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Homology
BLAST of mRNA_L-elsbetiae_contig5027.13043.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 3.270e-10 Identity = 56/148 (37.84%), Postives = 68/148 (45.95%), Query Frame = 1
Query: 1 IPGIPSGDGTVCCDSACGQCGGSGCFHFSGGPG-NCCIGGSKGILENADLCSSTGTAPCRIDGDGPPSIPAPSPEESGPSAETCPGDIPGIASGDGTACCDSAC-GKCGGFMCQALPG--GPGKCCIGGLKGILENADPCSSTGAAPC 432
I GI +CCD+ACG CGG GC + +G G +CC S+ I DLCS T APC +D PP A TCP + G+ DG+ CC C G CGG C ++ G G CC IL C APC
Sbjct: 181 IVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCC---SEEIAVVNDLCSVTNEAPCVMD---PPDF----------VASTCPNGLAGVQ--DGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCS---NTILATGVDCEEGVMAPC 307
BLAST of mRNA_L-elsbetiae_contig5027.13043.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 6.230e-6 Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 22 DGTVCCDSACGQCGGSGCFHFSGGPG-NCCIGGSKGILENADLCSSTGTAPCRID-GDG 192
+G VCC + CGQCGG GC G NCCI G+L N +LCS G APC ID GDG
Sbjct: 57 NGVVCCTAECGQCGGEGCGSVPGLDNTNCCI---NGVLNNQELCSVAGAAPCVIDSGDG 112
BLAST of mRNA_L-elsbetiae_contig5027.13043.1 vs. uniprot
Match: A0A6H5J9S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S1_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.370e-5 Identity = 29/54 (53.70%), Postives = 33/54 (61.11%), Query Frame = 1
Query: 25 GTVCCDSACGQCGGSGCFHFSGGPG-NCCIGGSKGILENADLCSSTGTAPCRID 183
G VCC + CGQCGG GC G NCCI G+L+N +LCS G APC ID
Sbjct: 11 GAVCCTAECGQCGGEGCGSVPGLDNTNCCI---NGVLDNQELCSVVGAAPCVID 61
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 89.0 |
| Seed ortholog evalue | 2.1e-15 |
| Seed eggNOG ortholog | 2880.D7FJ68 |
| Preferred name | MTPAP |
| KEGG ko | ko:K08342,ko:K16462,ko:K17478,ko:K18060 |
| KEGG Pathway | ko04136,ko04138,ko04140,map04136,map04138,map04140 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | importin-alpha family protein binding |
| EggNOG OGs | COG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759 |
| EC | 2.7.7.19 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812 |
| Exons | 4 |
| Model size | 1026 |
| Cds size | 447 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816507.4923162-UTR-L-elsbetiae_contig5027:9275..9854 | 1622816507.4923162-UTR-L-elsbetiae_contig5027:9275..9854 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5027 9276..9854 - |
| 1691683609.8255951-UTR-L-elsbetiae_contig5027:9275..9854 | 1691683609.8255951-UTR-L-elsbetiae_contig5027:9275..9854 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5027 9276..9854 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816507.5102503-CDS-L-elsbetiae_contig5027:9854..9859 | 1622816507.5102503-CDS-L-elsbetiae_contig5027:9854..9859 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 9855..9859 - |
