prot_L-elsbetiae_contig2140.6544.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2140.6544.1
Unique Nameprot_L-elsbetiae_contig2140.6544.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length827
Homology
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Match: D8LQP4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP4_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 1.740e-78
Identity = 289/769 (37.58%), Postives = 356/769 (46.29%), Query Frame = 0
Query:    1 LPAWLAASKAALAASQADHQETQRRISKLQEVTRGLSIIDFSKHNGNEDAPRISTSGCHVGECDGVGEGEGLAPEEKPLSG---------LQQLHRMTLGVIAEVVSFLDPQAVLSYALACKAAEEALWQDESWGGIHRVRHLKA-VVGAPR-LLSSSASPSPARNPGLAETSPLRRAVIAHARSLSRALRLFDLAVSDGGTTKAVINGPARTAAAVASLQALVEITANVSDPVVRREFAHARAGQVLLSLVTRQHGGSA--DLACAVLGNLFCDDPGAEAAAAETSGQAAAGSNAPDGSAADKLLGRSKRFAIQALTALCSSTRPALPFCSAPKSGGGGMRPVENLAGRQASRALINLLLPRYQVSQQ----------------------PATMPSNARNLGDCRPRQQPAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLQQSHAEAVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPLSGGRDGGAGVAXXXXXXXXXXRRRGGEVGRGQEQKEGRAIDRRTTLPLVAVPAADDG-GIMQLLQSAAPTAKAAEAAARTMAEATPVSDESAXXXXXXXXXXXXGQRPXXXXXXXXXXXXXXXGPAT----PTTGKAAVQLPAXXXXXXXXXXXXQGVSPSRAAPPATAGP-GPCLAGGYRQL---EESWEAFYFYHSGGVKDIFLVSLGFSTTSGGGIFGRGVDKLGNFVMEGAPLLGNAAGDTWF-MTKTYTGRGLPDAA--GGR 722
            L AWLAASKAALAASQAD +ETQRRIS+LQE T  L+IIDF+ H   E     S SG   G+ D     +  +P++K  SG         L+QLH M +GVI  VVSFL+P+++LSY L CK  ++ L QDE WGGI RV HL++ V+G P   L  +     ++N  +   +P+R AVIA  RSLS ALRLFD  V DGG +KAVINGP                                    VLLS++ R+HG +   DLACA L NLFC+  G+ +A      +     + P GSAA K+LGR+K  A+QALTALCSSTRP+    SAPK GGGGMRPVENL GRQASRALINLLLP+ QV QQ                      P+ +P NA + G           XXXXXXXXXXXXXXXXXXX                           Q+   + + A                            E P+    + G  V              GG             ++     P+++   +  G G M+   +  P  + A A+  T   A P  DE A             Q                 G A+    P T +      A               S     PPA   P   CLA   R+    EE WEAFYFY  GG+KD F V L      GGG  G GVDKLG+FVMEG+PLL   AG+TW  M +  T   L  AA  GGR
Sbjct:   62 LRAWLAASKAALAASQADQRETQRRISRLQEATNDLNIIDFASHA--ESKAGCSESG--GGDGDDRAGHQARSPKDKSCSGEESTGSVRHLRQLHCMPMGVIGGVVSFLEPRSILSYGLVCKVVDDVLRQDECWGGIFRVLHLQSDVIGVPHGSLGGAEHHRASQNEEI--KAPMRTAVIARGRSLSLALRLFDAVVLDGGVSKAVINGP------------------------------------VLLSIIAREHGNAMLQDLACAALANLFCEPEGSGSA------EQPLALDMPCGSAAAKMLGRNKGPAVQALTALCSSTRPSPSSWSAPKVGGGGMRPVENLPGRQASRALINLLLPKCQVLQQGTLRGGGFGADYGCSNDRRHSLPSIVPQNAASAGQSSGXX--XXXXXXXXXXXXXXXXXXXXXXTAAGFSTKCGSCSRRTSAPAAAPVVAWQEETKDGMVAVSGRSIATSTRGEETPSYFKHARAPD--ERPVGVDAESGGPVHLPII---------GG-------------LEDHDAEPVLSKSVSTQGPGAMRT--AGTPVRQQATASPTTADAAAPRLDEKAKAGGLASSTPKAPQETPTTPLSIPPAAALELGAASASRFPETQRRYETTEAVQTKTADDGCRDARGSTGPEPPPAPVSPCNTCLALPRREQRPEEEVWEAFYFYQRGGIKDNFNVRLRTFRAPGGGFSGHGVDKLGHFVMEGSPLLDRGAGETWAKMRRKGTSGSLGPAAEPGGR 754          
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Match: A0A6H5KIQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.240e-27
Identity = 98/213 (46.01%), Postives = 122/213 (57.28%), Query Frame = 0
Query:    1 LPAWLAASKAALAASQADHQETQRRISKLQEVTRGLSIIDFSKHNGNEDAPRISTSGCHVGECDGVGEGEGLAPEEKPLSG---------LQQLHRMTL-GVIAEVVSFLDPQAVLSYALACKAAEEALWQDESWGGIHRVRHLKA-VVGAPRL-LSSSASPSPARNPGLAETSPLRRAVIAHARSLSRALRLFDLAVSDGGTTKAVINGPAR 201
            L AWLAASKAALAASQAD +E QRRIS+LQE T  L II+F+ H   E     S SG   G+ D  G  +  +P++K  +G         L+QLH M L G +A ++  L P       L+CK        DE WGGI RV HL+  V+G P   +  S S   ++N  +   +P+R AVIA  RSLS ALRLFD  V D G +KAVINGP R
