mRNA_L-elsbetiae_contig2142.6547.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2142.6547.1
Unique NamemRNA_L-elsbetiae_contig2142.6547.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: D7FWP1_ECTSI (HIT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP1_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.950e-51
Identity = 77/105 (73.33%), Postives = 90/105 (85.71%), Query Frame = 1
Query:    1 DILAKGVVWNARGEMQSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLKCDASNMQFSFHIPPWNSI 315
            DI++KGVVWNARGEMQSCLFCDF   +KEKE+L+ED+LV AF P KPAAKQH+LVVPK+HISTVGDL   D  +L+RM+EVA +LLKCDAS  Q SFHIPPWNS+
Sbjct:   33 DIVSKGVVWNARGEMQSCLFCDFANHTKEKELLYEDDLVIAFSPLKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLKCDASQTQLSFHIPPWNSV 137          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: U9TE69_RHIID (HIT domain-containing protein n=4 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9TE69_RHIID)

HSP 1 Score: 80.1 bits (196), Expect = 5.980e-17
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   46 QSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLK---CDASNMQFSFHIPPWNSI 315
            Q C+FCD T    +K+I++ED  + AF    PAAK HLL++P+ HI  V  LTP D  +L+ M +   QLL       S  +  FH+PP+NS+
Sbjct:   14 QDCVFCDLT----DKKIVYEDERIVAFHDISPAAKLHLLIIPRNHIDNVDSLTPNDAPLLKHMIDTGNQLLSESGYQLSERRVGFHVPPYNSV 102          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: UPI00077B98B9 (histidine triad nucleotide-binding protein 3 isoform X1 n=2 Tax=Tetranychus urticae TaxID=32264 RepID=UPI00077B98B9)

HSP 1 Score: 79.3 bits (194), Expect = 2.230e-16
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   16 GVVWNARGEMQSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLK---CDASNMQFSFHIPPWNSI 315
            G+  N    + +C+FC    R  E  I +ED+   AF    PA+  H+L++PK+HI  +  LT +D  ++ERM+++A  L++    D+++ +  FH PP+NSI
Sbjct:   27 GMARNINPVINNCIFCSIVSRKAEATIKYEDDAYLAFKDIYPASDTHILIIPKRHIKDIKSLTTDDLPIIERMKDIAINLIRENALDSNDTRLGFHKPPFNSI 129          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: K5WFJ8_PHACS (HIT domain-containing protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5WFJ8_PHACS)

HSP 1 Score: 79.0 bits (193), Expect = 3.900e-16
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   52 CLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLL---KCDASNMQFSFHIPPWNSI 315
            C+FCD + R K  ++++ED     F    PAAK HLLV+PK+H+ +V  L P D  +++RM E+   LL      A++    FHIPP+NS+
Sbjct:   35 CVFCDIS-REKGFDVVWEDETFIVFNDHSPAAKHHLLVIPKRHVESVKTLKPSDAPMIQRMSEIGHSLLGELSVPAASRMMGFHIPPFNSV 124          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: A0A067R9E6_ZOONE (Histidine triad nucleotide-binding protein 3 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067R9E6_ZOONE)

HSP 1 Score: 77.0 bits (188), Expect = 7.870e-16
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   49 SCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLK---CDASNMQFSFHIPPWNSI 315
            +C+FC      ++ EIL++D+    F   KPAAK H L+V ++HI     LT E   V+E++ E+A+Q+L     D S+++F FH PP+NSI
Sbjct:    7 NCVFCRICNGKEQSEILYKDDEYVVFPDIKPAAKHHYLIVTREHIQNAKQLTTEHRHVVEKLIEIAKQVLTEEGADLSDVRFGFHWPPFNSI 98          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: K3XBI6_GLOUD (HIT domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBI6_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 8.970e-16
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   13 KGVVWNARGEMQSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLKC-----------DAS------NMQFSFHIPPWNSI 315
            KGV +   G +  C FCD   + K++E L+ED+++A F P  P  + H+LVVP+ HI  V  LT +  Q+L RM++VAE +L+            ++S      + +F+FH PP+NSI
Sbjct:  146 KGVKYGRDGAVVCCRFCDILHK-KDEEFLYEDDMIAVFRPLSPVVESHILVVPRCHIRNVNMLTQDHVQLLSRMKQVAETVLRAMPPSXXXXXKPESSAVSSDVDYKFAFHTPPFNSI 262          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: A0A662WLK2_9STRA (HIT domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLK2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.070e-15
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   13 KGVVWNARGEMQSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLK--------------------CDA-SNMQFSFHIPPWNSI 315
            KGV +   GE+ SC FC+    S E   L+ED  V  F P  P    H+LVVP++HI  V  LTP+D  +L+RMR VA  +L+                     DA S+ +F+FH PP+NSI
Sbjct:  138 KGVTYAHDGELVSCRFCEILNASDEP-FLYEDEDVVVFRPLAPVVMSHILVVPRRHIRNVNKLTPDDADLLKRMRNVAASVLREMPRPSKSEGNHVSTGAITDNDAESDYKFAFHTPPFNSI 258          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: A0A2J7RA74_9NEOP (HIT domain-containing protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RA74_9NEOP)

