mRNA_L-elsbetiae_contig4888.12808.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4888.12808.1
Unique NamemRNA_L-elsbetiae_contig4888.12808.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.150e-40
Identity = 119/269 (44.24%), Postives = 152/269 (56.51%), Query Frame = 1
Query:  622 ADPLLQRTNSSSGMTSVXXXXXXXXXXXXXXXELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNGSGFR--YTNHRSKTGRTALFNAI--IFSRPSPRIVRLLVDAGADATTTVRVLDASGGLT-NTTPLGLTADLLRKNEMG-GKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSVPLVS-MLPVLRLRASKNGVVLVPLFRYSRK 1407
            A+PLL +T+     T+V               EL+Q+LGI GC   S GAHAL  AA     DIM +LT AGV+D TG AL +AA   HEA+VK L+ H   + G G    Y N R   G T L       FS+ +PRIVR+LVDAGAD T+ V+V++  GG+  N TPL  T   LRK  +  GK A++E   RLEAI RLLLR++AVHA SWLW SG   +G  T     T   P +P +  MLP+L+ R  +   ++  L RYS K
Sbjct:  264 ANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVD-TGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQ-APRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATE----TDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 3.600e-38
Identity = 104/235 (44.26%), Postives = 137/235 (58.30%), Query Frame = 1
Query:  718 ELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNGSGFRYTNHRSKTGRTALFNAI-IFSRPSPRIVRLLVDAGADATTTVRVLDASGGLTNT-TPLGLTADLLRKNEMGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSVP---LVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            EL+QQLG+ GCGG S G  +L+LAA     DIMG+LT  GV+D TG AL+VAAE+  E +VK L+ H  G  G  +   N     GRT L   I      SPRI R L+D GAD  +TV V  +    T+  TPLG     LR+N++GGK+A+EE+   L+AI RLL ++EAVHA SWLW S D  +G H    + ++  P+     L  M  VLR    K GVVL  ++R + +
Sbjct:  198 ELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVD-TGRALVVAAEYSREESVKFLLQHQAG--GGTWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIG-HAVGAASSRMKPTTAGPTLKRMSTVLRTTVGKRGVVLRAVYRAAEE 428          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 4.180e-37
Identity = 114/267 (42.70%), Postives = 147/267 (55.06%), Query Frame = 1
Query:  619 KADPLLQRTNSSSGMTSVXXXXXXXXXXXXXXXELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAH-HGGKNGSGFRYTNHRSKTGRTALFNAIIFSRPSPRIVRLLVDAGADATTTVRVLDASGGL-TNTTPLGLTADLLRKNE--MGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSVPLVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            KADPLL      SG T +               EL++Q+GI GCGG+SGG  AL+ AA+    +IM +LT AGV+D TG+AL+VAA +  E  +K L+      K      Y N R + G T L   I   RP  R+VRLLV+AGAD T+ V V +  GG   + TPLGLT + +R     +G   AS E+ H+LEAIRRLLLR+EAVHA SWLW S  +++    A  +    A S  +   + V R RA    V L  L RYS K
Sbjct:  171 KADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVD-TGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYRP--RVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSK 434          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 5.820e-36
Identity = 104/239 (43.51%), Postives = 139/239 (58.16%), Query Frame = 1
