mRNA_L-elsbetiae_contig49.12827.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig49.12827.1
Unique NamemRNA_L-elsbetiae_contig49.12827.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 2.850e-139
Identity = 196/214 (91.59%), Postives = 206/214 (96.26%), Query Frame = 3
Query:  237 GSAAAPFQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGAESE 878
            GS AAP QSGVRSMQT+HRTTLMLRAKVVVVGDACVGKT+VVQMFKSGGHDYPKNYIMTIGVDFGVKQVK+PETD VVELFLFDCPGQGVFNKLEQGAAYYENAAFVC+VFDVSNRDSFESCGRWLQGVRAALP  SAPLPGV+IANK+DLREGGINARAVVETKEG+LFA QNGL+YFETS+AGAKGIDAPFHHMAT FH+TYEKTIEGAE E
Sbjct:   10 GSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGE 223          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 1.660e-102
Identity = 152/165 (92.12%), Postives = 160/165 (96.97%), Query Frame = 3
Query:  237 GSAAAPFQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETK 731
            GS AAP QSGVRSMQT+HRTTLMLRAKVVVVGDACVGKT+VVQMFKSGGHDYPKNYIMTIGVDFGVKQVK+PETD VVELFLFDCPGQGVFNKLEQGAAYYENAAFVC+VFDVSNRDSFESCGRWLQGVRAALP+ SAPLPGV+IANK+DLREGGINARAVV T+
Sbjct:   10 GSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVVGTE 174          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 264 bits (675), Expect = 2.850e-84
Identity = 126/219 (57.53%), Postives = 170/219 (77.63%), Query Frame = 3
Query:  225 VMAPGSAAAPFQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGAESES 881
            V+   +A   F+S +RSM+++H+  LMLR KVV+VGDACVGK+A+VQMF  GG  YPKNY+MT GV F VKQV IP+T+  VEL+LFDC GQ +FN+ EQ    +EN ++V +V+DV NRDSF+SC +WLQGVR+     S+ +PGVL+ANK+DLREGGIN+RA V  +EG+ FA++N LE+FETS+A AK +DAPF+ +A+ FHQ YE+T++ AE+ S
Sbjct:   15 VVTLDAAVTGFKSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRST--RQSSMIPGVLVANKSDLREGGINSRAAVSDEEGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALS 231          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 258 bits (660), Expect = 1.920e-82
Identity = 124/199 (62.31%), Postives = 156/199 (78.39%), Query Frame = 3
Query:  276 MQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGAE 872
            M+  H+  LMLR+KVV+VGDA VGKTA+ QM  S GH+YPKNY+MT  VDF VKQ+++PE +  VELFLFDC GQGVFNKL+  A +++NA+FVC+VFDV NR+SF+SCGRWLQGVRA  P A AP+PGVLI +KADLREG   +RAVV+ +EG  FA++NGL YFE S+A + G++APF HMA  FH  YE ++  AE
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTA-APMPGVLIGSKADLREG---SRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAE 195          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A7S3JRK5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK5_9STRA)

HSP 1 Score: 234 bits (597), Expect = 7.870e-73
Identity = 121/211 (57.35%), Postives = 152/211 (72.04%), Query Frame = 3
Query:  240 SAAAPFQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGAE 872