HSP 1 Score: 76.3 bits (186), Expect = 2.240e-15
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   46 QSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLK---CDASNMQFSFHIPPWNSI 315
            ++C+FC      ++ EIL++D+    F   KPAA+ H L+V +KHI     LT E   ++E++ ++A+Q+L     D S+++F FH PP+NSI
Sbjct:   21 ENCVFCRICNEEEQSEILYKDDEYVVFPDIKPAARHHYLIVTRKHIRNAKQLTVEHKSLVEKLVQIAKQVLNENGADLSDVRFGFHWPPFNSI 113          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: A0A3M6VX09_9STRA (HIT domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VX09_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.280e-14
Identity = 43/133 (32.33%), Postives = 64/133 (48.12%), Query Frame = 1
Query:    1 DILAKGVVWNARGEMQSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLK-----------------------CDAS-----NMQFSFHIPPWNSI 315
             +  KGV +   G + SC FC+  +  KE   L++D  V  F P  P    H+LVVP++HI  V +LTP++  +L RMRE+A  +L+                       C        + +F+FH PP+NSI
Sbjct:  120 SVAKKGVTYGHNGTLVSCRFCEILESGKET-FLYQDEDVVVFRPLAPVVVSHILVVPRRHIRNVSELTPDEATLLRRMREIAAMILREMPRPLEVLAPSKAERAYDVAEDCTDEEDYEPDFKFAFHSPPFNSI 251          
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Match: L0KCL9_HALHC (HIT family hydrolase, diadenosine tetraphosphate hydrolase n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) TaxID=748449 RepID=L0KCL9_HALHC)

HSP 1 Score: 71.2 bits (173), Expect = 8.110e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   43 MQSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAKQHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQL 255
            M+ CLFC       E +IL+ED  V AF   KP A  HLL+VPKKHIST+ DL  EDN ++  + +VA +L
Sbjct:    1 MEDCLFCKIVSGDVESDILYEDEQVIAFQDIKPQAPVHLLIVPKKHISTLLDLKEEDNNLVGHIYQVANKL 71          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2142.6547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWP1_ECTSI1.950e-5173.33HIT domain-containing protein n=2 Tax=Ectocarpus T... [more]
U9TE69_RHIID5.980e-1741.94HIT domain-containing protein n=4 Tax=Rhizophagus ... [more]
UPI00077B98B92.230e-1634.95histidine triad nucleotide-binding protein 3 isofo... [more]
K5WFJ8_PHACS3.900e-1640.66HIT domain-containing protein n=1 Tax=Phanerochaet... [more]
A0A067R9E6_ZOONE7.870e-1640.22Histidine triad nucleotide-binding protein 3 n=1 T... [more]
K3XBI6_GLOUD8.970e-1637.29HIT domain-containing protein n=1 Tax=Globisporang... [more]
A0A662WLK2_9STRA1.070e-1539.34HIT domain-containing protein n=2 Tax=Nothophytoph... [more]
A0A2J7RA74_9NEOP2.240e-1537.63HIT domain-containing protein n=1 Tax=Cryptotermes... [more]
A0A3M6VX09_9STRA2.280e-1432.33HIT domain-containing protein n=1 Tax=Peronospora ... [more]
L0KCL9_HALHC8.110e-1449.30HIT family hydrolase, diadenosine tetraphosphate h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2142contigL-elsbetiae_contig2142:5327..5641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.2e-40
Seed eggNOG ortholog2880.D7FWP1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nucleoside phosphate binding
EggNOG OGsCOG0537@1,KOG4359@2759
COG Functional cat.FG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHistidine triad (HIT) protein
Ec32 orthologEc-06_001390.1
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815875.7838347-CDS-L-elsbetiae_contig2142:5326..56411622815875.7838347-CDS-L-elsbetiae_contig2142:5326..5641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2142 5327..5641 -
1691683161.6688192-CDS-L-elsbetiae_contig2142:5326..56411691683161.6688192-CDS-L-elsbetiae_contig2142:5326..5641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2142 5327..5641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2142.6547.1prot_L-elsbetiae_contig2142.6547.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2142 5327..5641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2142.6547.1