Sbjct:   62 LRAWLAASKAALAASQADQREIQRRISRLQEATNDLKIIEFASHA--ESKAGGSESGGGSGD-DRAGN-QARSPKDKSCNGEESTRSLPHLRQLHCMPLVGPLAHMLLCLPP-------LSCK--------DECWGGIFRVFHLQPDVIGVPHASVRGSDSHRASQNDEI--KAPMRTAVIARGRSLSLALRLFDATVVDCGVSKAVINGPVR 253          
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Match: A0A6H5KJ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ17_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.420e-16
Identity = 121/442 (27.38%), Postives = 152/442 (34.39%), Query Frame = 0
Query:  313 PALPFCSAPKSGGGGMRPVENLAGRQASRALINLLLPRYQVSQQ----------------------PATMPSNARNLGDCR-PRQQPAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLQQSHAEAVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPLSGGRDGGAGVAXXXXXXXXXXRRRGGEVGRGQEQKEGRAID------RRTTLPLV-------AVP----AADDGGIMQLLQSAAPTAKAAEAAARTMAEATPVSDESAXXXXXXXXXXXXGQRPXXXXXXXXXXXXXXXGPAT----PTTGKAAVQLPAXXXXXXXXXXXXQGVSPSRAAPPATAGPG-PCLAGGYRQL---EESWEAFYFYHSGGVKDIFLVSLGFSTTSGGGIFGRGVDKLGNFVMEGAPLLGNAAGDTWFM 706
            P   +C+  + G GGMRPVENL GRQASRALINLLLP+YQV QQ                      P T+P NA ++G    P+   AA                                               +++ A A  A                                   +DG   V+               +V   +   E R +D       R  LP++       AVP         G   +  +  P  + A A+  T A A P  DE               Q                 G A+    P T +      A               S     PPA   P   CLA   R+    EE WEAFYFY  GG+KD F V L  S  S GG  GRGVDKLG+FVMEG+PLL   AG+TW++
Sbjct:   35 PIGTYCAPVQVGEGGMRPVENLPGRQASRALINLLLPKYQVLQQGTLRGGGFAADYGCSNDRRHSLPVTVPQNAASMGQSSGPKNATAA-----------------------------GQCSGTAAGFSTKCGSCCRRTSAPAAAAAVVAWQEET--------------------------KDGMVAVSGRSIATSIRGEEAASDVKHARAPDE-RPVDVDAESGGRVQLPIIGGLEDHDAVPILNKTVSTQGPEAMRTAGTPLRQQATASPTTAAAAAPRPDEKEKAGRLASSTPKAPQETPTTPLSILPAAALKLGAASASRFPETQRRCENTEAVQTKTVDDGFRDARGSMGPEPPPAPGSPSNTCLAPPRREQRPEEEVWEAFYFYQRGGIKDNFNVRLRTSMASAGGFSGRGVDKLGHFVMEGSPLLDRGAGETWWV 420          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2140.6544.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQP4_ECTSI1.740e-7837.58F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIQ3_9PHAE4.240e-2746.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ17_9PHAE7.420e-1627.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..826
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2140contigL-elsbetiae_contig2140:8260..19187 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2140.6544.1mRNA_L-elsbetiae_contig2140.6544.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2140 8260..19187 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2140.6544.1 ID=prot_L-elsbetiae_contig2140.6544.1|Name=mRNA_L-elsbetiae_contig2140.6544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=827bp
LPAWLAASKAALAASQADHQETQRRISKLQEVTRGLSIIDFSKHNGNEDA
PRISTSGCHVGECDGVGEGEGLAPEEKPLSGLQQLHRMTLGVIAEVVSFL
DPQAVLSYALACKAAEEALWQDESWGGIHRVRHLKAVVGAPRLLSSSASP
SPARNPGLAETSPLRRAVIAHARSLSRALRLFDLAVSDGGTTKAVINGPA
RTAAAVASLQALVEITANVSDPVVRREFAHARAGQVLLSLVTRQHGGSAD
LACAVLGNLFCDDPGAEAAAAETSGQAAAGSNAPDGSAADKLLGRSKRFA
IQALTALCSSTRPALPFCSAPKSGGGGMRPVENLAGRQASRALINLLLPR
YQVSQQPATMPSNARNLGDCRPRQQPAAQRRRSLPPVPSSSSPAARQQEP
PPPPPPPPQQQQQQQQQQPQGGGVLQQSHAEAVPAPAKAGRHGRGRGGGP
SVSVAWAGGTGAGEGPLSGGRDGGAGVAGGGGGGGGETRRRGGEVGRGQE
QKEGRAIDRRTTLPLVAVPAADDGGIMQLLQSAAPTAKAAEAAARTMAEA
TPVSDESAASASSPAAPRAAGQRPAEPPSTATTASPPAPGPATPTTGKAA
VQLPAAPSPTGPPTPEAQGVSPSRAAPPATAGPGPCLAGGYRQLEESWEA
FYFYHSGGVKDIFLVSLGFSTTSGGGIFGRGVDKLGNFVMEGAPLLGNAA
GDTWFMTKTYTGRGLPDAAGGRSGGAHVTHTAYLTDGLARDRRRSLECDT
APFRNMASLSGTDRHTGFWGVWEPVLGRAGGGGGGGSGGGGSVSSTSGAS
AVPDGCRTTLSRRGGVFRLVPKQQEE*
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