mRNA_L-elsbetiae_contig2140.6544.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Match: D8LQP4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP4_ECTSI) HSP 1 Score: 285 bits (729), Expect = 1.740e-78 Identity = 289/769 (37.58%), Postives = 356/769 (46.29%), Query Frame = 1
Query: 1 LPAWLAASKAALAASQADHQETQRRISKLQEVTRGLSIIDFSKHNGNEDAPRISTSGCHVGECDGVGEGEGLAPEEKPLSG---------LQQLHRMTLGVIAEVVSFLDPQAVLSYALACKAAEEALWQDESWGGIHRVRHLKA-VVGAPR-LLSSSASPSPARNPGLAETSPLRRAVIAHARSLSRALRLFDLAVSDGGTTKAVINGPARTAAAVASLQALVEITANVSDPVVRREFAHARAGQVLLSLVTRQHGGSA--DLACAVLGNLFCDDPGAEAAAAETSGQAAAGSNAPDGSAADKLLGRSKRFAIQALTALCSSTRPALPFCSAPKSGGGGMRPVENLAGRQASRALINLLLPRYQVSQQ----------------------PATMPSNARNLGDCRPRQQPAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLQQSHAEAVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPLSGGRDGGAGVAXXXXXXXXXXRRRGGEVGRGQEQKEGRAIDRRTTLPLVAVPAADDG-GIMQLLQSAAPTAKAAEAAARTMAEATPVSDESAXXXXXXXXXXXXGQRPXXXXXXXXXXXXXXXGPAT----PTTGKAAVQLPAXXXXXXXXXXXXQGVSPSRAAPPATAGP-GPCLAGGYRQL---EESWEAFYFYHSGGVKDIFLVSLGFSTTSGGGIFGRGVDKLGNFVMEGAPLLGNAAGDTWF-MTKTYTGRGLPDAA--GGR 2166
L AWLAASKAALAASQAD +ETQRRIS+LQE T L+IIDF+ H E S SG G+ D + +P++K SG L+QLH M +GVI VVSFL+P+++LSY L CK ++ L QDE WGGI RV HL++ V+G P L + ++N + +P+R AVIA RSLS ALRLFD V DGG +KAVINGP VLLS++ R+HG + DLACA L NLFC+ G+ +A + + P GSAA K+LGR+K A+QALTALCSSTRP+ SAPK GGGGMRPVENL GRQASRALINLLLP+ QV QQ P+ +P NA + G XXXXXXXXXXXXXXXXXXX Q+ + + A E P+ + G V GG ++ P+++ + G G M+ + P + A A+ T A P DE A Q G A+ P T + A S PPA P CLA R+ EE WEAFYFY GG+KD F V L GGG G GVDKLG+FVMEG+PLL AG+TW M + T L AA GGR
Sbjct: 62 LRAWLAASKAALAASQADQRETQRRISRLQEATNDLNIIDFASHA--ESKAGCSESG--GGDGDDRAGHQARSPKDKSCSGEESTGSVRHLRQLHCMPMGVIGGVVSFLEPRSILSYGLVCKVVDDVLRQDECWGGIFRVLHLQSDVIGVPHGSLGGAEHHRASQNEEI--KAPMRTAVIARGRSLSLALRLFDAVVLDGGVSKAVINGP------------------------------------VLLSIIAREHGNAMLQDLACAALANLFCEPEGSGSA------EQPLALDMPCGSAAAKMLGRNKGPAVQALTALCSSTRPSPSSWSAPKVGGGGMRPVENLPGRQASRALINLLLPKCQVLQQGTLRGGGFGADYGCSNDRRHSLPSIVPQNAASAGQSSGXX--XXXXXXXXXXXXXXXXXXXXXXTAAGFSTKCGSCSRRTSAPAAAPVVAWQEETKDGMVAVSGRSIATSTRGEETPSYFKHARAPD--ERPVGVDAESGGPVHLPII---------GG-------------LEDHDAEPVLSKSVSTQGPGAMRT--AGTPVRQQATASPTTADAAAPRLDEKAKAGGLASSTPKAPQETPTTPLSIPPAAALELGAASASRFPETQRRYETTEAVQTKTADDGCRDARGSTGPEPPPAPVSPCNTCLALPRREQRPEEEVWEAFYFYQRGGIKDNFNVRLRTFRAPGGGFSGHGVDKLGHFVMEGSPLLDRGAGETWAKMRRKGTSGSLGPAAEPGGR 754
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Match: A0A6H5KIQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ3_9PHAE) HSP 1 Score: 121 bits (304), Expect = 4.240e-27 Identity = 98/213 (46.01%), Postives = 122/213 (57.28%), Query Frame = 1
Query: 1 LPAWLAASKAALAASQADHQETQRRISKLQEVTRGLSIIDFSKHNGNEDAPRISTSGCHVGECDGVGEGEGLAPEEKPLSG---------LQQLHRMTL-GVIAEVVSFLDPQAVLSYALACKAAEEALWQDESWGGIHRVRHLKA-VVGAPRL-LSSSASPSPARNPGLAETSPLRRAVIAHARSLSRALRLFDLAVSDGGTTKAVINGPAR 603
