mRNA_L-elsbetiae_contig2127.6493.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2127.6493.1
Unique NamemRNA_L-elsbetiae_contig2127.6493.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2127.6493.1 vs. uniprot
Match: D8LFN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN0_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 1.820e-82
Identity = 169/376 (44.95%), Postives = 191/376 (50.80%), Query Frame = 1 
Query:   19 HTGPELRQGLALFRVVNRTGLQIREDIALDSEPCGRLYAGDVFCVNDSSTVIHHQGSHRSGKRGKRGIVRLARLHMVAPRIGWVSGSSKWVSKFQEGG-RPGPIPLRSTLSDNCPVAMVKPSEGRSTARSPTATKGDRYQPEVRGEERYQEASVSTREGPESRVTTPRSRWLHSRGGVWPVAVSSIPGPTYFPAASGATGSHSSAANGVAFPKEQRFLSNATRYLSKDHERQARGLFSPGPAMYVGHDDVMPLAPRPPLTAPGSAHRCPCAEAPGISGGGGAVDCLHRGLLRARRALTAGPLGGQSARRQRVSGGAATHTPYIGIKEREAADKLVGKAKAGATGAPVMRLPISRRGVREGPDGCFFTRMGAASPGP 1143
            ++GPELRQGL LFRV+NRTGLQIR  + L+SEPCGRL+AGDVFCVN  S V HHQ      KRGK   +RL RLHMV P  GWV+ SSKWV KFQ G  RPGPIPL+STL DNCPV+MVKPS+                                           P  R   SR GVWPV V SIPGP Y P+ SGA   HSSA  GV FPKE+RFLSN+TR       RQ                                                                    P+   +A        A   +PYIG+KE+EAADK+VGKA AG TG PV+R  +S RG REGPDGCF TRMGA SPGP
Sbjct:   20 NSGPELRQGLDLFRVINRTGLQIRRGVGLNSEPCGRLFAGDVFCVNRCSAVPHHQ----ENKRGKMRQLRLTRLHMVQPYTGWVTWSSKWVEKFQGGDTRPGPIPLKSTLRDNCPVSMVKPSDA-----------------------------------------CPVRRGASSRDGVWPVDVKSIPGPKYLPSVSGANRDHSSAEYGVVFPKERRFLSNSTR-------RQ--------------------------------------------------------------------PVSSTTA--------AGAGSPYIGLKEQEAADKIVGKANAGTTGCPVIRTLVSSRGEREGPDGCFVTRMGAESPGP 267
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2127.6493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFN0_ECTSI1.820e-8244.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2127contigL-elsbetiae_contig2127:6842..9519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001510.1
Exons4
Model size1479
Cds size1479
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2127.6493.1prot_L-elsbetiae_contig2127.6493.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2127 6842..9519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.125778-CDS-L-elsbetiae_contig2127:6841..73751622815871.125778-CDS-L-elsbetiae_contig2127:6841..7375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 6842..7375 -