Query:  718 ELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNGSGFRYTNHRSKTGRTALFNAIIF-----SRPSPRIVRLLVDAGADATTTVRVLDASGG-LTNTTPLGLTADLLRKNEMGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGV---HTAEKSVTKKAPSVPLVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            EL+Q++GI GCGG S G  AL +A E  R   M +LT AGV+D TG AL ++A    EA+VK L+ +H    G G  Y N R + G T L ++I           PR+ RLLV+AGAD TT +R  ++ G  L + TPL LT  +L+  ++ G   S++R  RLE IRRLLL++EAVHA SWLW S     G    + AE +    A +  L  +LP+LR RA + GVV   L R+ RK
Sbjct:  187 ELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVD-TGQALTISAGLGREASVKYLLQNHAKHYGPG-AYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRK 423          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.420e-34
Identity = 95/201 (47.26%), Postives = 124/201 (61.69%), Query Frame = 1
Query:  808 DIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNG-SGFRYTNHRSKTGRTALFNAIIF-SRPSPRIVRLLVDAGADATTTVRVLDASGGLT-NTTPLGLTADLLRKNEMGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSVPLVSMLPVLRLRASKNGVVLVPLFRYS 1401
            DIM +LTGAGV D+ G  L+  A    EA+V+ L+     ++  S   Y N    +G T L  +I + S  +PRIVRLLVDAGAD T+TVRV + +GG+  N TPL +T  LLR+  + GK A+EE+ HRL+AIRRLLLR++AVHA SWLW S DA   VH  E+S   +    PL   LP+L+ RA    V +  L R S
Sbjct:    6 DIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPS-DAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLRSS 205          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 3.080e-33
Identity = 112/272 (41.18%), Postives = 140/272 (51.47%), Query Frame = 1
Query:  619 KADPLLQRTNSSSGMTSVXXXXXXXXXXXXXXXELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNGSGFRYTNH-RSKTGRTALFNAI---IFSRPSPRIVRLLVDAGADATTTVRVLDASGGLTNT-TPLGLTADLLRKNEMGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVH---TAEKSVTKKAPSVP-LVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            KA+PLL R N +     +               EL+Q+ GI GCGG +GG  AL+LAA     D+M  LT AGV+D TGIAL+ A  F H   VK L+    G       Y +  R   GRT L   I   +    SP++VRLLVDAGAD T+ VR     G L    TPL L  + LR      K   +E   RLE IRRLLLR+EAVHA SWLW +G   +G+    TA       + + P L ++LP+LR RA   G V   L RY+ K
Sbjct:  170 KANPLLTRVNLA--WQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVD-TGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVK 438          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.560e-33
Identity = 109/271 (40.22%), Postives = 150/271 (55.35%), Query Frame = 1
Query:  619 KADPLLQRTNSSSGMTSVXXXXXXXXXXXXXXXELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAH-HGGKNGSGFRYTNHRSKTGRTALFNAIIFSRPSPRIVRLLVDAGADATTTVRVLDASGGLT-NTTPLGLTADLLRKNEMGGKDASE---ERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAE---KSVTKKAPSVPLVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            KADPLL   + S     +               EL++Q+GI GCGG+SGG +AL+ AA  +R DIM +LT AGV+D TG+AL+VAA +  EA +K L+    G K+     Y N  +  G T+L + I   R  PR+V+LLV+AGAD T+ V + +  G    + TPLGLT  LL     GG+ A     E +++LE IRRLLLR EAVHA SWLW S   ++   TA+   ++      + P + ++   R R  K   +L  L RYS K
