mRNA_L-elsbetiae_contig2143.6550.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2143.6550.1
Unique NamemRNA_L-elsbetiae_contig2143.6550.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2143.6550.1 vs. uniprot
Match: A0A6H5KW75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW75_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.060e-7
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  562 STPKKSKSPRHRPRSPRPVSKEYDLWTDNTL-DSSDFSFF 678
            S+  +SKSPRHRPRSPRP +KEYDLWTDNTL   SDFSFF
Sbjct:  959 SSKSRSKSPRHRPRSPRPSNKEYDLWTDNTLVGDSDFSFF 998
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2143.6550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KW75_9PHAE1.060e-777.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2143contigL-elsbetiae_contig2143:16490..19290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003350.1
Exons3
Model size813
Cds size681
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2143.6550.1prot_L-elsbetiae_contig2143.6550.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2143 16490..19158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815875.9483473-CDS-L-elsbetiae_contig2143:16489..165971622815875.9483473-CDS-L-elsbetiae_contig2143:16489..16597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2143 16490..16597 +
1691683161.751407-CDS-L-elsbetiae_contig2143:16489..165971691683161.751407-CDS-L-elsbetiae_contig2143:16489..16597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2143 16490..16597 +
1622815875.9608283-CDS-L-elsbetiae_contig2143:17353..175091622815875.9608283-CDS-L-elsbetiae_contig2143:17353..17509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2143 17354..17509 +
1691683161.7618036-CDS-L-elsbetiae_contig2143:17353..175091691683161.7618036-CDS-L-elsbetiae_contig2143:17353..17509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2143 17354..17509 +
1622815875.9729884-CDS-L-elsbetiae_contig2143:18741..191581622815875.9729884-CDS-L-elsbetiae_contig2143:18741..19158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2143 18742..19158 +
1691683161.7734253-CDS-L-elsbetiae_contig2143:18741..191581691683161.7734253-CDS-L-elsbetiae_contig2143:18741..19158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2143 18742..19158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.011363-UTR-L-elsbetiae_contig2143:19158..192901622815876.011363-UTR-L-elsbetiae_contig2143:19158..19290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2143 19159..19290 +
1691683161.7882712-UTR-L-elsbetiae_contig2143:19158..192901691683161.7882712-UTR-L-elsbetiae_contig2143:19158..19290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2143 19159..19290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2143.6550.1