1691683158.536909-CDS-L-elsbetiae_contig2127:6841..73751691683158.536909-CDS-L-elsbetiae_contig2127:6841..7375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 6842..7375 -
1622815871.1388242-CDS-L-elsbetiae_contig2127:7998..82601622815871.1388242-CDS-L-elsbetiae_contig2127:7998..8260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 7999..8260 -
1691683158.5462825-CDS-L-elsbetiae_contig2127:7998..82601691683158.5462825-CDS-L-elsbetiae_contig2127:7998..8260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 7999..8260 -
1622815871.2023854-CDS-L-elsbetiae_contig2127:8478..86221622815871.2023854-CDS-L-elsbetiae_contig2127:8478..8622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 8479..8622 -
1691683158.554805-CDS-L-elsbetiae_contig2127:8478..86221691683158.554805-CDS-L-elsbetiae_contig2127:8478..8622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 8479..8622 -
1622815871.2179174-CDS-L-elsbetiae_contig2127:8980..95191622815871.2179174-CDS-L-elsbetiae_contig2127:8980..9519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 8981..9519 -
1691683158.563839-CDS-L-elsbetiae_contig2127:8980..95191691683158.563839-CDS-L-elsbetiae_contig2127:8980..9519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2127 8981..9519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2127.6493.1

>prot_L-elsbetiae_contig2127.6493.1 ID=prot_L-elsbetiae_contig2127.6493.1|Name=mRNA_L-elsbetiae_contig2127.6493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=493bp
MLVCIIHTGPELRQGLALFRVVNRTGLQIREDIALDSEPCGRLYAGDVFC
VNDSSTVIHHQGSHRSGKRGKRGIVRLARLHMVAPRIGWVSGSSKWVSKF
QEGGRPGPIPLRSTLSDNCPVAMVKPSEGRSTARSPTATKGDRYQPEVRG
EERYQEASVSTREGPESRVTTPRSRWLHSRGGVWPVAVSSIPGPTYFPAA
SGATGSHSSAANGVAFPKEQRFLSNATRYLSKDHERQARGLFSPGPAMYV
GHDDVMPLAPRPPLTAPGSAHRCPCAEAPGISGGGGAVDCLHRGLLRARR
ALTAGPLGGQSARRQRVSGGAATHTPYIGIKEREAADKLVGKAKAGATGA
PVMRLPISRRGVREGPDGCFFTRMGAASPGPARHFPECSSISAKGCPVFA
APAALDPVEWERQNKVPGQPRTPQLVKHNAARSKTSQVHHRWPSYTHMGD
RGRISGKLGQDSPGPGAVNIAGHDPFRPSSFLKTDVCHPPPAS
back to top