Sbjct:  171 KADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVD-TGLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGI--QRCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLL-----GGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKG--LLAALLRYSSK 431          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.100e-33
Identity = 108/272 (39.71%), Postives = 146/272 (53.68%), Query Frame = 1
Query:  619 KADPLLQRTNSSSGMTSVXXXXXXXXXXXXXXXELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNGSGFRYTNH-RSKTGRTALFNAIIFSRP---SPRIVRLLVDAGADATTTVRV--LDASGGLTNTTPLGLTADLLRKNEMGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSV---PLVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            KA+PLL  +++  G++ V               E+++Q+GI GCGG SGG  AL+ AA+    + M VL  AG +  TG ALI+AAE     AVK L+     +      Y N  R   GRT +  A+        SP+IVRLLVDAGA+ T  V V  +      T+ TPL  T  LLR+  + G+ A++E+  RL+  R LL R EAVHA SWLW SG+       A  + T+ A +    PL +M P+LR +    GV+L  LFRYSRK
Sbjct:  168 KANPLLC-SHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRR---RQADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.440e-32
Identity = 106/268 (39.55%), Postives = 143/268 (53.36%), Query Frame = 1
Query:  619 KADPLLQRTNSSSGMTSVXXXXXXXXXXXXXXXELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNGSGFRYTN-HRSKTGRTALFNAIIFSRP---SPRIVRLLVDAGADATTTVRV-LDASGGLTNTTPLGLTADLLRKNEMGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSVPLVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            KA+PLL  ++ SSG + V               EL+++ GI  CGG SGG  AL++AA   + DIM +L  AGV+D  G+AL+ A     EAAV  L+     +  +   Y N  R   G TAL  +   ++    +PRI R LVDAGAD T+ V++    S    N TPL    D   +   G   A++E+  RLEA RR+LLR+ AVHA SW+W S DA L    A    T K     L ++LPVLR RA +  ++   LFRYS+K
Sbjct:  141 KANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS--YVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPS-DAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405          
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.110e-32
Identity = 99/260 (38.08%), Postives = 129/260 (49.62%), Query Frame = 1
Query:  628 PLLQRTNSSSGMTSVXXXXXXXXXXXXXXXELVQQLGIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFCHEAAVKCLVAHHGGKNGSGFRYTNHRSKTGRTALFNAIIFSRPSPRIVRLLVDAGADATTTVRVLDASGGLTNTTPLGLTADLLRKNEMGGKDASEERRHRLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSVPLVSMLPVLRLRASKNGVVLVPLFRYSRK 1407
            PLL  T  SSG T V               ELVQ+ GI GC GAS G  AL  AA     D+M +L  AGV+D TG AL+       E A+K L+   G         +  R   G T L +A+     SPR+VRLLVDAGADAT  VRV D  G  T  TPL      L +  +    A+ ++   L A RRLLL++E VHA SWLW            +++ T+     PL S LP++  R+++ G  L  +FR ++K
