prot_L-elsbetiae_contig21366.6528.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig21366.6528.1
Unique Name	prot_L-elsbetiae_contig21366.6528.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	73

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig21366.6528.1 vs. uniprot
Match: A0A6H5JMK9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.050e-34
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0

Query:    1 MANPQEFIGALKTSLWIIWGSYSVLGGAALLIYQQQGPVSDNIMAQLPGDSPAQEPLLLFITMATLFTYPLA 72
            MAN +EFIGALKTSLWIIW SYSVLGG ALLIYQQ GPVSDNIM+QLP  SPAQEPLLLFITMATLFTYPLA
Sbjct: 1030 MANTEEFIGALKTSLWIIWSSYSVLGGVALLIYQQHGPVSDNIMSQLPSGSPAQEPLLLFITMATLFTYPLA 1101

[Close]

BLAST of mRNA_L-elsbetiae_contig21366.6528.1 vs. uniprot
Match: D7G755_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G755_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 8.610e-34
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0

Query:    1 MANPQEFIGALKTSLWIIWGSYSVLGGAALLIYQQQGPVSDNIMAQLPGDSPAQEPLLLFITMATLFTYPLA 72
            MAN +EFIGALKTSLWIIW SYSVLGG ALLI+QQ GPVSDNIM+QLP DS AQEPLLLFITMATLFTYPLA
Sbjct:  264 MANTEEFIGALKTSLWIIWSSYSVLGGVALLIFQQDGPVSDNIMSQLPSDSLAQEPLLLFITMATLFTYPLA 335

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig21366.6528.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig21366.6528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JMK9_9PHAE	4.050e-34	88.89	Reverse transcriptase domain-containing protein n=...	[more]
D7G755_ECTSI	8.610e-34	87.50	Aa_trans domain-containing protein n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 73..73
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 53..72
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 15..33
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..52
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..14
None	No IPR available	TMHMM	TMhelix		coord: 15..33

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig21366	contig	L-elsbetiae_contig21366:232..651 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig21366.6528.1	mRNA_L-elsbetiae_contig21366.6528.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig21366 232..657 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig21366.6528.1 ID=prot_L-elsbetiae_contig21366.6528.1|Name=mRNA_L-elsbetiae_contig21366.6528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MANPQEFIGALKTSLWIIWGSYSVLGGAALLIYQQQGPVSDNIMAQLPGD
SPAQEPLLLFITMATLFTYPLAV