mRNA from alignment at L-elsbetiae_contig2127:6842..9519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2127.6493.1 ID=mRNA_L-elsbetiae_contig2127.6493.1|Name=mRNA_L-elsbetiae_contig2127.6493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2678bp|location=Sequence derived from alignment at L-elsbetiae_contig2127:6842..9519- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGTGTGCATTATACATACAGGTCCCGAGCTACGGCAAGGGTTGGC
ATTGTTTCGAGTGGTCAACCGCACTGGGTTGCAGATCCGCGAAGACATCG
CACTCGACTCAGAGCCCTGTGGTCGCCTCTACGCCGGAGACGTGTTCTGC
GTCAACGACTCCTCGACAGTAATACACCATCAGGGTTCTCATCGCTCCGG
GAAGCGAGGAAAACGCGGCATAGTGAGGCTCGCTCGATTGCATATGGTAG
CACCTCGCATAGGCTGGGTGAGTGGCTCGTCAAAGTGGGTTTCGAAATTT
CAGGAAGGCGGTCGGCCGGGGCCGATACCGTTGAGATCAACGCTGAGCGA
CAACTGCCCGGTGGCGATGGTGAAGCCATCGGAAGGTCGCTCAACCGCGA
GGTCTCCAACCGCTACCAAGGGTGATAGGTATCAGCCTGAGGTGCGGGGT
GAGGAAAGGTATCAAGAGGCAAGCGTGTCTACGCGTGAAGGTCCAGAGTC
GAGGGTAACTACTCCGAGGTCCAGATGGCTACACTCAAGGTGATAGTCTC
ATGAACGGACCCTTCTTTACCTGCCAGTAATACAGAATGAGCAGCACTAG
TACTCCGTAACAGTGGACATTTAGTGTATACATCAGGAGCAGGCCATCCT
CTGCAAACAAGCTATCCGTTTGGATCGATACTACAGCCCCGTGCCTCCGA
ATAATCCGTAAAACGTCTTCAATCCCGAGACTGCACAACCTCGTGTTGCC
TGTACCCCGTTCGACCTTTACAATACCTTTCGCGACGATGCGGTCCGCAT
TCTAGCTGCGTGTAGGCTTCATCTTCTTCGCTGGCGGTTTACACAGTACA
TATTTTTCGTATTTTTCGTCTGCTTTGCCAAACCCTCAAACTTCAAGGGG
CGGGGTTTGGCCTGTGGCGGTCAGCAGCATTCCAGGACCTACGTACTTCC
CTGCAGCTTCCGGGGCAACGGGAAGTCACAGCAGCGCAGCAAACGGTGTT
GCATTCCCCAAAGAGCAACGGTTTTTGAGCAACGCAACGAGGTGAGTGGT
GATAGCTCTATCTAGCTGGGCGCTCAAGATCGTTGCGATCCCAGTTGTCT
GGTGTCCTTCAACTGTGTTTGGGCCTCAAAAGTACCTGCCCTTTTTTTTT
CTCTATTTCTGGTGTTGTCAACTGCGCGAGGTAAACATCAGTTTCTTACT
TGAAGTGTCGAACCTTCTTCAAACTAAAGCAGCCCTTCGTAACGCGGCGA
GCCATCCAGGTACCTCAGCAAGGACCACGAAAGACAGGCGAGGGGGCTGT
TTTCTCCGGGTCCAGCAATGTACGTGGGGCATGATGATGTGATGCCACTG
GCGCCACGACCGCCGCTGACGGCCCCCGGGTCAGCCCACCGCTGCCCATG
TGCAGAGGCTCCTGGAATAAGCGGGGGGGGGGGGGCAGTTGACTGTCTTC
ACCGGGGCTTGCTGCGAGCACGGAGGGCGCTTACAGCGGGGCCTCTTGGT
GGGCAGAGTGCAAGGAGGCAAGTACAAACAATATTTTGACTCCAGTATTT
GTGTCTTGGTGAAGTAGCGTGTGGGAGAGATATGGAGCATCGCCCGGGCG
AGGAGCAGCCGCACCTTGTCAACGCTGCTCTCCGAAAAAAGTGAGATACC
TATGCTATAGCATTGAGGCACAACAAGCAGCTTACTCCATACTCGAAGTA
GTTGACTGCTCTACGAGTTCGAAGACGACGTTCGCAATTCATCACCTCTT