Sbjct:  170 PLLP-TRMSSGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVD-TGNALVATVFLGRERALKFLLEQKGEGTARTTYASTPRDGRGHTPLLSAVTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFRLAKK 427          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4888.12808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT11_ECTSI2.150e-4044.24EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1U9_ECTSI3.600e-3844.26EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE4.180e-3742.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI5.820e-3643.51EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LSC5_ECTSI2.420e-3447.26EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVK3_ECTSI3.080e-3341.18EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KQV0_9PHAE3.560e-3340.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1H7_ECTSI5.100e-3339.71EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FVU3_ECTSI1.440e-3239.55EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LL76_ECTSI2.110e-3238.08EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4888contigL-elsbetiae_contig4888:10419..12681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue3.8e-38
Seed eggNOG ortholog2880.D7FT11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1861
Cds size1281
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4888.12808.1prot_L-elsbetiae_contig4888.12808.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4888 10864..12546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.566058-UTR-L-elsbetiae_contig4888:10418..108631622816482.566058-UTR-L-elsbetiae_contig4888:10418..10863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4888 10419..10863 -
1691683591.786771-UTR-L-elsbetiae_contig4888:10418..108631691683591.786771-UTR-L-elsbetiae_contig4888:10418..10863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4888 10419..10863 -
1622816482.6097014-UTR-L-elsbetiae_contig4888:12546..126811622816482.6097014-UTR-L-elsbetiae_contig4888:12546..12681Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4888 12547..12681 -
1691683591.821986-UTR-L-elsbetiae_contig4888:12546..126811691683591.821986-UTR-L-elsbetiae_contig4888:12546..12681Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4888 12547..12681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.5798905-CDS-L-elsbetiae_contig4888:10863..108851622816482.5798905-CDS-L-elsbetiae_contig4888:10863..10885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4888 10864..10885 -
1691683591.7995434-CDS-L-elsbetiae_contig4888:10863..108851691683591.7995434-CDS-L-elsbetiae_contig4888:10863..10885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4888 10864..10885 -
1622816482.59361-CDS-L-elsbetiae_contig4888:11287..125461622816482.59361-CDS-L-elsbetiae_contig4888:11287..12546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4888 11288..12546 -
1691683591.810785-CDS-L-elsbetiae_contig4888:11287..125461691683591.810785-CDS-L-elsbetiae_contig4888:11287..12546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4888 11288..12546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4888.12808.1

>prot_L-elsbetiae_contig4888.12808.1 ID=prot_L-elsbetiae_contig4888.12808.1|Name=mRNA_L-elsbetiae_contig4888.12808.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=427bp
MPPPRCPPNQLHAAAGRGNERMVLAQLAKGCHIDQGTPTGCTALIIAAGE
GHPRVVRALLKKGANFWVTADGGGSALHAASHQGHLAVAIELVKAGAALE
QKDSRGKTPLHVATIEGRWGVMRMLIEAGANADSREVEGSTPLYSAAWQG
