mRNA_L-elsbetiae_contig2130.6514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2130.6514.1
Unique NamemRNA_L-elsbetiae_contig2130.6514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2130.6514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2130contigL-elsbetiae_contig2130:18765..19340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2130.6514.1prot_L-elsbetiae_contig2130.6514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2130 18826..19272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.9139147-UTR-L-elsbetiae_contig2130:18764..188251622815872.9139147-UTR-L-elsbetiae_contig2130:18764..18825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2130 18765..18825 +
1691683159.7794015-UTR-L-elsbetiae_contig2130:18764..188251691683159.7794015-UTR-L-elsbetiae_contig2130:18764..18825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2130 18765..18825 +
1622815872.9397705-UTR-L-elsbetiae_contig2130:19272..193401622815872.9397705-UTR-L-elsbetiae_contig2130:19272..19340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2130 19273..19340 +
1691683159.8028014-UTR-L-elsbetiae_contig2130:19272..193401691683159.8028014-UTR-L-elsbetiae_contig2130:19272..19340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2130 19273..19340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.9288526-CDS-L-elsbetiae_contig2130:18825..192721622815872.9288526-CDS-L-elsbetiae_contig2130:18825..19272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2130 18826..19272 +
1691683159.7939262-CDS-L-elsbetiae_contig2130:18825..192721691683159.7939262-CDS-L-elsbetiae_contig2130:18825..19272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2130 18826..19272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2130.6514.1

>prot_L-elsbetiae_contig2130.6514.1 ID=prot_L-elsbetiae_contig2130.6514.1|Name=mRNA_L-elsbetiae_contig2130.6514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MVNVVSKKCTHHGCTKYPSYGNAGGRAEYCRDHAEDGMVDVTHKTCTHHD
CTKRSSYGKAGGKKEFCGDHAEDGIVSVTKKHGMLSVGKRRSVDATVDGQ
QKRPRFVKEEAVEERVGAAAATTIVAKVGGTQPFMGLGKGQRGRQSSK*
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mRNA from alignment at L-elsbetiae_contig2130:18765..19340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2130.6514.1 ID=mRNA_L-elsbetiae_contig2130.6514.1|Name=mRNA_L-elsbetiae_contig2130.6514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig2130:18765..19340+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCATACGGCAAGGCTGGCGGCAAGGTGGAGTACTGCCGTGACCATG
CCGAGGGTGGGATGGTGAATGTGGTCAGCAAAAAATGCACCCACCACGGT
TGCACCAAGTACCCGTCGTACGGCAACGCTGGCGGCAGGGCAGAATACTG
CCGTGACCATGCCGAAGACGGGATGGTGGACGTGACACACAAGACATGCA
CCCACCACGATTGTACCAAGCGGTCGTCATACGGCAAGGCCGGCGGCAAG
AAAGAGTTCTGCGGTGACCATGCCGAGGACGGAATAGTGAGCGTGACGAA
GAAACATGGTATGCTTAGTGTCGGGAAGAGGCGCTCCGTCGACGCCACGG
TAGACGGACAACAGAAGCGACCCCGCTTCGTCAAAGAAGAAGCTGTAGAG
GAAAGGGTGGGGGCGGCAGCGGCAACCACGATCGTGGCCAAGGTGGGCGG
CACACAACCGTTCATGGGCTTGGGGAAAGGGCAAAGAGGGAGACAGAGTA
GCAAATAAAGGTGGGCTTTCCCCGGCCAGCACCCTATGGAGTTGCGAACG
AGGGCGCACTCGTGTTGTATGTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2130:18765..19340+

>mRNA_L-elsbetiae_contig2130.6514.1 ID=mRNA_L-elsbetiae_contig2130.6514.1|Name=mRNA_L-elsbetiae_contig2130.6514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig2130:18765..19340+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGTGGTCAGCAAAAAATGCACCCACCACGGTTGCACCAAGTA
CCCGTCGTACGGCAACGCTGGCGGCAGGGCAGAATACTGCCGTGACCATG
CCGAAGACGGGATGGTGGACGTGACACACAAGACATGCACCCACCACGAT
TGTACCAAGCGGTCGTCATACGGCAAGGCCGGCGGCAAGAAAGAGTTCTG
CGGTGACCATGCCGAGGACGGAATAGTGAGCGTGACGAAGAAACATGGTA
TGCTTAGTGTCGGGAAGAGGCGCTCCGTCGACGCCACGGTAGACGGACAA
CAGAAGCGACCCCGCTTCGTCAAAGAAGAAGCTGTAGAGGAAAGGGTGGG
GGCGGCAGCGGCAACCACGATCGTGGCCAAGGTGGGCGGCACACAACCGT
TCATGGGCTTGGGGAAAGGGCAAAGAGGGAGACAGAGTAGCAAATAAATG
GTGAATGTGGTCAGCAAAAAATGCACCCACCACGGTTGCACCAAGTACCC
GTCGTACGGCAACGCTGGCGGCAGGGCAGAATACTGCCGTGACCATGCCG
AAGACGGGATGGTGGACGTGACACACAAGACATGCACCCACCACGATTGT
ACCAAGCGGTCGTCATACGGCAAGGCCGGCGGCAAGAAAGAGTTCTGCGG
TGACCATGCCGAGGACGGAATAGTGAGCGTGACGAAGAAACATGGTATGC
TTAGTGTCGGGAAGAGGCGCTCCGTCGACGCCACGGTAGACGGACAACAG
AAGCGACCCCGCTTCGTCAAAGAAGAAGCTGTAGAGGAAAGGGTGGGGGC
GGCAGCGGCAACCACGATCGTGGCCAAGGTGGGCGGCACACAACCGTTCA
TGGGCTTGGGGAAAGGGCAAAGAGGGAGACAGAGTAGCAAATAA
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