TGCTGGTTGAACGCATGAACAAGGTAAGCCAAAGCGTCCCTTATTTTTGC
TGGTTTGACATGGTAGAATGGCAGTGATGGGGCTGCAGGACGAAAGCAAG
GTATACACTTCACGACTAGGGGCGGAAAACATCACATTGCTACTGCCTCC
GGGTGGACGATGTATTTTTACGGCATACTTCTAGACACCAAATAGTTTAA
TGAATAATTTATTTAATTATTAATTACTGAAGTTTGGTTTGGGGCAGGGA
ACTTGGAGGCTATTGTCACTAACAGTTATAAATGTTCATGTACCTGTGCC
ACAAAATTAGTCGACAAACGTGTATTCTTGAACTATAAAGGTGACTCCTA
GACCAACTTGTCTTGCCCCAATATGTGACGTCTCCAGGCGCCAGCGGGTC
TCTGGAGGTGCCGCGACCCATACCCCGTACATCGGAATCAAAGAGCGAGA
AGCCGCCGATAAACTTGTCGGAAAAGCCAAAGCAGGCGCCACGGGTGCCC
CCGTGATGCGACTCCCTATTTCCAGGAGAGGAGTACGAGAGGGTCCGGAC
GGGTGTTTCTTCACAAGGATGGGGGCCGCGTCGCCTGGACCAGCCAGACA
TTTCCCTGAATGTTCTTCCATCTCTGCTAAGGGTTGCCCGGTCTTCGCTG
CACCGGCGGCTTTAGATCCCGTGGAATGGGAACGGCAGAACAAGGTGCCG
GGGCAACCCCGTACTCCCCAACTTGTTAAGCACAACGCCGCGCGGTCCAA
GACTTCCCAAGTGCACCATCGTTGGCCCTCGTATACCCACATGGGGGACA
GGGGTAGAATCTCGGGGAAATTGGGGCAGGATAGTCCCGGACCGGGTGCT
GTCAACATTGCCGGTCACGACCCTTTCCGACCAAGCTCGTTCCTGAAAAC
GGACGTATGCCACCCACCACCGGCTTCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2127:6842..9519-

>mRNA_L-elsbetiae_contig2127.6493.1 ID=mRNA_L-elsbetiae_contig2127.6493.1|Name=mRNA_L-elsbetiae_contig2127.6493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2958bp|location=Sequence derived from alignment at L-elsbetiae_contig2127:6842..9519- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGTGTGCATTATACATACAGGTCCCGAGCTACGGCAAGGGTTGGC
ATTGTTTCGAGTGGTCAACCGCACTGGGTTGCAGATCCGCGAAGACATCG
CACTCGACTCAGAGCCCTGTGGTCGCCTCTACGCCGGAGACGTGTTCTGC
GTCAACGACTCCTCGACAGTAATACACCATCAGGGTTCTCATCGCTCCGG
GAAGCGAGGAAAACGCGGCATAGTGAGGCTCGCTCGATTGCATATGGTAG
CACCTCGCATAGGCTGGGTGAGTGGCTCGTCAAAGTGGGTTTCGAAATTT
CAGGAAGGCGGTCGGCCGGGGCCGATACCGTTGAGATCAACGCTGAGCGA
CAACTGCCCGGTGGCGATGGTGAAGCCATCGGAAGGTCGCTCAACCGCGA
GGTCTCCAACCGCTACCAAGGGTGATAGGTATCAGCCTGAGGTGCGGGGT
GAGGAAAGGTATCAAGAGGCAAGCGTGTCTACGCGTGAAGGTCCAGAGTC
GAGGGTAACTACTCCGAGGTCCAGATGGCTACACTCAAGATGCTCGTGTG
CATTATACATACAGGTCCCGAGCTACGGCAAGGGTTGGCATTGTTTCGAG
TGGTCAACCGCACTGGGTTGCAGATCCGCGAAGACATCGCACTCGACTCA
GAGCCCTGTGGTCGCCTCTACGCCGGAGACGTGTTCTGCGTCAACGACTC
CTCGACAGTAATACACCATCAGGGTTCTCATCGCTCCGGGAAGCGAGGAA
AACGCGGCATAGTGAGGCTCGCTCGATTGCATATGGTAGCACCTCGCATA
GGCTGGGTGAGTGGCTCGTCAAAGTGGGTTTCGAAATTTCAGGAAGGCGG