            S+A  +QS VRSM++ HR+ LMLR KVVVVGDA VGK+A++ MF SGG  +PK Y+MT  VDF VKQV IPE+ + VEL+LFDC GQ +FN++E   A+YENA+F+CLV+DVSN  SFESCG+WLQ V  + P+    LPGVLIANK DL  GG   R VV T++GQ FA  N L YFETS+   +  D PF H+A +F + YE TI  A+
Sbjct:    6 SSAVEYQSAVRSMESGHRSILMLRCKVVVVGDAAVGKSALISMFHSGGSSFPKQYLMTAWVDFRVKQVSIPESSTAVELYLFDCGGQSIFNQIEANNAHYENASFLCLVYDVSNASSFESCGKWLQMVSKSRPS----LPGVLIANKKDL--GGELGRRVVSTQKGQEFASANNLAYFETSALEGE-FDEPFRHIAIEFAKKYEDTIAHAQ 209          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 229 bits (585), Expect = 4.740e-71
Identity = 105/203 (51.72%), Postives = 153/203 (75.37%), Query Frame = 3
Query:  255 FQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIE 863
             QSG+RSM+TSH+T ++LR K+++VGDACVGKTA+ Q F SGG  YPKNY+MTIG +F VKQV IPET+ +VELF++DC GQ +FN+L+  + YYENA+ V +V++V+NRDS  SC +W+ GV+A +  +  PL G  + NK + R+G I++RA V+  E +  A+  G+ YFETS+A   G+DAPF ++A +F++ YE+T++
Sbjct:    1 MQSGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKA-IQNSGVPLVGAFVGNKCEFRDGSIDSRAEVDILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ 202          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A7S0SQ35_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQ35_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.390e-67
Identity = 101/204 (49.51%), Postives = 153/204 (75.00%), Query Frame = 3
Query:  261 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGAE 872
            SG+RSM + H++  +LR K+V++GD+CVGK++++Q+F+SGG  YPKNY+MTIG DF VKQV IP+T+ VVEL++FDC GQ +FN+LE  + YYENAA V +V+D+ N+++ +S  +WL G+++A+   S  L GVL+ NK+D R+G +++RA V  ++ Q F+K  GL YFE S+A   G+  PF H+AT+F++ YE T+  A+
Sbjct:   14 SGIRSMDSKHKSLTVLRCKLVIIGDSCVGKSSLLQVFQSGGTTYPKNYMMTIGADFNVKQVPIPDTNIVVELYIFDCAGQPIFNQLEMNSKYYENAAAVMVVYDIGNQETLQSTTKWLTGLKSAVSNPS-DLIGVLVGNKSDYRDGSVDSRAEVVKEDAQRFSKDLGLAYFEASAASNIGVTEPFLHVATEFYKKYEDTLRKAD 216          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA)

HSP 1 Score: 217 bits (553), Expect = 5.060e-66
Identity = 111/207 (53.62%), Postives = 145/207 (70.05%), Query Frame = 3
Query:  252 PFQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGAE 872
            P +S +RSM+T+HRT LMLR KVVVVGDA VGK+A++ MF SGG  YPK Y+MT  VDF VKQV IP+T + VEL+LFDC G  VFN++E+ A+ Y+ A F+ +V+DV+  DSF SC +W+QGVR         LPGVL+ANK DL E     R VV+ + G+ FAK+NGL YFETS+      + PF H+A +F + YE+T+  AE
Sbjct:   24 PMESCLRSMETTHRTILMLRCKVVVVGDATVGKSALISMFHSGGASYPKQYVMTSWVDFRVKQVDIPDTSTAVELYLFDCAGDPVFNQVEENASQYDQAGFLFVVYDVTKEDSFASCAKWIQGVRKGREDR---LPGVLVANKIDLEE-----RRVVDEQRGRDFAKENGLVYFETSALQGN-YEGPFRHVAMEFAKKYEETVARAE 221          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A067BYM3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BYM3_SAPPC)

HSP 1 Score: 213 bits (543), Expect = 8.190e-65
Identity = 108/205 (52.68%), Postives = 146/205 (71.22%), Query Frame = 3
