prot_L-elsbetiae_contig2125.6484.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2125.6484.1
Unique Nameprot_L-elsbetiae_contig2125.6484.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length109
Homology
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BLAST of mRNA_L-elsbetiae_contig2125.6484.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.280e-16
Identity = 41/46 (89.13%), Postives = 46/46 (100.00%), Query Frame = 0 
Query:   36 IPGDIHQENLSRVSAMSPEEIAEAQQEIRAALPPGALEMLMRRGRG 81
            IPGDIH+ENLSR+SAMSP+EIA+AQQEIRAALPPGALEML+RRGRG
Sbjct:  270 IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 315
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BLAST of mRNA_L-elsbetiae_contig2125.6484.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-16
Identity = 41/46 (89.13%), Postives = 46/46 (100.00%), Query Frame = 0 
Query:   36 IPGDIHQENLSRVSAMSPEEIAEAQQEIRAALPPGALEMLMRRGRG 81
            IPGDIH+ENLSR+SAMSP+EIA+AQQEIRAALPPGALEML+RRGRG
Sbjct:  265 IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2125.6484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHK5_9PHAE1.280e-1689.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHI7_ECTSI1.340e-1689.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013930RNA polymerase II-associated protein 1, N-terminalPFAMPF08621RPAP1_Ncoord: 39..79
e-value: 1.8E-16
score: 59.6
IPR039913RNA polymerase II-associated protein RPAP1/Rba50PANTHERPTHR21483FAMILY NOT NAMEDcoord: 39..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2125contigL-elsbetiae_contig2125:3517..3843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2125.6484.1mRNA_L-elsbetiae_contig2125.6484.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2125 3517..3845 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2125.6484.1 ID=prot_L-elsbetiae_contig2125.6484.1|Name=mRNA_L-elsbetiae_contig2125.6484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
ATTAAAPAASEGTAVGSRGCAKGGTASRGGGRASGIPGDIHQENLSRVSA
MSPEEIAEAQQEIRAALPPGALEMLMRRGRGEGKRPAAETSTKPAAAATA
AEHPAGVVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013930RNA_pol_II_AP1_N
IPR039913RPAP1/Rba50