGKCGGFMCQALPGGPGKCCIGGLKGILENADPCSSTGAAPCRIDA*
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mRNA from alignment at L-elsbetiae_contig5027:9276..11257-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5027.13043.1 ID=mRNA_L-elsbetiae_contig5027.13043.1|Name=mRNA_L-elsbetiae_contig5027.13043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1982bp|location=Sequence derived from alignment at L-elsbetiae_contig5027:9276..11257- (Laminarionema elsbetiae ELsaHSoW15)
ATTCCCGGCATCCCGTCCGGGGACGGCACCGTGTGCTGCGACAGTGCTTG
CGGGCAGTGCGGAGGAAGCGGCTGCTTCCATTTCTCTGGGGGGCCGGGCA
ACTGCTGCATCGGTGGATCGAAAGGCATCCTTGAAAATGCGGACCTTTGC
TCCTCGACCGGAACTGCTCCGTGCAGAATCGATGGTAAGGGATCCGTGGG
AAGGCTACCTTGTCTACTGGGCGGCTGTGCGATTGTTGCTTTTTGCTGTT
GTGAAGCATCCGTGCACCGGTGTAATTGGGGCACAAGATGCCTTTCTTCT
CGCACGACGGTGTGGAATGTCGGGTGCAAAAATGAATCTGCTCTTGAGGT
CCGTTTTACGGGAGTCGATATTTCGATATTCGGCTGCCATATCTGGGTTT
TCGCCTACTGACCCATCTACTAGACATATCCCAACTACTGCATTACCTGT
CGTTGCTCCTGTGGACAATTTCCACGCCGCCCCCCGTCAGGTGATGGCCC
TCCATCAATCCCTGCCCCCTCCCCGGAAGAATCAGGTGGGTTCTTTGTTG
GGGTAGACAAGCTTATCGATATTATTTCCAAGATGGTTTGAGTTCAGCGT
GAAATTCGCGTTGGTAGCCGCAGAACTTGCCAGGGGATTTCGAGAGTCCG
CGCTTTGGCTGCGCAATCAGCCCTTGCGTACCAACAAACGTAATGTTGAT
ATGTCGCTGGCTCTGCGCTCGACCGGCGTCGTAGAACTCTGGTTTTGATG
ACTCCTCGTGCTTTTTTGCATCGCAGTAGTTGGCACCAACTGCAGAATGG
TAGTCTAAAAGGGCTATCGTCTGTTGCCTCTCCAGGCCCTTCAGCCGAGA
CGTGCCCGGGCGACATTCCCGGCATCGCGTCCGGGGACGGCACCGCATGC
TGCGATAGTGCTTGCGGGAAGTGTGGAGGGTTCATGTGCCAGGCATTGCC
CGGGGGACCGGGAAAATGCTGCATCGGCGGATTGAAGGGCATCCTTGAAA
ACGCGGACCCTTGCTCCTCGACTGGGGCTGCTCCGTGCAGAATTGATGGT
AAGGAATGCGTGGCCAGGCAATACAGCGTAGGGTAATTCTTTTTGTGGGT
GGTCCCGGACGCGTGTATTTGTTAGCCACTTATTATTTCCCGTACTTTCG
CCGTGCACTCCGGTGTGACGCGGCAACACAAAGCAGCCCAAAAATGGACG
CCAAAATCGAAAAAGTAAAAGTACAAGCCGGATGCTGGCCGGTTCTACGT
TCTCCATGTATCTATTCGCACGACGGATGGGTATCTTTTCTGCATGTGAA
GGCTTGTCTGGCTCAACGAACGACATACGTCTTTGCTTTTTCCGTACCTC
TCGTATTCGCCGTTGAACCGGATCTATCTACGCCGGTGGATCTGACAGCG
TGAATCATCGGTAAGAGATAAAAAAAGCTCGGTGGGGTACGCCAGGCGGA
AGGTGGAAGGTGCCGAGACTGGACAACACGAAGAACTTGACCCTGCTCGC
CGGCTGTCCTGAGCCCGAGTTATTCTTCTGTGGTGCTATGTACTACCAGG
GTTATACAACGCCCCCCCCCGCCTTGACGGGGCGGCGGGGCCATACGGGG
TTTGATGTGAAGAAATGTAGCGGCATTCGGAAAGGTGCTGGAGGTAGGTA
TGTGTCGTCGGACGGAGCGCTGACTAACGGAGAGAGGCTGAAAAAACCAC
GACTGTTACGTTCGAAAGAGAAGGAGTGGAAAGAGAACGGCTTGAAAAGA
GTAGAGGACGAACGGGAAATAGCAGATCGGGGTCATGTGCGTCAAATATT
GAAGACGTAACAGAGTCGCCGCAGGGGCCTCTATGACTGCAAGTTGACTC
GTTTTAAACTCAGAGTGATCTAAGGGCGAACGGGTCCACGCGACCAAATA
TGGAGGGACATGAGTCATGAAACAAACATGTCATGGTGTATTATTTTTGA
GAAGAAATATCGAGGAGTTTGGGGGCTGCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5027:9276..11257-

>mRNA_L-elsbetiae_contig5027.13043.1 ID=mRNA_L-elsbetiae_contig5027.13043.1|Name=mRNA_L-elsbetiae_contig5027.13043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig5027:9276..11257- (Laminarionema elsbetiae ELsaHSoW15)
ATTCCCGGCATCCCGTCCGGGGACGGCACCGTGTGCTGCGACAGTGCTTG
CGGGCAGTGCGGAGGAAGCGGCTGCTTCCATTTCTCTGGGGGGCCGGGCA
ACTGCTGCATCGGTGGATCGAAAGGCATCCTTGAAAATGCGGACCTTTGC
TCCTCGACCGGAACTGCTCCGTGCAGAATCGATGATTCCCGGCATCCCGT
CCGGGGACGGCACCGTGTGCTGCGACAGTGCTTGCGGGCAGTGCGGAGGA
AGCGGCTGCTTCCATTTCTCTGGGGGGCCGGGCAACTGCTGCATCGGTGG
ATCGAAAGGCATCCTTGAAAATGCGGACCTTTGCTCCTCGACCGGAACTG
CTCCGTGCAGAATCGATGGTGATGGCCCTCCATCAATCCCTGCCCCCTCC
CCGGAAGAATCAGGTGATGGCCCTCCATCAATCCCTGCCCCCTCCCCGGA
AGAATCAGGCCCTTCAGCCGAGACGTGCCCGGGCGACATTCCCGGCATCG
CGTCCGGGGACGGCACCGCATGCTGCGATAGTGCTTGCGGGAAGTGTGGA
GGGTTCATGTGCCAGGCATTGCCCGGGGGACCGGGAAAATGCTGCATCGG
CGGATTGAAGGGCATCCTTGAAAACGCGGACCCTTGCTCCTCGACTGGGG
CTGCTCCGTGCAGAATTGATGGCCCTTCAGCCGAGACGTGCCCGGGCGAC
ATTCCCGGCATCGCGTCCGGGGACGGCACCGCATGCTGCGATAGTGCTTG
CGGGAAGTGTGGAGGGTTCATGTGCCAGGCATTGCCCGGGGGACCGGGAA
AATGCTGCATCGGCGGATTGAAGGGCATCCTTGAAAACGCGGACCCTTGC
TCCTCGACTGGGGCTGCTCCGTGCAGAATTGATGCGTGACGTGA
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