mRNA_L-elsbetiae_contig4944.12908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4944.12908.1
Unique NamemRNA_L-elsbetiae_contig4944.12908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4944.12908.1 vs. uniprot
Match: D7FRU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.190e-33
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   16 AWERWAYWSPAERHSGGAVVVCLLMYPVVVTTLLRVLDCWEVEGM------EGSWLRADTSVECSSGEHQKYQVMAAVFLGLYGLGLPLSLAAMVLWAR 294
            AWERW  WS AERH+  AVVVCLL+YPVV T LLRV DC + EG       EGSWLRADT+VECSSG+H  Y+++AA  LGLYGLGLPL+LA +V WA+
Sbjct:  838 AWERWGRWSAAERHTCAAVVVCLLLYPVVCTVLLRVFDCRDGEGNGDADDGEGSWLRADTTVECSSGQHTSYEMIAATCLGLYGLGLPLALATIVYWAK 936
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BLAST of mRNA_L-elsbetiae_contig4944.12908.1 vs. uniprot
Match: A0A6H5KU24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU24_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.360e-21
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   16 AWERWAYWSPAERHSGGAVVVCLLMYPVVVTTLLRVLDCWEV----EGMEGSWLRADTSVECSSGEHQKYQ 216
            AWERW  WS AERH+  AVVVCLL+YPVV T LLRV DC E     +  EGSWLRADT+VECSSG H+ Y+
Sbjct:  135 AWERWGRWSAAERHTCAAVVVCLLLYPVVCTVLLRVFDCREGNRDDDDGEGSWLRADTTVECSSGHHKSYE 205
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BLAST of mRNA_L-elsbetiae_contig4944.12908.1 vs. uniprot
Match: A0A0L0DF90_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DF90_THETB)

HSP 1 Score: 57.0 bits (136), Expect = 3.760e-6
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   70 VVVCLLMYPVVVTTLLRVLDCWEVEGMEGSWLRADTSVECSSGEHQKYQVMAAVFLGLYGLGLPLSLAAMVL 285
            +++  L+YPV+V T L +  C    G+E S L +D  VEC  G H +Y  +AA+F+ LY +G+P+    +++
Sbjct: 1454 IILTFLVYPVLVRTTLSMYHCKSFVGIEHSRLVSDLEVECFVGRHAQYAGIAAIFVVLYVIGIPVGALLLMI 1525
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BLAST of mRNA_L-elsbetiae_contig4944.12908.1 vs. uniprot
Match: A0A7S4VBS8_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VBS8_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 2.150e-5
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:   28 WAYWSPAERHSGGAVVVCLLMYPVVVTTLLRVLDCWEVEGMEGSWLRADTSVECSSGEHQKYQVMAAVFLGLYGLGLPL 264
            WA     +     A++V  ++YP VV TL+ +L C + +      LR D  VEC +G+H  + V+A   L +YG G+PL
Sbjct:  152 WALHESRDSKIRWAIIVVFVIYPAVVQTLVSILACEDYDTFR---LRVDADVECFTGDHFFWMVVAIFGLIVYGFGIPL 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4944.12908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRU6_ECTSI1.190e-3365.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU24_9PHAE6.360e-2166.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0DF90_THETB3.760e-636.11Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S4VBS8_9DINO2.150e-535.44Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4944contigL-elsbetiae_contig4944:7026..9782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size566
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4944.12908.1prot_L-elsbetiae_contig4944.12908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4944 7027..9782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816493.2303512-CDS-L-elsbetiae_contig4944:7026..73741622816493.2303512-CDS-L-elsbetiae_contig4944:7026..7374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 7027..7374 -
