mRNA_L-elsbetiae_contig2125.6484.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2125.6484.1
Unique NamemRNA_L-elsbetiae_contig2125.6484.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2125.6484.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.280e-16
Identity = 41/46 (89.13%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  106 IPGDIHQENLSRVSAMSPEEIAEAQQEIRAALPPGALEMLMRRGRG 243
            IPGDIH+ENLSR+SAMSP+EIA+AQQEIRAALPPGALEML+RRGRG
Sbjct:  270 IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 315
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BLAST of mRNA_L-elsbetiae_contig2125.6484.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-16
Identity = 41/46 (89.13%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  106 IPGDIHQENLSRVSAMSPEEIAEAQQEIRAALPPGALEMLMRRGRG 243
            IPGDIH+ENLSR+SAMSP+EIA+AQQEIRAALPPGALEML+RRGRG
Sbjct:  265 IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2125.6484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHK5_9PHAE1.280e-1689.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHI7_ECTSI1.340e-1689.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2125contigL-elsbetiae_contig2125:3517..3845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue7.5e-15
Seed eggNOG ortholog2880.D8LHI7
Preferred nameRPAP1
KEGG koko:K19496,ko:K20826
KEGG TC1.A.17.1.1,1.A.17.1.22
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030154,GO:0030880,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048869,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription by RNA polymerase II
EggNOG OGsKOG4732@1,KOG4732@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko04040
Exons1
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.3629165-CDS-L-elsbetiae_contig2125:3516..38431622815870.3629165-CDS-L-elsbetiae_contig2125:3516..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2125 3517..3843 +
1691683158.0182219-CDS-L-elsbetiae_contig2125:3516..38431691683158.0182219-CDS-L-elsbetiae_contig2125:3516..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2125 3517..3843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2125.6484.1prot_L-elsbetiae_contig2125.6484.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2125 3517..3843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2125.6484.1

>prot_L-elsbetiae_contig2125.6484.1 ID=prot_L-elsbetiae_contig2125.6484.1|Name=mRNA_L-elsbetiae_contig2125.6484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
ATTAAAPAASEGTAVGSRGCAKGGTASRGGGRASGIPGDIHQENLSRVSA
MSPEEIAEAQQEIRAALPPGALEMLMRRGRGEGKRPAAETSTKPAAAATA
AEHPAGVVG
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mRNA from alignment at L-elsbetiae_contig2125:3517..3845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2125.6484.1 ID=mRNA_L-elsbetiae_contig2125.6484.1|Name=mRNA_L-elsbetiae_contig2125.6484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=329bp|location=Sequence derived from alignment at L-elsbetiae_contig2125:3517..3845+ (Laminarionema elsbetiae ELsaHSoW15)
GCCACTACTGCCGCCGCTCCCGCCGCTTCAGAAGGAACCGCGGTGGGCAG
CAGAGGGTGCGCCAAGGGGGGCACCGCCAGCCGCGGCGGCGGCCGGGCTA
GCGGCATCCCCGGCGACATTCACCAGGAGAACCTGTCGCGGGTCTCGGCG
ATGTCGCCGGAAGAGATAGCGGAGGCGCAGCAGGAGATCCGCGCGGCCCT
GCCTCCGGGGGCGCTCGAGATGCTGATGCGGCGGGGACGGGGAGAAGGCA
AGCGGCCGGCCGCCGAGACGAGCACGAAGCCGGCCGCGGCGGCGACAGCA
GCAGAGCATCCGGCGGGAGTTGTTGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2125:3517..3845+

>mRNA_L-elsbetiae_contig2125.6484.1 ID=mRNA_L-elsbetiae_contig2125.6484.1|Name=mRNA_L-elsbetiae_contig2125.6484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig2125:3517..3845+ (Laminarionema elsbetiae ELsaHSoW15)
GCCACTACTGCCGCCGCTCCCGCCGCTTCAGAAGGAACCGCGGTGGGCAG
CAGAGGGTGCGCCAAGGGGGGCACCGCCAGCCGCGGCGGCGGCCGGGCTA
GCGGCATCCCCGGCGACATTCACCAGGAGAACCTGTCGCGGGTCTCGGCG
ATGTCGCCGGAAGAGATAGCGGAGGCGCAGCAGGAGATCCGCGCGGCCCT
GCCTCCGGGGGCGCTCGAGATGCTGATGCGGCGGGGACGGGGAGAAGGCA
AGCGGCCGGCCGCCGAGACGAGCACGAAGCCGGCCGCGGCGGCGACAGCA
GCAGAGCATCCGGCGGGAGTTGTTGGGGCCACTACTGCCGCCGCTCCCGC
CGCTTCAGAAGGAACCGCGGTGGGCAGCAGAGGGTGCGCCAAGGGGGGCA
CCGCCAGCCGCGGCGGCGGCCGGGCTAGCGGCATCCCCGGCGACATTCAC
CAGGAGAACCTGTCGCGGGTCTCGGCGATGTCGCCGGAAGAGATAGCGGA
GGCGCAGCAGGAGATCCGCGCGGCCCTGCCTCCGGGGGCGCTCGAGATGC
TGATGCGGCGGGGACGGGGAGAAGGCAAGCGGCCGGCCGCCGAGACGAGC
ACGAAGCCGGCCGCGGCGGCGACAGCAGCAGAGCATCCGGCGGGAGTTGT
TGGG
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