mRNA_L-elsbetiae_contig21366.6528.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21366.6528.1
Unique NamemRNA_L-elsbetiae_contig21366.6528.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21366.6528.1 vs. uniprot
Match: A0A6H5JMK9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 9.330e-35
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 ESMANPQEFIGALKTSLWIIWGSYSVLGGAALLIYQQQGPVSDNIMAQLPGDSPAQEPLLLFITMATLFTYPLA 222
            ESMAN +EFIGALKTSLWIIW SYSVLGG ALLIYQQ GPVSDNIM+QLP  SPAQEPLLLFITMATLFTYPLA
Sbjct: 1028 ESMANTEEFIGALKTSLWIIWSSYSVLGGVALLIYQQHGPVSDNIMSQLPSGSPAQEPLLLFITMATLFTYPLA 1101
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BLAST of mRNA_L-elsbetiae_contig21366.6528.1 vs. uniprot
Match: D7G755_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G755_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.790e-34
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 ESMANPQEFIGALKTSLWIIWGSYSVLGGAALLIYQQQGPVSDNIMAQLPGDSPAQEPLLLFITMATLFTYPLA 222
            ESMAN +EFIGALKTSLWIIW SYSVLGG ALLI+QQ GPVSDNIM+QLP DS AQEPLLLFITMATLFTYPLA
Sbjct:  262 ESMANTEEFIGALKTSLWIIWSSYSVLGGVALLIFQQDGPVSDNIMSQLPSDSLAQEPLLLFITMATLFTYPLA 335
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21366.6528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMK9_9PHAE9.330e-3589.19Reverse transcriptase domain-containing protein n=... [more]
D7G755_ECTSI1.790e-3487.84Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21366contigL-elsbetiae_contig21366:232..657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue8.9e-28
Seed eggNOG ortholog2880.D7G755
KEGG koko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko04138,map04138
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.amino acid transmembrane transporter activity
EggNOG OGsCOG0814@1,KOG1304@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Ec32 ortholog descriptionAmino acid transporter, transmembrane
Ec32 orthologEc-01_010990.1
Exons2
Model size225
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21366.6528.1prot_L-elsbetiae_contig21366.6528.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21366 232..651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.9313183-CDS-L-elsbetiae_contig21366:231..3921622815873.9313183-CDS-L-elsbetiae_contig21366:231..392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21366 232..392 -
1691683160.4408925-CDS-L-elsbetiae_contig21366:231..3921691683160.4408925-CDS-L-elsbetiae_contig21366:231..392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21366 232..392 -
1622815873.942885-CDS-L-elsbetiae_contig21366:593..6511622815873.942885-CDS-L-elsbetiae_contig21366:593..651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21366 594..651 -
1691683160.4538116-CDS-L-elsbetiae_contig21366:593..6511691683160.4538116-CDS-L-elsbetiae_contig21366:593..651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21366 594..651 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.9538186-UTR-L-elsbetiae_contig21366:651..6571622815873.9538186-UTR-L-elsbetiae_contig21366:651..657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21366 652..657 -
1691683160.4639063-UTR-L-elsbetiae_contig21366:651..6571691683160.4639063-UTR-L-elsbetiae_contig21366:651..657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21366 652..657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21366.6528.1

>prot_L-elsbetiae_contig21366.6528.1 ID=prot_L-elsbetiae_contig21366.6528.1|Name=mRNA_L-elsbetiae_contig21366.6528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MANPQEFIGALKTSLWIIWGSYSVLGGAALLIYQQQGPVSDNIMAQLPGD
SPAQEPLLLFITMATLFTYPLAV
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mRNA from alignment at L-elsbetiae_contig21366:232..657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21366.6528.1 ID=mRNA_L-elsbetiae_contig21366.6528.1|Name=mRNA_L-elsbetiae_contig21366.6528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig21366:232..657- (Laminarionema elsbetiae ELsaHSoW15)
GAGTCGATGGCGAACCCCCAGGAGTTTATCGGTGCCCTCAAGACCTCCCT
TTGGATAATCTGGGGTAAGTTTTTCCGCAGCAGTGGTATTTTAACAGTTT
CTCAAGAAAACTGATGCCACACACACACATCAGCGGCAGCAAGCTGCCGG
TGTTTTGATCGTTGGTCAAGACAAGGTTCGTTGCGACCGGGTGTGCCAGT
AAATCGCAGCCGAGACTCGACCCGGCTTATCCTAATCCTTGCTTCCCACT
CCCCCGCCGCCACAGGCTCTTACTCCGTTTTGGGCGGTGCCGCACTGCTG
ATCTACCAGCAGCAAGGGCCGGTGTCAGACAACATCATGGCGCAGCTGCC
CGGCGACTCGCCTGCCCAGGAACCTCTCCTCTTGTTCATCACAATGGCTA
CTCTGTTCACCTACCCCCTCGCGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21366:232..657-

>mRNA_L-elsbetiae_contig21366.6528.1 ID=mRNA_L-elsbetiae_contig21366.6528.1|Name=mRNA_L-elsbetiae_contig21366.6528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig21366:232..657- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACCCCCAGGAGTTTATCGGTGCCCTCAAGACCTCCCTTTGGAT
AATCTGGGATGGCGAACCCCCAGGAGTTTATCGGTGCCCTCAAGACCTCC
CTTTGGATAATCTGGGGCTCTTACTCCGTTTTGGGCGGTGCCGCACTGCT
GATCTACCAGCAGCAAGGGCCGGTGTCAGACAACATCATGGCGCAGCTGC
CCGGCGACTCGCCTGCCCAGGAACCTCTCCTCTTGTTCATCACAATGGCT
ACTCTGTTCACCTACCCCCTCGCGGTGGCTCTTACTCCGTTTTGGGCGGT
GCCGCACTGCTGATCTACCAGCAGCAAGGGCCGGTGTCAGACAACATCAT
GGCGCAGCTGCCCGGCGACTCGCCTGCCCAGGAACCTCTCCTCTTGTTCA
TCACAATGGCTACTCTGTTCACCTACCCCCTCGCGGTG
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