| 1691683609.8382058-CDS-L-elsbetiae_contig5027:9854..9859 | 1691683609.8382058-CDS-L-elsbetiae_contig5027:9854..9859 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 9855..9859 - |
| 1622816507.5233076-CDS-L-elsbetiae_contig5027:10209..10422 | 1622816507.5233076-CDS-L-elsbetiae_contig5027:10209..10422 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 10210..10422 - |
| 1691683609.8486845-CDS-L-elsbetiae_contig5027:10209..10422 | 1691683609.8486845-CDS-L-elsbetiae_contig5027:10209..10422 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 10210..10422 - |
| 1622816507.5379114-CDS-L-elsbetiae_contig5027:10722..10767 | 1622816507.5379114-CDS-L-elsbetiae_contig5027:10722..10767 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 10723..10767 - |
| 1691683609.861512-CDS-L-elsbetiae_contig5027:10722..10767 | 1691683609.861512-CDS-L-elsbetiae_contig5027:10722..10767 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 10723..10767 - |
| 1622816507.5507412-CDS-L-elsbetiae_contig5027:11073..11257 | 1622816507.5507412-CDS-L-elsbetiae_contig5027:11073..11257 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 11074..11257 - |
| 1691683609.8765104-CDS-L-elsbetiae_contig5027:11073..11257 | 1691683609.8765104-CDS-L-elsbetiae_contig5027:11073..11257 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5027 11074..11257 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5027.13043.1 >prot_L-elsbetiae_contig5027.13043.1 ID=prot_L-elsbetiae_contig5027.13043.1|Name=mRNA_L-elsbetiae_contig5027.13043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
IPGIPSGDGTVCCDSACGQCGGSGCFHFSGGPGNCCIGGSKGILENADLC
SSTGTAPCRIDGDGPPSIPAPSPEESGPSAETCPGDIPGIASGDGTACCD
SACGKCGGFMCQALPGGPGKCCIGGLKGILENADPCSSTGAAPCRIDA* back to topmRNA from alignment at L-elsbetiae_contig5027:9276..11257- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5027.13043.1 ID=mRNA_L-elsbetiae_contig5027.13043.1|Name=mRNA_L-elsbetiae_contig5027.13043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1982bp|location=Sequence derived from alignment at L-elsbetiae_contig5027:9276..11257- (Laminarionema elsbetiae ELsaHSoW15)
ATTCCCGGCATCCCGTCCGGGGACGGCACCGTGTGCTGCGACAGTGCTTG
CGGGCAGTGCGGAGGAAGCGGCTGCTTCCATTTCTCTGGGGGGCCGGGCA
ACTGCTGCATCGGTGGATCGAAAGGCATCCTTGAAAATGCGGACCTTTGC
TCCTCGACCGGAACTGCTCCGTGCAGAATCGATGGTAAGGGATCCGTGGG
AAGGCTACCTTGTCTACTGGGCGGCTGTGCGATTGTTGCTTTTTGCTGTT
GTGAAGCATCCGTGCACCGGTGTAATTGGGGCACAAGATGCCTTTCTTCT
CGCACGACGGTGTGGAATGTCGGGTGCAAAAATGAATCTGCTCTTGAGGT
CCGTTTTACGGGAGTCGATATTTCGATATTCGGCTGCCATATCTGGGTTT
TCGCCTACTGACCCATCTACTAGACATATCCCAACTACTGCATTACCTGT
CGTTGCTCCTGTGGACAATTTCCACGCCGCCCCCCGTCAGGTGATGGCCC
TCCATCAATCCCTGCCCCCTCCCCGGAAGAATCAGGTGGGTTCTTTGTTG