HMDAIKVLLRAKADPLLQRTNSSSGMTSVPLDAAALNGHCEAVKELVQQL
GIMGCGGASGGAHALKLAAEINRADIMGVLTGAGVIDSTGIALIVAAEFC
HEAAVKCLVAHHGGKNGSGFRYTNHRSKTGRTALFNAIIFSRPSPRIVRL
LVDAGADATTTVRVLDASGGLTNTTPLGLTADLLRKNEMGGKDASEERRH
RLEAIRRLLLRLEAVHARSWLWWSGDASLGVHTAEKSVTKKAPSVPLVSM
LPVLRLRASKNGVVLVPLFRYSRKRR*
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mRNA from alignment at L-elsbetiae_contig4888:10419..12681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4888.12808.1 ID=mRNA_L-elsbetiae_contig4888.12808.1|Name=mRNA_L-elsbetiae_contig4888.12808.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2263bp|location=Sequence derived from alignment at L-elsbetiae_contig4888:10419..12681- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCTGTGGCACAGGCACGTTCGTTGTAAATAGGAGGGCTATCTTATCT ATTGTGTAGCGCAAGCACTGGGGGAAATACCTTCTGCACCTCGGCCACTC GTTGAGTCTGTAATCTGCAACCCTGCGCAGTCGAGATGCCCCCGCCTCGA TGTCCCCCTAATCAGCTACACGCTGCCGCCGGACGCGGGAACGAGCGCAT GGTGCTAGCCCAGCTAGCGAAGGGGTGTCACATTGACCAAGGCACTCCAA CTGGGTGCACTGCCTTGATTATTGCCGCCGGCGAAGGTCACCCGCGCGTT GTCAGGGCCCTCCTCAAAAAGGGAGCCAACTTCTGGGTGACGGCAGACGG CGGGGGCAGCGCTCTGCACGCCGCAAGCCATCAGGGACACCTTGCCGTGG CCATCGAACTGGTCAAGGCTGGTGCAGCACTAGAACAAAAAGACTCTCGA GGGAAGACACCGCTTCACGTGGCCACGATCGAAGGACGCTGGGGGGTGAT GAGGATGCTGATCGAGGCAGGCGCGAACGCTGATAGTCGCGAGGTCGAAG GATCGACCCCGCTGTACAGCGCGGCGTGGCAGGGGCATATGGACGCGATC AAGGTGCTCCTTCGAGCTAAAGCTGACCCTCTCCTGCAGAGAACGAACTC CTCATCGGGGATGACTTCGGTTCCTCTGGACGCGGCTGCGCTCAACGGAC ACTGCGAGGCGGTTAAAGAGCTGGTGCAGCAGCTAGGGATCATGGGATGC GGTGGCGCAAGCGGCGGTGCGCATGCTCTCAAATTGGCAGCAGAGATCAA CCGTGCAGACATCATGGGTGTGTTAACAGGCGCCGGAGTGATAGATAGTA CAGGCATAGCCCTCATCGTCGCCGCCGAATTTTGTCACGAGGCCGCTGTC AAGTGCCTGGTGGCACATCACGGGGGTAAAAACGGCAGTGGCTTTCGGTA CACTAACCACCGCAGCAAGACCGGCAGAACGGCGTTGTTCAACGCCATCA TCTTCAGCCGTCCGTCTCCTAGAATTGTGCGATTGCTCGTAGACGCGGGA GCAGACGCTACGACGACCGTTCGAGTTCTGGATGCCAGCGGAGGGCTAAC CAACACGACGCCGCTAGGGCTCACGGCCGACTTGCTCCGCAAGAATGAGA TGGGGGGAAAGGACGCCAGCGAGGAGCGGCGGCACAGGCTCGAAGCGATC CGCCGCCTGCTATTGAGGCTGGAGGCCGTTCATGCGCGTTCTTGGCTGTG GTGGTCTGGCGACGCCTCCCTTGGCGTCCACACTGCGGAAAAAAGCGTAA CAAAGAAGGCGCCTTCGGTGCCGCTGGTGTCGATGTTGCCGGTCCTGAGG CTACGGGCAAGCAAGAACGGTGTGGTCTTAGTGCCCCTGTTCAGGTGGGT ATCGGCGTGATGCTTCGATCGCCGTTTGAAGCATTATTTATTCTGCATAC TGCCGTCGGCGAGGTGGCGGCTTGCCGTTCCTTCTGGGCGCGTACCGCGG CTGCACAGACCGTACAGACCAGTAACAAGGGCTTCGCGTGTGGCAGAGCT CTCCTGCCCTACTTCTACTAACATGTTTTTATTTTTAGTGAGCGACGCCC TTACTCCATCCTGCAACTCTGGGAACAGACTTAAGTTTCCGCATATCTTT ATCGTCGCACACTTGGCGAGCTCAGAACCCCGTACGGTGCCCACCCTATC CGCTGCCCCGGTGGTGACAACACTTCGTTGCCTTCCTTGCGTGCCTGTCT CGTTGCATCTCTTACCTTGCTTTGCCCCCCCCTTGTGATTTTGCAGGTAT TCGAGGAAGCGCCGATGATAATCTCCCTGCGAGCGTGTGTAGACCGTCAC ACGACATGGAGCATGGGGCGAAGCGGAGAGGCATGGTGTACTACATAATT TGAGCGGCTGTTAAACCCGTTGTTTGATGAGTGCCTGAAGAGCTGAGGAG GCGGGCATGACGGATTCATATTGTAGAGGAGGATGGTCCAGGGTATGTCG AGGTCGAGCGGCGGTTTTCAGAGGTTAGCTCTTGGTTCTACGTTGTCTTC CGATGTCAACATTGCTAGCCGGGTAGAGTTGTTTTTCCCCATTTATTCGC TCATTGGCAGCAGCATAATGTACCAGTAGTGGTCTTCGTGCGTTTGCAAG TTGGAGGATTGTCCCAAAACCAAGTTTTCCGTAAATGCTCGCCGTCTGGT CGGGCAACTCACACTTCGCCTTAACTGCTGTTGTAAGGAAATCGATTTCT TCTTGGTGGCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4888:10419..12681-