>prot_L-elsbetiae_contig2142.6547.1 ID=prot_L-elsbetiae_contig2142.6547.1|Name=mRNA_L-elsbetiae_contig2142.6547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
DILAKGVVWNARGEMQSCLFCDFTQRSKEKEILFEDNLVAAFGPQKPAAK
QHLLVVPKKHISTVGDLTPEDNQVLERMREVAEQLLKCDASNMQFSFHIP
PWNSI
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mRNA from alignment at L-elsbetiae_contig2142:5327..5641-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2142.6547.1 ID=mRNA_L-elsbetiae_contig2142.6547.1|Name=mRNA_L-elsbetiae_contig2142.6547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=315bp|location=Sequence derived from alignment at L-elsbetiae_contig2142:5327..5641- (Laminarionema elsbetiae ELsaHSoW15)
GACATTTTGGCGAAGGGCGTCGTTTGGAATGCGAGAGGAGAGATGCAGAG CTGCCTCTTCTGCGACTTCACGCAGCGCAGCAAGGAGAAGGAGATCTTGT TTGAAGACAACCTCGTGGCTGCCTTCGGCCCGCAGAAACCAGCGGCAAAG CAACACCTATTGGTGGTTCCCAAGAAGCACATTTCGACCGTTGGCGATTT GACCCCTGAAGATAACCAGGTTCTTGAGAGGATGAGAGAGGTGGCGGAGC AGCTGCTCAAGTGCGACGCTTCCAACATGCAGTTCAGTTTCCACATACCT CCGTGGAACAGCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2142:5327..5641-

>mRNA_L-elsbetiae_contig2142.6547.1 ID=mRNA_L-elsbetiae_contig2142.6547.1|Name=mRNA_L-elsbetiae_contig2142.6547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig2142:5327..5641- (Laminarionema elsbetiae ELsaHSoW15)
GACATTTTGGCGAAGGGCGTCGTTTGGAATGCGAGAGGAGAGATGCAGAG
CTGCCTCTTCTGCGACTTCACGCAGCGCAGCAAGGAGAAGGAGATCTTGT
TTGAAGACAACCTCGTGGCTGCCTTCGGCCCGCAGAAACCAGCGGCAAAG
CAACACCTATTGGTGGTTCCCAAGAAGCACATTTCGACCGTTGGCGATTT
GACCCCTGAAGATAACCAGGTTCTTGAGAGGATGAGAGAGGTGGCGGAGC
AGCTGCTCAAGTGCGACGCTTCCAACATGCAGTTCAGTTTCCACATACCT
CCGTGGAACAGCATCGACATTTTGGCGAAGGGCGTCGTTTGGAATGCGAG
AGGAGAGATGCAGAGCTGCCTCTTCTGCGACTTCACGCAGCGCAGCAAGG
AGAAGGAGATCTTGTTTGAAGACAACCTCGTGGCTGCCTTCGGCCCGCAG
AAACCAGCGGCAAAGCAACACCTATTGGTGGTTCCCAAGAAGCACATTTC
GACCGTTGGCGATTTGACCCCTGAAGATAACCAGGTTCTTGAGAGGATGA
GAGAGGTGGCGGAGCAGCTGCTCAAGTGCGACGCTTCCAACATGCAGTTC
AGTTTCCACATACCTCCGTGGAACAGCATC
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