Query:  261 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGAES 875
            SG+RSM+T+H +T++LR K VVVGDA +GKTA++Q  KS GHDYPKNYIMT   +  VK + IPET+++VEL+L DCPGQ +FN+ E G+ ++E A  + LVFDV++++SF+SC +W Q V  A PA +  + GVLI NKAD +EG    R  + TKE + FA+QN L+YFE S+     IDAPF HMAT F + Y+   E AE+
Sbjct:    2 SGLRSMETTHTSTVVLRCKAVVVGDAGIGKTALLQTLKSSGHDYPKNYIMTSSPELIVKSLPIPETNAIVELYLLDCPGQSIFNQREFGSMHFEGACMIVLVFDVNSKESFKSCIKWYQEV--ANPAPNHQISGVLIGNKADEKEGN---RDAISTKEAEDFAEQNNLKYFECSARLGTNIDAPFLHMATTFKKKYDDLAERAEN 201          
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL)

HSP 1 Score: 213 bits (542), Expect = 1.050e-64
Identity = 101/203 (49.75%), Postives = 147/203 (72.41%), Query Frame = 3
Query:  261 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGVLIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPFHHMATDFHQTYEKTIEGA 869
            SG+RSM+T+H++T +LR KV +VG+A VGKTAVVQ+ KS GH++PKNY+MT  V+   K + IP+T+ VVEL+LFDC GQ +FN+L+ G  +Y+ A+   +VFDV+N++SF+SC +W Q VR A P  +  +PGVL+ANK DLR    N R  + TKE + FAK+N +++FE S+    G++APF ++A  FH+ Y+ T + A
Sbjct:    2 SGLRSMETTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN--IPGVLLANKTDLR---YNNRDAISTKEAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig49.12827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJQ1_ECTSI2.850e-13991.59IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A6H5KZL0_9PHAE1.660e-10292.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XVJ0_9STRA2.850e-8457.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZCC9_9STRA1.920e-8262.31IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A7S3JRK5_9STRA7.870e-7357.35Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3M1Q0_9STRA4.740e-7151.72Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SQ35_9STRA2.390e-6749.51Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A8J2SZ95_9STRA5.060e-6653.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067BYM3_SAPPC8.190e-6552.68Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A0N7L680_PLAHL1.050e-6449.75Intraflagellar transport protein 27 homolog n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig49contigL-elsbetiae_contig49:10817..13788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.3
Seed ortholog evalue7.6e-110
Seed eggNOG ortholog2880.D7FJQ1
Preferred nameIFT27
KEGG koko:K07934
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0079@1,KOG0079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Ec32 ortholog descriptionIFT27, Ras superfamily GTPase
Ec32 orthologEc-06_010640.1
Exons5
Model size1095
Cds size687
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816484.4008305-UTR-L-elsbetiae_contig49:10816..110091622816484.4008305-UTR-L-elsbetiae_contig49:10816..11009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig49 10817..11009 -