>mRNA_L-elsbetiae_contig4888.12808.1 ID=mRNA_L-elsbetiae_contig4888.12808.1|Name=mRNA_L-elsbetiae_contig4888.12808.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2562bp|location=Sequence derived from alignment at L-elsbetiae_contig4888:10419..12681- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCGCCTCGATGTCCCCCTAATCAGCTACACGCTGCCGCCGGACG
CGGGAACGAGCGCATGGTGCTAGCCCAGCTAGCGAAGGGGTGTCACATTG
ACCAAGGCACTCCAACTGGGTGCACTGCCTTGATTATTGCCGCCGGCGAA
GGTCACCCGCGCGTTGTCAGGGCCCTCCTCAAAAAGGGAGCCAACTTCTG
GGTGACGGCAGACGGCGGGGGCAGCGCTCTGCACGCCGCAAGCCATCAGG
GACACCTTGCCGTGGCCATCGAACTGGTCAAGGCTGGTGCAGCACTAGAA
CAAAAAGACTCTCGAGGGAAGACACCGCTTCACGTGGCCACGATCGAAGG
ACGCTGGGGGGTGATGAGGATGCTGATCGAGGCAGGCGCGAACGCTGATA
GTCGCGAGGTCGAAGGATCGACCCCGCTGTACAGCGCGGCGTGGCAGGGG
CATATGGACGCGATCAAGGTGCTCCTTCGAGCTAAAGCTGACCCTCTCCT
GCAGAGAACGAACTCCTCATCGGGGATGACTTCGGTTCCTCTGGACGCGG
CTGCGCTCAACGGACACTGCGAGGCGGTTAAAGAGCTGGTGCAGCAGCTA
GGGATCATGGGATGCGGTGGCGCAAGCGGCGGTGCGCATGCTCTCAAATT
GGCAGCAGAGATCAACCGTGCAGACATCATGGGTGTGTTAACAGGCGCCG
GAGTGATAGATAGTACAGGCATAGCCCTCATCGTCGCCGCCGAATTTTGT
CACGAGGCCGCTGTCAAGTGCCTGGTGGCACATCACGGGGGTAAAAACGG
CAGTGGCTTTCGGTACACTAACCACCGCAGCAAGACCGGCAGAACGGCGT
TGTTCAACGCCATCATCTTCAGCCGTCCGTCTCCTAGAATTGTGCGATTG
CTCGTAGACGCGGGAGCAGACGCTACGACGACCGTTCGAGTTCTGGATGC
CAGCGGAGGGCTAACCAACACGACGCCGCTAGGGCTCACGGCCGACTTGC
TCCGCAAGAATGAGATGGGGGGAAAGGACGCCAGCGAGGAGCGGCGGCAC
AGGCTCGAAGCGATCCGCCGCCTGCTATTGAGGCTGGAGGCCGTTCATGC
GCGTTCTTGGCTGTGGTGGTCTGGCGACGCCTCCCTTGGCGTCCACACTG
CGGAAAAAAGCGTAACAAAGAAGGCGCCTTCGGTGCCGCTGGTGTCGATG
TTGCCGGTCCTGAGGCTACGGGCAAGCAAGAACGGTGTGGTCTTAGTGCC
CCTGTTCAGATGCCCCCGCCTCGATGTCCCCCTAATCAGCTACACGCTGC
CGCCGGACGCGGGAACGAGCGCATGGTGCTAGCCCAGCTAGCGAAGGGGT
GTCACATTGACCAAGGCACTCCAACTGGGTGCACTGCCTTGATTATTGCC
GCCGGCGAAGGTCACCCGCGCGTTGTCAGGGCCCTCCTCAAAAAGGGAGC
CAACTTCTGGGTGACGGCAGACGGCGGGGGCAGCGCTCTGCACGCCGCAA
GCCATCAGGGACACCTTGCCGTGGCCATCGAACTGGTCAAGGCTGGTGCA
GCACTAGAACAAAAAGACTCTCGAGGGAAGACACCGCTTCACGTGGCCAC
GATCGAAGGACGCTGGGGGGTGATGAGGATGCTGATCGAGGCAGGCGCGA
ACGCTGATAGTCGCGAGGTCGAAGGATCGACCCCGCTGTACAGCGCGGCG
TGGCAGGGGCATATGGACGCGATCAAGGTGCTCCTTCGAGCTAAAGCTGA
CCCTCTCCTGCAGAGAACGAACTCCTCATCGGGGATGACTTCGGTTCCTC
TGGACGCGGCTGCGCTCAACGGACACTGCGAGGCGGTTAAAGAGCTGGTG
CAGCAGCTAGGGATCATGGGATGCGGTGGCGCAAGCGGCGGTGCGCATGC
TCTCAAATTGGCAGCAGAGATCAACCGTGCAGACATCATGGGTGTGTTAA
CAGGCGCCGGAGTGATAGATAGTACAGGCATAGCCCTCATCGTCGCCGCC
GAATTTTGTCACGAGGCCGCTGTCAAGTGCCTGGTGGCACATCACGGGGG
TAAAAACGGCAGTGGCTTTCGGTACACTAACCACCGCAGCAAGACCGGCA
GAACGGCGTTGTTCAACGCCATCATCTTCAGCCGTCCGTCTCCTAGAATT
GTGCGATTGCTCGTAGACGCGGGAGCAGACGCTACGACGACCGTTCGAGT
TCTGGATGCCAGCGGAGGGCTAACCAACACGACGCCGCTAGGGCTCACGG
CCGACTTGCTCCGCAAGAATGAGATGGGGGGAAAGGACGCCAGCGAGGAG
CGGCGGCACAGGCTCGAAGCGATCCGCCGCCTGCTATTGAGGCTGGAGGC
CGTTCATGCGCGTTCTTGGCTGTGGTGGTCTGGCGACGCCTCCCTTGGCG
TCCACACTGCGGAAAAAAGCGTAACAAAGAAGGCGCCTTCGGTGCCGCTG
GTGTCGATGTTGCCGGTCCTGAGGCTACGGGCAAGCAAGAACGGTGTGGT
CTTAGTGCCCCTGTTCAGGTATTCGAGGAAGCGCCGATGAGTATTCGAGG
AAGCGCCGATGA
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