L AWLAASKAALAASQAD +E QRRIS+LQE T L II+F+ H E S SG G+ D G + +P++K +G L+QLH M L G +A ++ L P L+CK DE WGGI RV HL+ V+G P + S S ++N + +P+R AVIA RSLS ALRLFD V D G +KAVINGP R
Sbjct: 62 LRAWLAASKAALAASQADQREIQRRISRLQEATNDLKIIEFASHA--ESKAGGSESGGGSGD-DRAGN-QARSPKDKSCNGEESTRSLPHLRQLHCMPLVGPLAHMLLCLPP-------LSCK--------DECWGGIFRVFHLQPDVIGVPHASVRGSDSHRASQNDEI--KAPMRTAVIARGRSLSLALRLFDATVVDCGVSKAVINGPVR 253
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Match: A0A6H5KJ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ17_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 7.420e-16 Identity = 121/442 (27.38%), Postives = 152/442 (34.39%), Query Frame = 1
Query: 937 PALPFCSAPKSGGGGMRPVENLAGRQASRALINLLLPRYQVSQQ----------------------PATMPSNARNLGDCR-PRQQPAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLQQSHAEAVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPLSGGRDGGAGVAXXXXXXXXXXRRRGGEVGRGQEQKEGRAID------RRTTLPLV-------AVP----AADDGGIMQLLQSAAPTAKAAEAAARTMAEATPVSDESAXXXXXXXXXXXXGQRPXXXXXXXXXXXXXXXGPAT----PTTGKAAVQLPAXXXXXXXXXXXXQGVSPSRAAPPATAGPG-PCLAGGYRQL---EESWEAFYFYHSGGVKDIFLVSLGFSTTSGGGIFGRGVDKLGNFVMEGAPLLGNAAGDTWFM 2118
P +C+ + G GGMRPVENL GRQASRALINLLLP+YQV QQ P T+P NA ++G P+ AA +++ A A A +DG V+ +V + E R +D R LP++ AVP G + + P + A A+ T A A P DE Q G A+ P T + A S PPA P CLA R+ EE WEAFYFY GG+KD F V L S S GG GRGVDKLG+FVMEG+PLL AG+TW++
Sbjct: 35 PIGTYCAPVQVGEGGMRPVENLPGRQASRALINLLLPKYQVLQQGTLRGGGFAADYGCSNDRRHSLPVTVPQNAASMGQSSGPKNATAA-----------------------------GQCSGTAAGFSTKCGSCCRRTSAPAAAAAVVAWQEET--------------------------KDGMVAVSGRSIATSIRGEEAASDVKHARAPDE-RPVDVDAESGGRVQLPIIGGLEDHDAVPILNKTVSTQGPEAMRTAGTPLRQQATASPTTAAAAAPRPDEKEKAGRLASSTPKAPQETPTTPLSILPAAALKLGAASASRFPETQRRCENTEAVQTKTVDDGFRDARGSMGPEPPPAPGSPSNTCLAPPRREQRPEEEVWEAFYFYQRGGIKDNFNVRLRTSMASAGGFSGRGVDKLGHFVMEGSPLLDRGAGETWWV 420 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2140.6544.1 >prot_L-elsbetiae_contig2140.6544.1 ID=prot_L-elsbetiae_contig2140.6544.1|Name=mRNA_L-elsbetiae_contig2140.6544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=827bp LPAWLAASKAALAASQADHQETQRRISKLQEVTRGLSIIDFSKHNGNEDAback to top mRNA from alignment at L-elsbetiae_contig2140:8260..19187+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2140.6544.1 ID=mRNA_L-elsbetiae_contig2140.6544.1|Name=mRNA_L-elsbetiae_contig2140.6544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10928bp|location=Sequence derived from alignment at L-elsbetiae_contig2140:8260..19187+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2140:8260..19187+ >mRNA_L-elsbetiae_contig2140.6544.1 ID=mRNA_L-elsbetiae_contig2140.6544.1|Name=mRNA_L-elsbetiae_contig2140.6544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4962bp|location=Sequence derived from alignment at L-elsbetiae_contig2140:8260..19187+ (Laminarionema elsbetiae ELsaHSoW15)back to top |