>prot_L-elsbetiae_contig2143.6550.1 ID=prot_L-elsbetiae_contig2143.6550.1|Name=mRNA_L-elsbetiae_contig2143.6550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
GSFVTPEVRPASRSSAPVARTGGGRSRQHREPDSREVNIGVEPATYRSRS
DRQPSGPARRSKKPSRSLSQDPPARSQQASESTAEAAGSRKKSASSGRKS
GGGGSGGDSGRPKKKDKSSSSSSGSGYSSSSGRDRDRGRRDGGGGDGDDR
RQQRHRSFDGGGRGGGGGGGRGGGGGGGAPSGGRKGGSTPKKSKSPRHRP
RSPRPVSKEYDLWTDNTLDSSDFSFF*
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mRNA from alignment at L-elsbetiae_contig2143:16490..19290+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2143.6550.1 ID=mRNA_L-elsbetiae_contig2143.6550.1|Name=mRNA_L-elsbetiae_contig2143.6550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2801bp|location=Sequence derived from alignment at L-elsbetiae_contig2143:16490..19290+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCTTCGTTACGCCGGAGGTCCGCCCTGCCTCTCGCTCGTCGGCCCC
TGTCGCTAGGACGGGAGGCGGTAGGTCGCGGCAGCACCGGGAGCCGGATA
GCCGGGAGGTGAGTGTGAGCGTGGCGCGGGAAGGTGTGGGGGGTCTTGGT
CTCGCTGGCGGGGGGCGCGCGCAGGTGTACCGTCTTGTTCTTCCCGACTG
CCGCGACCCCGTGGCCGTCGGAAGAGCGGGCGGGGCATGTAGCGCTCGAG
GTGCCGGGCGGTGTAGGGGGGCCTGTGGCCTGTGGCTCGAACCAAGGGGC
ATGCATACCCGGGCCGTGGAAGAGCGTGTTAGCTTCCGTGCCGCCAGGAG
GGCGACAGCTAGTGATGGCGGTCGGCGGTGCGGTGGACGGGGCGTAACCA
GACGATCGTTCTCTCTCTCTCGCGCGCGCGGCGTACGTTGCAAGCATGTT
GAGCTTGGCGAGTAGAAGCCCCATTTCTGTGTAGGCGTGGACACGTGACA
CGTGCTGTCCGAGGGTGTCCCGACGTGTGTGCCGTCTGGGGGATATTGAT
GCCGGGCGGCAAGCGAGATCGCTGGGAAGCTCTTTGTGCCTCCTTCGCTT
TCTCTCTCTCTCCGAAGAGAGGCGCACTCACTTCCTTGGCCCTGCTGGCC
CTGCTTTCGATGTTAATATTTCTAACCCGAGCATTGCAAACTCTAGATAC
GCCACAGACGAGCTTCCTGCCTCCTTGATCAGAGAAACGTGGTACGTAGC
TGTCGCTGACAACAACCACCCGCCACCACTTACCACCACCACCACGGCCA
TTAACACCAAATGCCATCCCTGTGTATTTACCTCTTTTCTATCCGGGGGG
GGGGCTCCGTGAAGGTGAACATTGGTGTCGAGCCTGCCACTTACCGGAGC
CGCTCTGATCGCCAGCCCTCGGGTCCAGCCCGGCGGTCGAAGAAGCCGAG
CCGCTCTCTGTCCCAAGACCCTCCCGCGCGCAGCCAACAAGCCTCGGAGA
GCACGGCGGAGGCTGCCGGGGTGAGTTTGAGAGCGAGCATGGAGCATGGC
ACCCGGCTGGTGTTCGTTTTACTTGTTTTTTGAGAGAGCAACCCCTTTGT
GAAGATACTTTGTATGTAGATGCACAGTCTATGTATCGCACGACCCGCGA
GTTCTGAGATGTACGATGGCAGACAAAGGGCGTCGATGTCGGGGTCGGGG
GGGGGGGGGGCGGAGGCGGGCGAGGCTAGGTAGCACATGCGCGGGGGTCA
GCCGTGTCCCAGGTGTACATATCGCAGTCGCCGAAAGGTTGCCTCCAGCT
TTTGGCTTGGGATGTTGGCTCCACGCCGTGGGCTCGGTCGGGGTGGCCTG
TGCGCCCGGTCGGTGAAAAGAAGGCATGCCTCTCCACCTAGCGCTAGACC
GCCAAAATGGCATTCATTGAGATGGTCCGGGGACGCTTTTTTTTACACAC
ATACATACATGAGAAGTAGTACACGTGCACGGAGCGTGATTGTACATATA
TCTATGTAGTTTTTTTTTGTTCTTTACTCCTCTTCTCTTCCGCGGCAAGT
CTTGATCTTCCCCAGCGATTCCGTTGGATAGCCCGCTACTTGTTTGTACA
CTAGAAGTGTTTGCCTTGTTTTATTTGTTTGTTCGTTCGTTTCTTAAAAC
CTAACTAAGCGTCAGCAGCGATTACTACTTTATTTTATTTTTTTGGCAAA
AAGTAATGGTTCCGTCCGACGCCGCGGCATGCCAGCCCAAGGACCTACAA
CCCCCCACAACCTCCTAATTGCCCGTTCGGTGATAGGGCTTGGCCCACTA
TGTACTGTGCGCGTTTTTTTCTTATTGTAGATATGCTCCTACTTAAAAAA