TCGGCCGGGGCCGATACCGTTGAGATCAACGCTGAGCGACAACTGCCCGG
TGGCGATGGTGAAGCCATCGGAAGGTCGCTCAACCGCGAGGTCTCCAACC
GCTACCAAGGGTGATAGGTATCAGCCTGAGGTGCGGGGTGAGGAAAGGTA
TCAAGAGGCAAGCGTGTCTACGCGTGAAGGTCCAGAGTCGAGGGTAACTA
CTCCGAGGTCCAGATGGCTACACTCAAGGGGCGGGGTTTGGCCTGTGGCG
GTCAGCAGCATTCCAGGACCTACGTACTTCCCTGCAGCTTCCGGGGCAAC
GGGAAGTCACAGCAGCGCAGCAAACGGTGTTGCATTCCCCAAAGAGCAAC
GGTTTTTGAGCAACGCAACGAGGGGCGGGGTTTGGCCTGTGGCGGTCAGC
AGCATTCCAGGACCTACGTACTTCCCTGCAGCTTCCGGGGCAACGGGAAG
TCACAGCAGCGCAGCAAACGGTGTTGCATTCCCCAAAGAGCAACGGTTTT
TGAGCAACGCAACGAGGTACCTCAGCAAGGACCACGAAAGACAGGCGAGG
GGGCTGTTTTCTCCGGGTCCAGCAATGTACGTGGGGCATGATGATGTGAT
GCCACTGGCGCCACGACCGCCGCTGACGGCCCCCGGGTCAGCCCACCGCT
GCCCATGTGCAGAGGCTCCTGGAATAAGCGGGGGGGGGGGGGCAGTTGAC
TGTCTTCACCGGGGCTTGCTGCGAGCACGGAGGGCGCTTACAGCGGGGCC
TCTTGGTGGGCAGAGTGCAAGGAGGCAAGTACCTCAGCAAGGACCACGAA
AGACAGGCGAGGGGGCTGTTTTCTCCGGGTCCAGCAATGTACGTGGGGCA
TGATGATGTGATGCCACTGGCGCCACGACCGCCGCTGACGGCCCCCGGGT
CAGCCCACCGCTGCCCATGTGCAGAGGCTCCTGGAATAAGCGGGGGGGGG
GGGGCAGTTGACTGTCTTCACCGGGGCTTGCTGCGAGCACGGAGGGCGCT
TACAGCGGGGCCTCTTGGTGGGCAGAGTGCAAGGAGGCAACGGGTCTCTG
GAGGTGCCGCGACCCATACCCCGTACATCGGAATCAAAGAGCGAGAAGCC
GCCGATAAACTTGTCGGAAAAGCCAAAGCAGGCGCCACGGGTGCCCCCGT
GATGCGACTCCCTATTTCCAGGAGAGGAGTACGAGAGGGTCCGGACGGGT
GTTTCTTCACAAGGATGGGGGCCGCGTCGCCTGGACCAGCCAGACATTTC
CCTGAATGTTCTTCCATCTCTGCTAAGGGTTGCCCGGTCTTCGCTGCACC
GGCGGCTTTAGATCCCGTGGAATGGGAACGGCAGAACAAGGTGCCGGGGC
AACCCCGTACTCCCCAACTTGTTAAGCACAACGCCGCGCGGTCCAAGACT
TCCCAAGTGCACCATCGTTGGCCCTCGTATACCCACATGGGGGACAGGGG
TAGAATCTCGGGGAAATTGGGGCAGGATAGTCCCGGACCGGGTGCTGTCA
ACATTGCCGGTCACGACCCTTTCCGACCAAGCTCGTTCCTGAAAACGGAC
GTATGCCACCCACCACCGGCTTCCCGGGTCTCTGGAGGTGCCGCGACCCA
TACCCCGTACATCGGAATCAAAGAGCGAGAAGCCGCCGATAAACTTGTCG
GAAAAGCCAAAGCAGGCGCCACGGGTGCCCCCGTGATGCGACTCCCTATT
TCCAGGAGAGGAGTACGAGAGGGTCCGGACGGGTGTTTCTTCACAAGGAT
GGGGGCCGCGTCGCCTGGACCAGCCAGACATTTCCCTGAATGTTCTTCCA
TCTCTGCTAAGGGTTGCCCGGTCTTCGCTGCACCGGCGGCTTTAGATCCC
GTGGAATGGGAACGGCAGAACAAGGTGCCGGGGCAACCCCGTACTCCCCA
ACTTGTTAAGCACAACGCCGCGCGGTCCAAGACTTCCCAAGTGCACCATC
GTTGGCCCTCGTATACCCACATGGGGGACAGGGGTAGAATCTCGGGGAAA
TTGGGGCAGGATAGTCCCGGACCGGGTGCTGTCAACATTGCCGGTCACGA
CCCTTTCCGACCAAGCTCGTTCCTGAAAACGGACGTATGCCACCCACCAC
CGGCTTCC
back to top