1691683593.0269094-UTR-L-elsbetiae_contig49:10816..110091691683593.0269094-UTR-L-elsbetiae_contig49:10816..11009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig49 10817..11009 -
1622816484.470262-UTR-L-elsbetiae_contig49:13573..137881622816484.470262-UTR-L-elsbetiae_contig49:13573..13788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig49 13574..13788 -
1691683593.0952127-UTR-L-elsbetiae_contig49:13573..137881691683593.0952127-UTR-L-elsbetiae_contig49:13573..13788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig49 13574..13788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816484.4174283-CDS-L-elsbetiae_contig49:11009..110671622816484.4174283-CDS-L-elsbetiae_contig49:11009..11067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 11010..11067 -
1691683593.0399938-CDS-L-elsbetiae_contig49:11009..110671691683593.0399938-CDS-L-elsbetiae_contig49:11009..11067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 11010..11067 -
1622816484.428133-CDS-L-elsbetiae_contig49:11676..117891622816484.428133-CDS-L-elsbetiae_contig49:11676..11789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 11677..11789 -
1691683593.0500107-CDS-L-elsbetiae_contig49:11676..117891691683593.0500107-CDS-L-elsbetiae_contig49:11676..11789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 11677..11789 -
1622816484.4383247-CDS-L-elsbetiae_contig49:12042..122491622816484.4383247-CDS-L-elsbetiae_contig49:12042..12249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 12043..12249 -
1691683593.061982-CDS-L-elsbetiae_contig49:12042..122491691683593.061982-CDS-L-elsbetiae_contig49:12042..12249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 12043..12249 -
1622816484.4485328-CDS-L-elsbetiae_contig49:12853..129671622816484.4485328-CDS-L-elsbetiae_contig49:12853..12967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 12854..12967 -
1691683593.0717235-CDS-L-elsbetiae_contig49:12853..129671691683593.0717235-CDS-L-elsbetiae_contig49:12853..12967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 12854..12967 -
1622816484.4598775-CDS-L-elsbetiae_contig49:13378..135731622816484.4598775-CDS-L-elsbetiae_contig49:13378..13573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 13379..13573 -
1691683593.084738-CDS-L-elsbetiae_contig49:13378..135731691683593.084738-CDS-L-elsbetiae_contig49:13378..13573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig49 13379..13573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig49.12827.1prot_L-elsbetiae_contig49.12827.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig49 11010..13573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig49.12827.1

>prot_L-elsbetiae_contig49.12827.1 ID=prot_L-elsbetiae_contig49.12827.1|Name=mRNA_L-elsbetiae_contig49.12827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
MSRVMAPGSAAAPFQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKTAVVQ
MFKSGGHDYPKNYIMTIGVDFGVKQVKIPETDSVVELFLFDCPGQGVFNK
LEQGAAYYENAAFVCLVFDVSNRDSFESCGRWLQGVRAALPAASAPLPGV
LIANKADLREGGINARAVVETKEGQLFAKQNGLEYFETSSAGAKGIDAPF
HHMATDFHQTYEKTIEGAESESLRLSLK*
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mRNA from alignment at L-elsbetiae_contig49:10817..13788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig49.12827.1 ID=mRNA_L-elsbetiae_contig49.12827.1|Name=mRNA_L-elsbetiae_contig49.12827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2972bp|location=Sequence derived from alignment at L-elsbetiae_contig49:10817..13788- (Laminarionema elsbetiae ELsaHSoW15)
GCTTGTTGTTTGCTATGCGACGCTCTTTTCTCCCACCCCACGCTGTACAC TTACTGCCTATTTGGTTTAATCAAGGCTAAACTACGCCAAGATCTTGTGG CAGTCTCAAATACAAAAAATAAAGGAAACGTTGCGGAGCCAAGATCTTGC GGGGTAGGAGCAGGTTCCTCCGATCTGCCGCCTGCTGGCCGTGACTATAG GACGTAGGCCAGGTGATGTCACGGGTAATGGCTCCGGGATCCGCTGCTGC CCCATTCCAAAGTGGAGTCCGGAGCATGCAAACAAGTCACAGAACTACGT TGATGCTGCGAGCGAAGGTCGTCGTCGTCGGAGATGCCTGTGTCGGGAAG ACGGCGGTGGTGCAGATGTTCAAGAGCGGTGGCCATGACTATCCAAAAAA TTATATAATGGTGAGAGAGAAAGGGTGAGGAGAGGGTGTGCTCTTACGGC TGTATTGAAGCCAGTTACAGATTTGCAGCCGCCGTCTCATATGCGCAAGT ACGTTACTTGCCGTTATGGGCGACTTCCGAATCTTTGGAAGATCCTGTGC ATGCAACGCCCATTCTCATGGATAGGATATGGGATCCATCAACCCAGAGA GCGGTCCGTGTTATCGATTCATTGGTACAGGGATCATTGATCTTGCCCCC CCCCACCCTAGACAACAATCTTCGAAGAAACCTACCCTCTTGTAGCTATA TCTAGTAGCAGAGGGCAAATATCGTTCGGTCCAAATCGTTTCCTCTCATA CAAATTCAAATTTCAGTCTGCTGTTTCCCTCACTCCGGATCGACGGCAAT GCGAACGCGCGCCCCGTTAAGACTATCGGAGTAGACTTTGGAGTGAAGCA GGTCAAGATTCCCGAGACGGATAGCGTGGTGGAGTTGTTCCTGTTCGATT GCCCCGGCCAAGGAGTTTTCAATAAGCTTGAACAGGTGAGTAAAAAAGGA GTATTTGGTTGTTGACCTGTGGCAGAATTGTGCACGGGGGAGGTTTTAAA CTTTTCTCATATTTTCGGTGTTTTTCGACTCGGCCGGACCACCAGTACTA CATCACTGTATTGAATCGTTAATCTACCACGGAGTTCCGTCTCTAATGTG CGGGGAGTTTTTTTATCCCTGATTTATTTTCAAAAAAGACGGCCGACTTG ACGGGCAGTTTTAGAAGAGTTGATATGGGTTTGTTCCGTGCTTGATCAAT GCCTTGGCTGCTTCCTCTCTATGTGCGGAGCACAACTCGAACCCGGGAAC GAGCACAGTGTTTATCATCCTGGGCCCACGAGCCAAAAAAACAGCAGTCC TTCTCGAACGATTTTTTCACGGGTTGGACGCATTGTAGGCCGCTCACATT ATGTAGATCATTTACACAAATTTGCGAACGCAGGAAACAGATCCCTACGA TGCCTACCCCGTACAAGTTGACTGGTCTAATGGTTTGGTTTCGGCTTCTT TATTTGCACCACACTGGCTGCCGCGCCACTGAATACCGATTGCTTGTTAT ACACACCCTGTCTCACCACGGTCAAACACACGATAACAGGGTGCGGCCTA CTACGAGAACGCAGCCTTCGTGTGCCTGGTTTTCGATGTCAGCAATAGAG ATTCCTTCGAGAGTTGCGGGCGGTGGCTGCAGGGAGTGCGGGCGGCCCTG CCCGCAGCATCGGCGCCCTTGCCGGGGGTGTTGATCGCCAACAAGGCGGA CCTGAGGGAAGGAGGCATCAATGCGAGGGCCGTGGTGGAAACAAAGGTAC TCGTTCTGCGTGCTTCCCGGCAGCACTTAACCCCGCCCTTGCTGAAATGC CTCCAATCCCTTGCCTCAACGATGAACTCTGCTGAGGGATTTATCCGAGT GTGCAGTGTCTCGTTGCGTAAACGACGCCCGAATCTGAAAAACGACTACT GTTGATCGTGTACGTAATCTGCTTCCACCTTCGTTTGTGTTGCCGTAAAT