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Homology
BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.860e-45 Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 1
Query: 4 QVLVEQAGATFDVYPASITTKYYNAQVNLWRQTQATVPVLALRSADELEGLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDGEEAAG 315
QVL+EQA A FDV+PASITTKYYNAQ++ WRQ QA VP+LALRSA++LEGLEGIIVLFDLR+ES F EA+QWAA + DRE+CAFRVCVGSKLDL+P+D + AG
Sbjct: 61 QVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPILALRSAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDGAG 164
BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI) HSP 1 Score: 120 bits (301), Expect = 2.290e-29 Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 1
Query: 82 VNLWRQTQATVPVLALRSADELEGLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDGEEAAGGSRFGEELSAPPEDIKPAE 372
++ WRQ QA VPVLALRSA++LEGLEGIIV+FDLR+ESS E AQWAA V DRE+CAFRVCVGSKLDL+PED + G FG PE PAE
Sbjct: 7 ISFWRQAQAAVPVLALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDGTG---FGTGAETAPE---PAE 97
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | IRC6, uncharacterised protein interacting with AP adaptor complexes |
Ec32 ortholog | Ec-25_002450.1 |
Exons | 4 |
Model size | 402 |
Cds size | 402 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816500.9695654-CDS-L-elsbetiae_contig4996:1419..1500 | 1622816500.9695654-CDS-L-elsbetiae_contig4996:1419..1500 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 1420..1500 + |
1691683605.0440116-CDS-L-elsbetiae_contig4996:1419..1500 | 1691683605.0440116-CDS-L-elsbetiae_contig4996:1419..1500 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 1420..1500 + |
1622816500.981947-CDS-L-elsbetiae_contig4996:2481..2589 | 1622816500.981947-CDS-L-elsbetiae_contig4996:2481..2589 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 2482..2589 + |
1691683605.0564249-CDS-L-elsbetiae_contig4996:2481..2589 | 1691683605.0564249-CDS-L-elsbetiae_contig4996:2481..2589 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 2482..2589 + |
1622816500.995341-CDS-L-elsbetiae_contig4996:3211..3298 | 1622816500.995341-CDS-L-elsbetiae_contig4996:3211..3298 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 3212..3298 + |
1691683605.0680637-CDS-L-elsbetiae_contig4996:3211..3298 | 1691683605.0680637-CDS-L-elsbetiae_contig4996:3211..3298 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 3212..3298 + |
1622816501.0053577-CDS-L-elsbetiae_contig4996:3613..3739 | 1622816501.0053577-CDS-L-elsbetiae_contig4996:3613..3739 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 3614..3739 + |
1691683605.079713-CDS-L-elsbetiae_contig4996:3613..3739 | 1691683605.079713-CDS-L-elsbetiae_contig4996:3613..3739 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4996 3614..3739 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4996.12991.1 >prot_L-elsbetiae_contig4996.12991.1 ID=prot_L-elsbetiae_contig4996.12991.1|Name=mRNA_L-elsbetiae_contig4996.12991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RQVLVEQAGATFDVYPASITTKYYNAQVNLWRQTQATVPVLALRSADELE GLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDG EEAAGGSRFGEELSAPPEDIKPAEPNGGGGGDGG back to topmRNA from alignment at L-elsbetiae_contig4996:1420..3739+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig4996.12991.1 ID=mRNA_L-elsbetiae_contig4996.12991.1|Name=mRNA_L-elsbetiae_contig4996.12991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2320bp|location=Sequence derived from alignment at L-elsbetiae_contig4996:1420..3739+ (Laminarionema elsbetiae ELsaHSoW15) AGGCAAGTGTTGGTCGAGCAGGCAGGCGCGACGTTCGACGTCTACCCGGC