1691683599.3896487-CDS-L-elsbetiae_contig4944:7026..73741691683599.3896487-CDS-L-elsbetiae_contig4944:7026..7374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 7027..7374 -
1622816493.2440517-CDS-L-elsbetiae_contig4944:9018..91591622816493.2440517-CDS-L-elsbetiae_contig4944:9018..9159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 9019..9159 -
1691683599.4080327-CDS-L-elsbetiae_contig4944:9018..91591691683599.4080327-CDS-L-elsbetiae_contig4944:9018..9159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 9019..9159 -
1622816493.2571008-CDS-L-elsbetiae_contig4944:9707..97821622816493.2571008-CDS-L-elsbetiae_contig4944:9707..9782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 9708..9782 -
1691683599.4183576-CDS-L-elsbetiae_contig4944:9707..97821691683599.4183576-CDS-L-elsbetiae_contig4944:9707..9782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 9708..9782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4944.12908.1

>prot_L-elsbetiae_contig4944.12908.1 ID=prot_L-elsbetiae_contig4944.12908.1|Name=mRNA_L-elsbetiae_contig4944.12908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
VGGGGAWERWAYWSPAERHSGGAVVVCLLMYPVVVTTLLRVLDCWEVEGM
EGSWLRADTSVECSSGEHQKYQVMAAVFLGLYGLGLPLSLAAMVLWARGG
GGAPSEVDDDDDDEEDDDGDDTTVAVRRIRGGGVLVQGGGDADLEAAATT
SSPTLSAGDGFNGSAAAAAAAAAAAAAAKTSTADGNNG
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mRNA from alignment at L-elsbetiae_contig4944:7026..9782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4944.12908.1 ID=mRNA_L-elsbetiae_contig4944.12908.1|Name=mRNA_L-elsbetiae_contig4944.12908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2757bp|location=Sequence derived from alignment at L-elsbetiae_contig4944:7026..9782- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGTGGTGGTGGCGCTTGGGAGCGGTGGGCTTACTGGAGCCCGGCGGA
ACGCCACTCTGGGGGCGCCGTGGTGGTGAGCGCGGTTAGGATGTGTGTGT
GTGTTGTATCTTGATGGCCCGTATTTTTATCGGCGCGGAAAACGGATGCG
TACCTTATTACTCCGGAAAACGGTTTGGTTTGGTTTGGTTTGGTTTGTCT
GGCCCCCGTGTACACAGAGCTCGATTGTTTGGGTGGACTGCTGTTGTTTG
TTTCGCTGCTGTCCACGGCTTCTTCGGTGCTGTTTCTTTCCTTCTCTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTCTGCTTCTTTGTATCTCTCTCTC
TCTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTGTTTC
TTTGTATCTCTCTCTGTCTGTCTTGGATGTTCAAATCGCCAGCAAGCTAG
GCCCGACACCGCTAAAAGAGAAAGAGTTAAAAAGGAAAAGTGAAACGCCT
TTTCAGGGAGACGGGCTGCTGCACACGCGCACTAACCCCCTCTCGTCACC
TCTCGATACCGCGGGACCTCTCGCTACCGGACGTGCTCTTCATCATGGTG
TATGTATTTGGGATGTGTACCAGGTCTGCTTGCTGATGTACCCGGTGGTG
GTGACGACCCTGCTGCGGGTGCTCGACTGCTGGGAGGTGGAGGGCATGGA
AGGCAGCTGGCTTAGGGCAGACACCAGCGTCGAATGTTCATCAGGAGAGC
ACCAGAAGTACCAGGTGGGTTGATGAAAAAATGAAACTGGCGAAACGACC
ACTACTGCTGTTTTCGATTTACTTATTTCTTTTTTTTTATCATATAAAAA
GATGCAAGCGCTCGAGAGGCATCTTGCAAGGGCTCTGACCCGTGGCCACA
AGTCACACAGAAGGGCTCCCCCCACGGGGCCCCCACACCCGCCCTTCTGC
GGTGCTTGCCTTCTATTTTTAACGCGAGAAGTGTTCTGCCTTTGCACAGC
AGTTCGTGTTTTATCTAGACGCTGAAAAATATTTTAAGATGTATGTCCGT
CTAGTCCTTTCTGCGCGAGCGCTCCAACACGGCGAACGGTTTAGTCTGGC
TCTGAAATCGCGGGGATGTCAAAATGGTTTATACATGCATGATGGAGGTT
TTCTGTGTCTCAGTCGTGGGACGCTTGGGGGACCCGCAATATAACTTGTC