AAAAACATATGCTCGTTTAAAACTAACTCCCAATTATATGCTCATTAGGC
TCCGAAAAAAGGCGAATTATGCTCAAAATGTGCTTAGAGGTGGAAATTTC
GCTCACTTATGCTCGTTGTTTACTTGAGCTTTTTTTGCTTACATGTTATG
AAAAGGCATAGGAGGTCCAAGCCCTATTCGGCGAGGGCGGCAGCAGATGA
ACGCCTCAAGAGATGCCGGCACAAACAAACTACATAGTTTAATGGTCTCG
AGGATCAATGAATAGGCGGACACCGACCGAAAATGATGACATCGGACCAT
TCTAAAAAGTAGACAGAGGATTCTAAATAATCGTGTGCTCACGCCCTCTG
ACTTTCACACGCGCACGCCTATTGTATCGCCACGACTTCCGCCTACCATC
AGAGCCGCAAGAAGAGTGCTTCGTCGGGGAGGAAAAGCGGCGGCGGCGGC
AGCGGCGGCGACAGCGGCAGGCCCAAAAAGAAGGACAAGTCGTCATCTTC
TTCGTCAGGCTCTGGCTACAGCAGCAGCAGCGGCCGCGACCGCGACCGCG
GCAGGAGGGACGGCGGCGGCGGCGACGGCGACGACCGCCGCCAGCAGCGC
CACCGTTCCTTTGACGGTGGCGGCAGAGGAGGAGGAGGAGGGGGAGGGAG
GGGAGGAGGAGGAGGAGGAGGGGCGCCGTCGGGGGGTCGAAAGGGGGGCT
CCACGCCCAAAAAGAGCAAGTCGCCTCGCCACCGGCCCCGGTCTCCGCGG
CCGGTCAGCAAGGAGTACGACCTCTGGACAGACAACACGCTCGATTCCTC
GGACTTCAGCTTCTTCTGAGCTAAAAAAGGAACTAGAAAAGGAGCTACCG
TACACATCTAGCATGTAGGTACGCAGACAGACGCACTTTTTTTTGCTCTG
CTCGCCTGAGTGAGTACGTGGGTCGGGCGGTCGCCCCGCGGCGCGCGGAG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2143:16490..19290+

>mRNA_L-elsbetiae_contig2143.6550.1 ID=mRNA_L-elsbetiae_contig2143.6550.1|Name=mRNA_L-elsbetiae_contig2143.6550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig2143:16490..19290+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCTTCGTTACGCCGGAGGTCCGCCCTGCCTCTCGCTCGTCGGCCCC
TGTCGCTAGGACGGGAGGCGGTAGGTCGCGGCAGCACCGGGAGCCGGATA
GCCGGGAGGGCAGCTTCGTTACGCCGGAGGTCCGCCCTGCCTCTCGCTCG
TCGGCCCCTGTCGCTAGGACGGGAGGCGGTAGGTCGCGGCAGCACCGGGA
GCCGGATAGCCGGGAGGTGAACATTGGTGTCGAGCCTGCCACTTACCGGA
GCCGCTCTGATCGCCAGCCCTCGGGTCCAGCCCGGCGGTCGAAGAAGCCG
AGCCGCTCTCTGTCCCAAGACCCTCCCGCGCGCAGCCAACAAGCCTCGGA
GAGCACGGCGGAGGCTGCCGGGGTGAACATTGGTGTCGAGCCTGCCACTT
ACCGGAGCCGCTCTGATCGCCAGCCCTCGGGTCCAGCCCGGCGGTCGAAG
AAGCCGAGCCGCTCTCTGTCCCAAGACCCTCCCGCGCGCAGCCAACAAGC
CTCGGAGAGCACGGCGGAGGCTGCCGGGAGCCGCAAGAAGAGTGCTTCGT
CGGGGAGGAAAAGCGGCGGCGGCGGCAGCGGCGGCGACAGCGGCAGGCCC
AAAAAGAAGGACAAGTCGTCATCTTCTTCGTCAGGCTCTGGCTACAGCAG
CAGCAGCGGCCGCGACCGCGACCGCGGCAGGAGGGACGGCGGCGGCGGCG
ACGGCGACGACCGCCGCCAGCAGCGCCACCGTTCCTTTGACGGTGGCGGC
AGAGGAGGAGGAGGAGGGGGAGGGAGGGGAGGAGGAGGAGGAGGAGGGGC
GCCGTCGGGGGGTCGAAAGGGGGGCTCCACGCCCAAAAAGAGCAAGTCGC
CTCGCCACCGGCCCCGGTCTCCGCGGCCGGTCAGCAAGGAGTACGACCTC
TGGACAGACAACACGCTCGATTCCTCGGACTTCAGCTTCTTCTGAAGCCG
CAAGAAGAGTGCTTCGTCGGGGAGGAAAAGCGGCGGCGGCGGCAGCGGCG
GCGACAGCGGCAGGCCCAAAAAGAAGGACAAGTCGTCATCTTCTTCGTCA
GGCTCTGGCTACAGCAGCAGCAGCGGCCGCGACCGCGACCGCGGCAGGAG
GGACGGCGGCGGCGGCGACGGCGACGACCGCCGCCAGCAGCGCCACCGTT
CCTTTGACGGTGGCGGCAGAGGAGGAGGAGGAGGGGGAGGGAGGGGAGGA
GGAGGAGGAGGAGGGGCGCCGTCGGGGGGTCGAAAGGGGGGCTCCACGCC
CAAAAAGAGCAAGTCGCCTCGCCACCGGCCCCGGTCTCCGCGGCCGGTCA
GCAAGGAGTACGACCTCTGGACAGACAACACGCTCGATTCCTCGGACTTC
AGCTTCTTCTGA
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