ACGGCAGGCTCTTAGCTTGATCTCTACTCGCCATTCCGTGCGCTTGCAGG AAGGGCAGCTCTTCGCAAAGCAGAACGGGCTTGAGTACTTCGAGACGTCA TCGGCAGGCGCGAAAGGCATCGACGCGCCGTTTCATCACATGGCGACGGA CTTCCATCAGACGTGAGTCATGCCCTCGTTCTCAGCGAGCCAGTACCCCT TGGCTTTCACGTTTTTTTCCTTTTCTCAAGCGTCGGTCATGTACTGCATC AACCGCACACCAAATGTCTTTCAACGAAGTGGGGAGCGTCATAATGTACC GGGTAGATTTCACGTGCCGCATTGCTGGTAAATTTATCCCATGCGCCTCA GGTTGGTCTTCCATTCCGAGGGAAATATAGAACAATGCCCCGACGGCAGA AGTACAGCAGTGTGTTGGGCGGTTGTCACTCGTTCGCTCACCCACGGAAA TTTCGCGACGCCCCAAAGGTTTAACTCTTGATTTTGAATGTATTGGTACT GGCAACACAGCGTGTGCCAAGAGAAAAGCTCGCATGACGTGCCGGTTTAG ATTTACATTCGAAGCCCATCCATCAAAGCAGGTCCCTGGTAAATCTTGTT CATGATCTTGGGCCAACTGGTGCGCGTAGAGAATCAAAACATAAATCCGT CAGTAGGAGCCCGCGCAAAGTTTACCATGCTTGTGAACTTCGTCCACGTG CTTGCCTGAACTCGCTTTCATTTGCTTGTCTTTCTTCTGTACATACCATG GCCTATGGGCGGACCTTGCAGTTACGAGAAGACCATCGAGGGGGCGGAGA GCGAATCACTGAGGCTCTCCCTGAAGTAATTCGAAGCGTCATGAGCAGAC TTGTGGCTACAGTGAAAGCGCGTGAAGCTTCGCGAAACATGCTCCGTAAT AGATACACATCTACAGCAGTTGAGTATTTATGGGTCAACTGCAGCTTTAG GAAGTCGTGCCTTAAGTCCGGGAAAATCAGAGGCTGAAAATTGAGCAAAC GAGTGCGTTTTACTATAAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig49:10817..13788-

>mRNA_L-elsbetiae_contig49.12827.1 ID=mRNA_L-elsbetiae_contig49.12827.1|Name=mRNA_L-elsbetiae_contig49.12827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig49:10817..13788- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCACGGGTAATGGCTCCGGGATCCGCTGCTGCCCCATTCCAAAGTGG
AGTCCGGAGCATGCAAACAAGTCACAGAACTACGTTGATGCTGCGAGCGA
AGGTCGTCGTCGTCGGAGATGCCTGTGTCGGGAAGACGGCGGTGGTGCAG
ATGTTCAAGAGCGGTGGCCATGACTATCCAAAAAATTATATAATGATGTC
ACGGGTAATGGCTCCGGGATCCGCTGCTGCCCCATTCCAAAGTGGAGTCC
GGAGCATGCAAACAAGTCACAGAACTACGTTGATGCTGCGAGCGAAGGTC
GTCGTCGTCGGAGATGCCTGTGTCGGGAAGACGGCGGTGGTGCAGATGTT
CAAGAGCGGTGGCCATGACTATCCAAAAAATTATATAATGACTATCGGAG
TAGACTTTGGAGTGAAGCAGGTCAAGATTCCCGAGACGGATAGCGTGGTG
GAGTTGTTCCTGTTCGATTGCCCCGGCCAAGGAGTTTTCAATAAGCTTGA
ACAGACTATCGGAGTAGACTTTGGAGTGAAGCAGGTCAAGATTCCCGAGA
CGGATAGCGTGGTGGAGTTGTTCCTGTTCGATTGCCCCGGCCAAGGAGTT
TTCAATAAGCTTGAACAGGGTGCGGCCTACTACGAGAACGCAGCCTTCGT
GTGCCTGGTTTTCGATGTCAGCAATAGAGATTCCTTCGAGAGTTGCGGGC
GGTGGCTGCAGGGAGTGCGGGCGGCCCTGCCCGCAGCATCGGCGCCCTTG
CCGGGGGTGTTGATCGCCAACAAGGCGGACCTGAGGGAAGGAGGCATCAA
TGCGAGGGCCGTGGTGGAAACAAAGGGTGCGGCCTACTACGAGAACGCAG
CCTTCGTGTGCCTGGTTTTCGATGTCAGCAATAGAGATTCCTTCGAGAGT
TGCGGGCGGTGGCTGCAGGGAGTGCGGGCGGCCCTGCCCGCAGCATCGGC
GCCCTTGCCGGGGGTGTTGATCGCCAACAAGGCGGACCTGAGGGAAGGAG
GCATCAATGCGAGGGCCGTGGTGGAAACAAAGGAAGGGCAGCTCTTCGCA
AAGCAGAACGGGCTTGAGTACTTCGAGACGTCATCGGCAGGCGCGAAAGG
CATCGACGCGCCGTTTCATCACATGGCGACGGACTTCCATCAGACGAAGG
GCAGCTCTTCGCAAAGCAGAACGGGCTTGAGTACTTCGAGACGTCATCGG
CAGGCGCGAAAGGCATCGACGCGCCGTTTCATCACATGGCGACGGACTTC
CATCAGACTTACGAGAAGACCATCGAGGGGGCGGAGAGCGAATCACTGAG
GCTCTCCCTGAAGTAATTACGAGAAGACCATCGAGGGGGCGGAGAGCGAA
TCACTGAGGCTCTCCCTGAAGTAA
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