mRNA_L-elsbetiae_contig4996.12991.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4996.12991.1
Unique NamemRNA_L-elsbetiae_contig4996.12991.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.860e-45
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:    4 QVLVEQAGATFDVYPASITTKYYNAQVNLWRQTQATVPVLALRSADELEGLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDGEEAAG 315
            QVL+EQA A FDV+PASITTKYYNAQ++ WRQ QA VP+LALRSA++LEGLEGIIVLFDLR+ES F EA+QWAA + DRE+CAFRVCVGSKLDL+P+D  + AG
Sbjct:   61 QVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPILALRSAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDGAG 164
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BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.290e-29
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:   82 VNLWRQTQATVPVLALRSADELEGLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDGEEAAGGSRFGEELSAPPEDIKPAE 372
            ++ WRQ QA VPVLALRSA++LEGLEGIIV+FDLR+ESS  E AQWAA V DRE+CAFRVCVGSKLDL+PED  +  G   FG      PE   PAE
Sbjct:    7 ISFWRQAQAAVPVLALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDGTG---FGTGAETAPE---PAE 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L249_9PHAE2.860e-4575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG9_ECTSI2.290e-2965.98IRC6, uncharacterized protein interacting with AP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4996contigL-elsbetiae_contig4996:1420..3739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIRC6, uncharacterised protein interacting with AP adaptor complexes
Ec32 orthologEc-25_002450.1
Exons4
Model size402
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4996.12991.1prot_L-elsbetiae_contig4996.12991.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4996 1420..3739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816500.9695654-CDS-L-elsbetiae_contig4996:1419..15001622816500.9695654-CDS-L-elsbetiae_contig4996:1419..1500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 1420..1500 +
1691683605.0440116-CDS-L-elsbetiae_contig4996:1419..15001691683605.0440116-CDS-L-elsbetiae_contig4996:1419..1500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 1420..1500 +
1622816500.981947-CDS-L-elsbetiae_contig4996:2481..25891622816500.981947-CDS-L-elsbetiae_contig4996:2481..2589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 2482..2589 +
1691683605.0564249-CDS-L-elsbetiae_contig4996:2481..25891691683605.0564249-CDS-L-elsbetiae_contig4996:2481..2589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 2482..2589 +
1622816500.995341-CDS-L-elsbetiae_contig4996:3211..32981622816500.995341-CDS-L-elsbetiae_contig4996:3211..3298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 3212..3298 +
1691683605.0680637-CDS-L-elsbetiae_contig4996:3211..32981691683605.0680637-CDS-L-elsbetiae_contig4996:3211..3298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 3212..3298 +
1622816501.0053577-CDS-L-elsbetiae_contig4996:3613..37391622816501.0053577-CDS-L-elsbetiae_contig4996:3613..3739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 3614..3739 +
1691683605.079713-CDS-L-elsbetiae_contig4996:3613..37391691683605.079713-CDS-L-elsbetiae_contig4996:3613..3739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4996 3614..3739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4996.12991.1

>prot_L-elsbetiae_contig4996.12991.1 ID=prot_L-elsbetiae_contig4996.12991.1|Name=mRNA_L-elsbetiae_contig4996.12991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RQVLVEQAGATFDVYPASITTKYYNAQVNLWRQTQATVPVLALRSADELE
GLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDG
EEAAGGSRFGEELSAPPEDIKPAEPNGGGGGDGG