GTCGATAACTACCAAGTACTACAACGCGCAGGTGAAATGATGCCATTCAG
GCAAGAAGTGCAGCGGCGGAAGAAAGTATGGCCACGGCGCAAGTCCGACC
CTCTCAAAAACTCCCCCAACACTCGCGAAAGCGTGGGCAAAGCCCTTACC
GGCCATGTGATACTTGATACTTGATACGCAGGTCGAACAACTTATGTACA
ACATGTACCATACCTTTTTGCCTTGCAGCAAAGGAAGCGGAGTAACCTGC
ACTGACAACACGGTATTTATCACAACACACATACTTCCTCTGTCTCATAA
GTCTGGGTGCTTATGCGCACTAAATCGTTTGGGTACTCTCATGTTGACGT
TTATGCTTTAGTTGGGTGCGTTAGAAAGACAACACGCAGGGCTAGCCCAT
GAAAAAAAAAAAAACGGAGTTGGTCTTCAACCCTAAAATCATGTCAAAAT
ATACCCCATTTTGGCACTTTGCGATCGATTTAGCCCCAATATTGCCCGGT
TTCGGACGTTTCCGCGTCGAGCAGTAGCGATTACCTGGCTACAAATTGTT
AGGGTAAGCGTGCGTGCGTTAACCTCACGTCTACATCCAAATCAATGGTT
GTTTTGCGATTTTCGGCATTTTTTCACCGTTTAAATTTATGGCAATTTTC
CTGTTGCCGGGTCTCCTATACGTTTTTACTTGGAAAAGGGGGGCAAAACG
GCCTTTTTGGGGCCGACCGACTTTCTTGCAGCAGCCGAAAGCACCCACTA
CTGTATGAAAATAGCAATGTTCTTGGCTCAAAAAACGTCGAGGAAATTCA
ATAAAACAGTCGAAAATCGAATCGGACACCGTTAAGGACTCGTCCAAACA
TAAGTACCTACCCAGACTTATGAGACAGAGGAAGTATGTATATAAGCACC
TTGTGTGCAGTATATGTTATCCCGGAGAGCGCTGTATCGGGTCGCAAGTA
TCTCAGCGGCGGTCCCTATCCTGTCGGCGTGAACACGGTGGTGTGCGCTT
GTTTGAGTGCAGGTGAACCTGTGGCGGCAGACGCAGGCGACGGTACCCGT
TCTGGCGCTGAGATCGGCGGACGAGCTTGAAGGTCTTGAGGGTATAATCG
TCTTGTTCGATCTCAGGAAGGTGTGCGAGATAAAAAAATAGGTTGGCAAC
AGCTACACCGGGTGCTGTGCTGTGTGCTGTGTGCTGTGTTGTGTGTTGCG
CTTCCCTTCGCTTCCCTGCGCGAGTAGGATGTAGTGGTGGAGAGAGCCTG
CTTTGGTACAGTATCCCATTTTTTTCTTCCTTTTCTTCTTCACGTTTATT
TCCAGTGTTCGATGGGCTCCTTGTCACCAGGGCATCTTGCCAGAGTAATG
AACCATGGTTTGGTATCCCATACTGCTGTTAGTCGGGAATAAATAGGCAT
GGCTACTACATGCATACGCTGTTTTTTTTCTCGTGTTGTTTTTTTCCAGC
CTAAATATCGTGAACACGAGCTATTTCAACTTGGAGAGGTACCAAAGCGG
TTGGTGGAGAGTGCTGCAGCGTTGTGGTGAGGTAGTGTATACTCGGTGGG
TCAAGAGTCCCCCCCAGCCTCCCTCCCTCTTGCCTCCCTCGTTGGCACAC
ACAGGGCACCAGTATCCCCCTCGCCCAACACAAGCTTCCGCCCTTGTTTT
GTTTACCCTTTGTTGCGTGTCTGCGTTAACACACACCCCCGCGGTCTTGT
TTCCATTGCGCTCGTGGCTTTCTTTTCCCCCCTCTTTCCCAGGAATCTAG
CTTTGCCGAGGCGGCTCAGTGGGCGGCTTTCGTGAACGATAGGGAGCAGT
GCGCCTTCCGAGTTTGCGTCGGAAGCAAGGTGCGCGCGCCTCTTGTTTGT
GTTCGAGCTCTCACCACCCCAAAGCAATCAACCCGCAGCAGTAGTTTGAG
GTGTGTAAACCGTGCGTGCTTTTTTCTTGAGTTCGTGACTGACCGAAGTG
TTGGTTTCTGCCAACCAATGGCGGCGCACACTGCAAGAAGCCTTGCATAT
CATGTTGGTATATTTAGTTCCGCAGACTTTTCGCAGCGGTCGGCGCACCT
GTCGCCCCGTCGCCGCGTTTCATGCGTTATTGTGTCCTTGGACCCCCGCC
TCTACGCGTGTACTTGCTATGAATGATGGCGTGGCCAACCACAGCTTGAT
TTGGTGCCGGAGGATGGAGAAGAAGCAGCCGGTGGTTCCCGCTTCGGCGA
AGAGCTTTCAGCCCCTCCTGAAGACATAAAACCAGCGGAACCGAACGGCG
GGGGGGGGGGTGACGGAGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig4996:1420..3739+ >mRNA_L-elsbetiae_contig4996.12991.1 ID=mRNA_L-elsbetiae_contig4996.12991.1|Name=mRNA_L-elsbetiae_contig4996.12991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig4996:1420..3739+ (Laminarionema elsbetiae ELsaHSoW15) AGGCAAGTGTTGGTCGAGCAGGCAGGCGCGACGTTCGACGTCTACCCGGC GTCGATAACTACCAAGTACTACAACGCGCAGAGGCAAGTGTTGGTCGAGC AGGCAGGCGCGACGTTCGACGTCTACCCGGCGTCGATAACTACCAAGTAC TACAACGCGCAGGTGAACCTGTGGCGGCAGACGCAGGCGACGGTACCCGT TCTGGCGCTGAGATCGGCGGACGAGCTTGAAGGTCTTGAGGGTATAATCG TCTTGTTCGATCTCAGGAAGGTGAACCTGTGGCGGCAGACGCAGGCGACG GTACCCGTTCTGGCGCTGAGATCGGCGGACGAGCTTGAAGGTCTTGAGGG TATAATCGTCTTGTTCGATCTCAGGAAGGAATCTAGCTTTGCCGAGGCGG CTCAGTGGGCGGCTTTCGTGAACGATAGGGAGCAGTGCGCCTTCCGAGTT TGCGTCGGAAGCAAGGAATCTAGCTTTGCCGAGGCGGCTCAGTGGGCGGC TTTCGTGAACGATAGGGAGCAGTGCGCCTTCCGAGTTTGCGTCGGAAGCA AGCTTGATTTGGTGCCGGAGGATGGAGAAGAAGCAGCCGGTGGTTCCCGC TTCGGCGAAGAGCTTTCAGCCCCTCCTGAAGACATAAAACCAGCGGAACC GAACGGCGGGGGGGGGGGTGACGGAGGCCTTGATTTGGTGCCGGAGGATG GAGAAGAAGCAGCCGGTGGTTCCCGCTTCGGCGAAGAGCTTTCAGCCCCT CCTGAAGACATAAAACCAGCGGAACCGAACGGCGGGGGGGGGGGTGACGG AGGC back to top
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