GGGTAGACAAGCTTATCGATATTATTTCCAAGATGGTTTGAGTTCAGCGT
GAAATTCGCGTTGGTAGCCGCAGAACTTGCCAGGGGATTTCGAGAGTCCG
CGCTTTGGCTGCGCAATCAGCCCTTGCGTACCAACAAACGTAATGTTGAT
ATGTCGCTGGCTCTGCGCTCGACCGGCGTCGTAGAACTCTGGTTTTGATG
ACTCCTCGTGCTTTTTTGCATCGCAGTAGTTGGCACCAACTGCAGAATGG
TAGTCTAAAAGGGCTATCGTCTGTTGCCTCTCCAGGCCCTTCAGCCGAGA
CGTGCCCGGGCGACATTCCCGGCATCGCGTCCGGGGACGGCACCGCATGC
TGCGATAGTGCTTGCGGGAAGTGTGGAGGGTTCATGTGCCAGGCATTGCC
CGGGGGACCGGGAAAATGCTGCATCGGCGGATTGAAGGGCATCCTTGAAA
ACGCGGACCCTTGCTCCTCGACTGGGGCTGCTCCGTGCAGAATTGATGGT
AAGGAATGCGTGGCCAGGCAATACAGCGTAGGGTAATTCTTTTTGTGGGT
GGTCCCGGACGCGTGTATTTGTTAGCCACTTATTATTTCCCGTACTTTCG
CCGTGCACTCCGGTGTGACGCGGCAACACAAAGCAGCCCAAAAATGGACG
CCAAAATCGAAAAAGTAAAAGTACAAGCCGGATGCTGGCCGGTTCTACGT
TCTCCATGTATCTATTCGCACGACGGATGGGTATCTTTTCTGCATGTGAA
GGCTTGTCTGGCTCAACGAACGACATACGTCTTTGCTTTTTCCGTACCTC
TCGTATTCGCCGTTGAACCGGATCTATCTACGCCGGTGGATCTGACAGCG
TGAATCATCGGTAAGAGATAAAAAAAGCTCGGTGGGGTACGCCAGGCGGA
AGGTGGAAGGTGCCGAGACTGGACAACACGAAGAACTTGACCCTGCTCGC
CGGCTGTCCTGAGCCCGAGTTATTCTTCTGTGGTGCTATGTACTACCAGG
GTTATACAACGCCCCCCCCCGCCTTGACGGGGCGGCGGGGCCATACGGGG
TTTGATGTGAAGAAATGTAGCGGCATTCGGAAAGGTGCTGGAGGTAGGTA
TGTGTCGTCGGACGGAGCGCTGACTAACGGAGAGAGGCTGAAAAAACCAC
GACTGTTACGTTCGAAAGAGAAGGAGTGGAAAGAGAACGGCTTGAAAAGA
GTAGAGGACGAACGGGAAATAGCAGATCGGGGTCATGTGCGTCAAATATT
GAAGACGTAACAGAGTCGCCGCAGGGGCCTCTATGACTGCAAGTTGACTC
GTTTTAAACTCAGAGTGATCTAAGGGCGAACGGGTCCACGCGACCAAATA
TGGAGGGACATGAGTCATGAAACAAACATGTCATGGTGTATTATTTTTGA
GAAGAAATATCGAGGAGTTTGGGGGCTGCGGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5027:9276..11257- >mRNA_L-elsbetiae_contig5027.13043.1 ID=mRNA_L-elsbetiae_contig5027.13043.1|Name=mRNA_L-elsbetiae_contig5027.13043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig5027:9276..11257- (Laminarionema elsbetiae ELsaHSoW15)
ATTCCCGGCATCCCGTCCGGGGACGGCACCGTGTGCTGCGACAGTGCTTG
CGGGCAGTGCGGAGGAAGCGGCTGCTTCCATTTCTCTGGGGGGCCGGGCA
ACTGCTGCATCGGTGGATCGAAAGGCATCCTTGAAAATGCGGACCTTTGC
TCCTCGACCGGAACTGCTCCGTGCAGAATCGATGATTCCCGGCATCCCGT
CCGGGGACGGCACCGTGTGCTGCGACAGTGCTTGCGGGCAGTGCGGAGGA
AGCGGCTGCTTCCATTTCTCTGGGGGGCCGGGCAACTGCTGCATCGGTGG
ATCGAAAGGCATCCTTGAAAATGCGGACCTTTGCTCCTCGACCGGAACTG
CTCCGTGCAGAATCGATGGTGATGGCCCTCCATCAATCCCTGCCCCCTCC
CCGGAAGAATCAGGTGATGGCCCTCCATCAATCCCTGCCCCCTCCCCGGA
AGAATCAGGCCCTTCAGCCGAGACGTGCCCGGGCGACATTCCCGGCATCG
CGTCCGGGGACGGCACCGCATGCTGCGATAGTGCTTGCGGGAAGTGTGGA
GGGTTCATGTGCCAGGCATTGCCCGGGGGACCGGGAAAATGCTGCATCGG
CGGATTGAAGGGCATCCTTGAAAACGCGGACCCTTGCTCCTCGACTGGGG
CTGCTCCGTGCAGAATTGATGGCCCTTCAGCCGAGACGTGCCCGGGCGAC
ATTCCCGGCATCGCGTCCGGGGACGGCACCGCATGCTGCGATAGTGCTTG
CGGGAAGTGTGGAGGGTTCATGTGCCAGGCATTGCCCGGGGGACCGGGAA
AATGCTGCATCGGCGGATTGAAGGGCATCCTTGAAAACGCGGACCCTTGC
TCCTCGACTGGGGCTGCTCCGTGCAGAATTGATGCGTGACGTGA back to top
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