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mRNA from alignment at L-elsbetiae_contig4996:1420..3739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4996.12991.1 ID=mRNA_L-elsbetiae_contig4996.12991.1|Name=mRNA_L-elsbetiae_contig4996.12991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2320bp|location=Sequence derived from alignment at L-elsbetiae_contig4996:1420..3739+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCAAGTGTTGGTCGAGCAGGCAGGCGCGACGTTCGACGTCTACCCGGC
GTCGATAACTACCAAGTACTACAACGCGCAGGTGAAATGATGCCATTCAG
GCAAGAAGTGCAGCGGCGGAAGAAAGTATGGCCACGGCGCAAGTCCGACC
CTCTCAAAAACTCCCCCAACACTCGCGAAAGCGTGGGCAAAGCCCTTACC
GGCCATGTGATACTTGATACTTGATACGCAGGTCGAACAACTTATGTACA
ACATGTACCATACCTTTTTGCCTTGCAGCAAAGGAAGCGGAGTAACCTGC
ACTGACAACACGGTATTTATCACAACACACATACTTCCTCTGTCTCATAA
GTCTGGGTGCTTATGCGCACTAAATCGTTTGGGTACTCTCATGTTGACGT
TTATGCTTTAGTTGGGTGCGTTAGAAAGACAACACGCAGGGCTAGCCCAT
GAAAAAAAAAAAAACGGAGTTGGTCTTCAACCCTAAAATCATGTCAAAAT
ATACCCCATTTTGGCACTTTGCGATCGATTTAGCCCCAATATTGCCCGGT
TTCGGACGTTTCCGCGTCGAGCAGTAGCGATTACCTGGCTACAAATTGTT
AGGGTAAGCGTGCGTGCGTTAACCTCACGTCTACATCCAAATCAATGGTT
GTTTTGCGATTTTCGGCATTTTTTCACCGTTTAAATTTATGGCAATTTTC
CTGTTGCCGGGTCTCCTATACGTTTTTACTTGGAAAAGGGGGGCAAAACG
GCCTTTTTGGGGCCGACCGACTTTCTTGCAGCAGCCGAAAGCACCCACTA
CTGTATGAAAATAGCAATGTTCTTGGCTCAAAAAACGTCGAGGAAATTCA
ATAAAACAGTCGAAAATCGAATCGGACACCGTTAAGGACTCGTCCAAACA
TAAGTACCTACCCAGACTTATGAGACAGAGGAAGTATGTATATAAGCACC
TTGTGTGCAGTATATGTTATCCCGGAGAGCGCTGTATCGGGTCGCAAGTA
TCTCAGCGGCGGTCCCTATCCTGTCGGCGTGAACACGGTGGTGTGCGCTT
GTTTGAGTGCAGGTGAACCTGTGGCGGCAGACGCAGGCGACGGTACCCGT
TCTGGCGCTGAGATCGGCGGACGAGCTTGAAGGTCTTGAGGGTATAATCG
TCTTGTTCGATCTCAGGAAGGTGTGCGAGATAAAAAAATAGGTTGGCAAC
AGCTACACCGGGTGCTGTGCTGTGTGCTGTGTGCTGTGTTGTGTGTTGCG
CTTCCCTTCGCTTCCCTGCGCGAGTAGGATGTAGTGGTGGAGAGAGCCTG
CTTTGGTACAGTATCCCATTTTTTTCTTCCTTTTCTTCTTCACGTTTATT
TCCAGTGTTCGATGGGCTCCTTGTCACCAGGGCATCTTGCCAGAGTAATG
AACCATGGTTTGGTATCCCATACTGCTGTTAGTCGGGAATAAATAGGCAT
GGCTACTACATGCATACGCTGTTTTTTTTCTCGTGTTGTTTTTTTCCAGC
CTAAATATCGTGAACACGAGCTATTTCAACTTGGAGAGGTACCAAAGCGG
TTGGTGGAGAGTGCTGCAGCGTTGTGGTGAGGTAGTGTATACTCGGTGGG
TCAAGAGTCCCCCCCAGCCTCCCTCCCTCTTGCCTCCCTCGTTGGCACAC
ACAGGGCACCAGTATCCCCCTCGCCCAACACAAGCTTCCGCCCTTGTTTT
GTTTACCCTTTGTTGCGTGTCTGCGTTAACACACACCCCCGCGGTCTTGT
TTCCATTGCGCTCGTGGCTTTCTTTTCCCCCCTCTTTCCCAGGAATCTAG
CTTTGCCGAGGCGGCTCAGTGGGCGGCTTTCGTGAACGATAGGGAGCAGT
GCGCCTTCCGAGTTTGCGTCGGAAGCAAGGTGCGCGCGCCTCTTGTTTGT
GTTCGAGCTCTCACCACCCCAAAGCAATCAACCCGCAGCAGTAGTTTGAG
GTGTGTAAACCGTGCGTGCTTTTTTCTTGAGTTCGTGACTGACCGAAGTG
TTGGTTTCTGCCAACCAATGGCGGCGCACACTGCAAGAAGCCTTGCATAT
CATGTTGGTATATTTAGTTCCGCAGACTTTTCGCAGCGGTCGGCGCACCT
GTCGCCCCGTCGCCGCGTTTCATGCGTTATTGTGTCCTTGGACCCCCGCC
TCTACGCGTGTACTTGCTATGAATGATGGCGTGGCCAACCACAGCTTGAT
TTGGTGCCGGAGGATGGAGAAGAAGCAGCCGGTGGTTCCCGCTTCGGCGA
AGAGCTTTCAGCCCCTCCTGAAGACATAAAACCAGCGGAACCGAACGGCG
GGGGGGGGGGTGACGGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4996:1420..3739+

>mRNA_L-elsbetiae_contig4996.12991.1 ID=mRNA_L-elsbetiae_contig4996.12991.1|Name=mRNA_L-elsbetiae_contig4996.12991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig4996:1420..3739+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCAAGTGTTGGTCGAGCAGGCAGGCGCGACGTTCGACGTCTACCCGGC
GTCGATAACTACCAAGTACTACAACGCGCAGAGGCAAGTGTTGGTCGAGC
AGGCAGGCGCGACGTTCGACGTCTACCCGGCGTCGATAACTACCAAGTAC
TACAACGCGCAGGTGAACCTGTGGCGGCAGACGCAGGCGACGGTACCCGT
TCTGGCGCTGAGATCGGCGGACGAGCTTGAAGGTCTTGAGGGTATAATCG
TCTTGTTCGATCTCAGGAAGGTGAACCTGTGGCGGCAGACGCAGGCGACG
GTACCCGTTCTGGCGCTGAGATCGGCGGACGAGCTTGAAGGTCTTGAGGG
TATAATCGTCTTGTTCGATCTCAGGAAGGAATCTAGCTTTGCCGAGGCGG
CTCAGTGGGCGGCTTTCGTGAACGATAGGGAGCAGTGCGCCTTCCGAGTT
TGCGTCGGAAGCAAGGAATCTAGCTTTGCCGAGGCGGCTCAGTGGGCGGC
TTTCGTGAACGATAGGGAGCAGTGCGCCTTCCGAGTTTGCGTCGGAAGCA
AGCTTGATTTGGTGCCGGAGGATGGAGAAGAAGCAGCCGGTGGTTCCCGC
TTCGGCGAAGAGCTTTCAGCCCCTCCTGAAGACATAAAACCAGCGGAACC
GAACGGCGGGGGGGGGGGTGACGGAGGCCTTGATTTGGTGCCGGAGGATG
GAGAAGAAGCAGCCGGTGGTTCCCGCTTCGGCGAAGAGCTTTCAGCCCCT
CCTGAAGACATAAAACCAGCGGAACCGAACGGCGGGGGGGGGGGTGACGG
AGGC
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