mRNA_L-elsbetiae_contig21307.6516.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21307.6516.1
Unique NamemRNA_L-elsbetiae_contig21307.6516.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21307.6516.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.660e-30
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = -2 
Query:    3 RGAATLLAGAALWLVAAPLLAAGLYETAFVVTAPEWVARGPVGALPCWSQPLRTLALGVFLLHAWACACRAGAPRWIAAMLR 248
            R AATLLAGA LWLV APLLAAGL+ETAFVVTA  W  +GP+GALPC SQPLR+LALG+FLLHAWA ACRA  PRWIAA  R
Sbjct: 1449 RAAATLLAGAVLWLVVAPLLAAGLFETAFVVTAQAWAEKGPLGALPCCSQPLRSLALGMFLLHAWAYACRARVPRWIAATRR 1530
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21307.6516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE5.660e-3078.05RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21307contigL-elsbetiae_contig21307:1275..1800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size526
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.0159209-CDS-L-elsbetiae_contig21307:1274..17991622815873.0159209-CDS-L-elsbetiae_contig21307:1274..1799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21307 1275..1799 +
1691683159.8329926-CDS-L-elsbetiae_contig21307:1274..17991691683159.8329926-CDS-L-elsbetiae_contig21307:1274..1799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21307 1275..1799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21307.6516.1prot_L-elsbetiae_contig21307.6516.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21307 1275..1799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21307.6516.1

>prot_L-elsbetiae_contig21307.6516.1 ID=prot_L-elsbetiae_contig21307.6516.1|Name=mRNA_L-elsbetiae_contig21307.6516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
ALSIAAIHLGAPARQAQAHACRRNTPRASVRSGWLQQGSAPTGPLATHSG
AVTTKAVSYSPAASRGAATSQRAAPARSVAAPRRAALLASLSSVCCCAAR
SATALLEAAANLAALPSSSFSSPACCCCCCCCCWSCPSRSSAAALAAAVA
SSARSRSCSRSSRSRSCCSTCSTSR
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mRNA from alignment at L-elsbetiae_contig21307:1275..1800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21307.6516.1 ID=mRNA_L-elsbetiae_contig21307.6516.1|Name=mRNA_L-elsbetiae_contig21307.6516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=526bp|location=Sequence derived from alignment at L-elsbetiae_contig21307:1275..1800+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCTCAGCATTGCGGCGATCCACCTCGGGGCCCCCGCCCGGCAGGCGCA
GGCCCACGCGTGCAGAAGAAACACGCCCAGGGCCAGCGTCCGCAGCGGCT
GGCTCCAGCAGGGCAGCGCCCCCACGGGCCCCCTGGCCACCCACTCCGGC
GCGGTCACCACGAAGGCCGTCTCGTACAGCCCCGCCGCCAGCAGGGGGGC
CGCCACGAGCCAGAGGGCCGCGCCCGCCAGGAGCGTCGCCGCGCCGCGGA
GGGCGGCCCTCCTCGCTTCCTTGTCTTCCGTCTGCTGCTGCGCCGCCAGG
AGCGCTACCGCGTTGCTCGAGGCGGCGGCCAATCTCGCCGCGCTTCCTTC
TTCCTCCTTCTCCTCCCCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGTCCTGCCCATCCCGCAGCTCCGCGGCGGCGCTCGCTGCTGCCGTCGCC
TCGTCCGCCAGGAGCCGCAGTTGCTCGCGCAGCTCTCGCAGCCGCAGCTG
CTGCTCCACCTGCTCCACGAGCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21307:1275..1800+

>mRNA_L-elsbetiae_contig21307.6516.1 ID=mRNA_L-elsbetiae_contig21307.6516.1|Name=mRNA_L-elsbetiae_contig21307.6516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig21307:1275..1800+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCTCAGCATTGCGGCGATCCACCTCGGGGCCCCCGCCCGGCAGGCGCA
GGCCCACGCGTGCAGAAGAAACACGCCCAGGGCCAGCGTCCGCAGCGGCT
GGCTCCAGCAGGGCAGCGCCCCCACGGGCCCCCTGGCCACCCACTCCGGC
GCGGTCACCACGAAGGCCGTCTCGTACAGCCCCGCCGCCAGCAGGGGGGC
CGCCACGAGCCAGAGGGCCGCGCCCGCCAGGAGCGTCGCCGCGCCGCGGA
GGGCGGCCCTCCTCGCTTCCTTGTCTTCCGTCTGCTGCTGCGCCGCCAGG
AGCGCTACCGCGTTGCTCGAGGCGGCGGCCAATCTCGCCGCGCTTCCTTC
TTCCTCCTTCTCCTCCCCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGTCCTGCCCATCCCGCAGCTCCGCGGCGGCGCTCGCTGCTGCCGTCGCC
TCGTCCGCCAGGAGCCGCAGTTGCTCGCGCAGCTCTCGCAGCCGCAGCTG
CTGCTCCACCTGCTCCACGAGCCGGGCCCTCAGCATTGCGGCGATCCACC
TCGGGGCCCCCGCCCGGCAGGCGCAGGCCCACGCGTGCAGAAGAAACACG
CCCAGGGCCAGCGTCCGCAGCGGCTGGCTCCAGCAGGGCAGCGCCCCCAC
GGGCCCCCTGGCCACCCACTCCGGCGCGGTCACCACGAAGGCCGTCTCGT
ACAGCCCCGCCGCCAGCAGGGGGGCCGCCACGAGCCAGAGGGCCGCGCCC
GCCAGGAGCGTCGCCGCGCCGCGGAGGGCGGCCCTCCTCGCTTCCTTGTC
TTCCGTCTGCTGCTGCGCCGCCAGGAGCGCTACCGCGTTGCTCGAGGCGG
CGGCCAATCTCGCCGCGCTTCCTTCTTCCTCCTTCTCCTCCCCCGCCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGGTCCTGCCCATCCCGCAGCTCCGC
GGCGGCGCTCGCTGCTGCCGTCGCCTCGTCCGCCAGGAGCCGCAGTTGCT
CGCGCAGCTCTCGCAGCCGCAGCTGCTGCTCCACCTGCTCCACGAGCCGG
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