GGCCTTGTTCGGGCTGTGGAACCTGTAGCACACACTAGGTTTGTCTTCTG
AGGGCACTATCCAGTAGCTTATGTCTGAGCAGATCAGTAGCGTGGAGAAA
TTTAGAGGAAAACGGAGATATTTGGGGCTCGAGAGGCAGAAAACATTTGC
CTAGCGATATTTACTCTGAGAGATAATCCAGCGTATTTTGGGAGTTGATA
AATTCCAATTCCTTGGAGCATCCCCGGGTACTCCGCCAGCACCTCAGACC
ATCGCTGCAGCCCATCCAGCCGAAGCTAAGCCATCAAAATGGACTAACAT
TCGTAGTATCATGCACTGCTGTGGTGATACTGGGTTAGGCTTAGCCTTTT
TATTTGCGGTCTGTGCCTGGTGTGAGTGTCAAACGACACCCGAAATTCCG
GTGCTTGCTCGTTGTCCCGCTGCGTTTTGGTGGGCGTCAGTCAATCAACT
GACCAGTTTGTCGACGGCTGAAAACCGGCATCGGAAACTTACACCACTAC
TGTAGCTGTCATCACCTTTTCGTATCACCCGTTCATTACCGTGTTCGAGC
TCGATAGCTCAAGAAAACGATGGTGGCATCGGGGCATGTTGTCGCTCAAT
TTCCAAGTGGAGACCAGGTTCTCTCTCCGAGGGGAGGTGTTATCTTGCGA
GGTTACTTGTGGGGGTGTGATCTTGTGTGGTTCGGCATGGATTCACTGAT
AGCAGGTGGCAGTTTCCGCGAGGGCTGATTTTAGTTGACCAAAATAGTTT
CGAGACCACTGCATGCAGCCGGTGTGTCCTCTTTCAGCCCCCCGCTGCCC
AGTAGTCGAACCGTCACAACCTGTGTTCGAGCTCGCCGAGCCGAGGTATC
TCTGCCAAAGCACGTGCTCCGAGCGGTCTAGTCTGTATCCCAGTGGTATA
TGGAGGAGTTCTGCGAACCGTATCACATCTACCGAGCCCCCTCTAGGGTA
ATTATTTGCCGCCCTCCCCCAACATGACAACACTGGTCTCATCTGCACGA
ACCGGACCGATGAATACCTTCATCCACGGGGCCCCCAGGTAAAATGGTCT
CTCGAGTCACTGACGTCACCCTGTCGAAAAAGGTATATACCACAAATTAT
GGTTAATAGTACAAAGGCACGACGGTGGCGTCGATTTTTCACACGATTGT
GCTTTGTGGGCCTGTCTCTTTCCCCCCCTCGCGTACCCCCCCCCTTGCAA
CCCCGTAGGTGATGGCCGCCGTTTTTCTCGGCCTGTACGGCCTTGGCTTG
CCCCTTTCGCTGGCGGCCATGGTCCTCTGGGCGAGGGGCGGGGGCGGCGC
CCCTTCAGAAGTAGACGACGACGACGACGATGAGGAGGACGATGACGGCG
ACGACACCACGGTCGCCGTCCGCAGGATACGCGGGGGGGGAGTGCTGGTG
CAGGGCGGCGGCGACGCCGACTTGGAGGCCGCCGCGACGACTTCTTCCCC
CACGCTTTCCGCCGGGGACGGGTTCAACGGATCGGCGGCGGCGGCGGCAG
CGGCAGCGGCGGCAGCGGCGGCCGCAAAAACCAGCACCGCGGACGGCAAT
AACGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4944:7026..9782-

>mRNA_L-elsbetiae_contig4944.12908.1 ID=mRNA_L-elsbetiae_contig4944.12908.1|Name=mRNA_L-elsbetiae_contig4944.12908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig4944:7026..9782- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGTGGTGGTGGCGCTTGGGAGCGGTGGGCTTACTGGAGCCCGGCGGA
ACGCCACTCTGGGGGCGCCGTGGTGGTTGGTGGTGGTGGCGCTTGGGAGC
GGTGGGCTTACTGGAGCCCGGCGGAACGCCACTCTGGGGGCGCCGTGGTG
GTCTGCTTGCTGATGTACCCGGTGGTGGTGACGACCCTGCTGCGGGTGCT
CGACTGCTGGGAGGTGGAGGGCATGGAAGGCAGCTGGCTTAGGGCAGACA
CCAGCGTCGAATGTTCATCAGGAGAGCACCAGAAGTACCAGGTCTGCTTG
CTGATGTACCCGGTGGTGGTGACGACCCTGCTGCGGGTGCTCGACTGCTG
GGAGGTGGAGGGCATGGAAGGCAGCTGGCTTAGGGCAGACACCAGCGTCG
AATGTTCATCAGGAGAGCACCAGAAGTACCAGGTGATGGCCGCCGTTTTT
CTCGGCCTGTACGGCCTTGGCTTGCCCCTTTCGCTGGCGGCCATGGTCCT
CTGGGCGAGGGGCGGGGGCGGCGCCCCTTCAGAAGTAGACGACGACGACG
ACGATGAGGAGGACGATGACGGCGACGACACCACGGTCGCCGTCCGCAGG
ATACGCGGGGGGGGAGTGCTGGTGCAGGGCGGCGGCGACGCCGACTTGGA
GGCCGCCGCGACGACTTCTTCCCCCACGCTTTCCGCCGGGGACGGGTTCA
ACGGATCGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCAGCGGCGGCCGCA
AAAACCAGCACCGCGGACGGCAATAACGGCGTGATGGCCGCCGTTTTTCT
CGGCCTGTACGGCCTTGGCTTGCCCCTTTCGCTGGCGGCCATGGTCCTCT
GGGCGAGGGGCGGGGGCGGCGCCCCTTCAGAAGTAGACGACGACGACGAC
GATGAGGAGGACGATGACGGCGACGACACCACGGTCGCCGTCCGCAGGAT
ACGCGGGGGGGGAGTGCTGGTGCAGGGCGGCGGCGACGCCGACTTGGAGG
CCGCCGCGACGACTTCTTCCCCCACGCTTTCCGCCGGGGACGGGTTCAAC
GGATCGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCAGCGGCGGCCGCAAA
AACCAGCACCGCGGACGGCAATAACGGC
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