mRNA_L-elsbetiae_contig21245.6483.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21245.6483.1
Unique NamemRNA_L-elsbetiae_contig21245.6483.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 8.490e-100
Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGRAKVITVDGVE 483
            + GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMV F LPGREERLRMVNLYMK YLLDPPG+AKVI VDG+E
Sbjct:  359 LYGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVRFDLPGREERLRMVNLYMKNYLLDPPGKAKVIRVDGIE 518          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)

HSP 1 Score: 285 bits (728), Expect = 1.780e-90
Identity = 139/160 (86.88%), Postives = 148/160 (92.50%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGRAKVITVDGVE 483
            + GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHK+FDWAQAS KGLLLFVDEADAFLRRR+TE ISEDLRNALNAFLYRTGE+TDKFMLVYASNQPEQFDWAVNDRIDEMVPF LPGR+ER+RM+NLYM  +LL   G+AK I V GVE
Sbjct:  345 LYGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKLFDWAQASNKGLLLFVDEADAFLRRRSTERISEDLRNALNAFLYRTGEATDKFMLVYASNQPEQFDWAVNDRIDEMVPFELPGRDERMRMINLYMNKFLLAKTGKAKTIVVQGVE 504          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A7S2Y4I1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4I1_9STRA)

HSP 1 Score: 261 bits (667), Expect = 4.960e-86
Identity = 130/160 (81.25%), Postives = 142/160 (88.75%), Query Frame = 1
Query:   10 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGRAK--VITVDGVE 483
            GPPGTGKTLFAKGLA+HSGLEYAI+TGGD+APLGRDAVTE+HK+FDWA AS KGLLLFVDEADAFLRRR+ E ISEDLRNALNAFLYRTGE+T KFMLVYASNQP+QFDWA+NDRIDEMV F LPG EER RMV+LYMK YLLD    AK   ITV+ +E
Sbjct:    1 GPPGTGKTLFAKGLAKHSGLEYAILTGGDVAPLGRDAVTEIHKLFDWANASNKGLLLFVDEADAFLRRRSVEHISEDLRNALNAFLYRTGEATGKFMLVYASNQPDQFDWAINDRIDEMVEFQLPGLEERKRMVSLYMKKYLLDQQDAAKGRAITVEDIE 160          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A7S2WW12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW12_9STRA)

HSP 1 Score: 251 bits (641), Expect = 4.160e-82
Identity = 124/171 (72.51%), Postives = 143/171 (83.63%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDP--------PGRAKVITVDGVEVRN 492
            + GPPGTGKTLFAKGLARHSGLEYAI+TGGD+APLGRDAVTE+HKVF+WA AS +GLLLF+DE+DAFLR+R+TE +SEDLRNALNAFLYRTGE T+KFMLVYASNQPEQFDWA+NDRIDEMV F LP +EER+RM+ LYM  YL           P   K++ V+GVE  N
Sbjct:   11 LYGPPGTGKTLFAKGLARHSGLEYAILTGGDVAPLGRDAVTEIHKVFEWANASNRGLLLFIDESDAFLRKRSTEAMSEDLRNALNAFLYRTGEPTNKFMLVYASNQPEQFDWAINDRIDEMVEFALPSKEERVRMIQLYMDKYLYRSGEGGGFFSPASTKIL-VNGVEDSN 180          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.730e-79
Identity = 123/163 (75.46%), Postives = 140/163 (85.89%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGRAK-----VITVDG 477
            + GPPGTGKT+FAKGLAR SGLEYAI+TGGD+APLGRDAVTE+HKVFDWA  S+KGLLLF+DE+DAFLR+R+TE ISEDLRNALNAFLYRTGE TDKFMLVYASNQPEQFDWAVNDRIDEMV F LPG EER RM+++Y+  YL D  G +      V++ DG
Sbjct:  277 LYGPPGTGKTMFAKGLARSSGLEYAILTGGDVAPLGRDAVTEIHKVFDWANTSKKGLLLFIDESDAFLRKRSTENISEDLRNALNAFLYRTGEPTDKFMLVYASNQPEQFDWAVNDRIDEMVEFDLPGLEERRRMIDMYLSKYLRDAEGSSSGAKKIVVSFDG 439          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A7S3HKW4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKW4_9STRA)

HSP 1 Score: 248 bits (634), Expect = 4.740e-79
Identity = 115/160 (71.88%), Postives = 140/160 (87.50%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGRAKVITVDGVE 483
            + GPPGTGKT+FAKGLAR  GL YAIMTGGD+APLG+DAVTE+HK+FDWA  + KG+L+FVDEADAFLR+R+TE ISED+RNALNAFLYRTGE++ KFM+VYASNQPEQFDWA+NDRID+MV F LP  +ER+RM++ YM  +LL PP  +K ITV+GV+
Sbjct:  152 LHGPPGTGKTMFAKGLARECGLHYAIMTGGDVAPLGKDAVTEIHKLFDWANTTNKGVLIFVDEADAFLRKRSTERISEDMRNALNAFLYRTGEASYKFMIVYASNQPEQFDWAINDRIDDMVEFRLPSFDERVRMISQYMDSFLLHPPAGSKTITVEGVD 311          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A4D9D134_9STRA (AAA domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D134_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.840e-78
Identity = 119/160 (74.38%), Postives = 146/160 (91.25%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPG-RAKVITVDGV 480
            + GPPGTGKTLFAKGLA +SGL+YAI+TGGD+APLG++AVTE+HKVFDWA  +RKG+LLFVDEADAFLRRR+TE +SE+LRNALNAFLYRTGE++DKFM+V+ASNQPEQFDWA+NDRIDEMV F LPG EERL MV +Y++ Y+L+PP  +A+ ITV+G+
Sbjct:  350 LHGPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIHKVFDWAGTTRKGVLLFVDEADAFLRRRSTEHMSEELRNALNAFLYRTGEASDKFMVVFASNQPEQFDWAINDRIDEMVDFNLPGEEERLEMVTIYLEKYVLNPPSTKARPITVEGI 509          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A7S2WET7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WET7_9STRA)

HSP 1 Score: 240 bits (612), Expect = 3.690e-76
Identity = 113/160 (70.62%), Postives = 135/160 (84.38%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGRAKVITVDGVE 483
            + GPPGTGKTLFAK LA++SG+EYAI+TGGD+APLGRDAVTE+HKVF+WA  SR+GLLLFVDE+DAFLR+R+T+ ISED+RNALNAFL+RTGE++DKFM+VYASNQPEQFDWA+NDRIDEMV F LPG EER RM+  YM   L  P     +   D V+
Sbjct:  115 LYGPPGTGKTLFAKALAKNSGMEYAILTGGDVAPLGRDAVTEIHKVFEWANTSRRGLLLFVDESDAFLRKRSTQYISEDMRNALNAFLFRTGEASDKFMIVYASNQPEQFDWAINDRIDEMVEFALPGFEERRRMIAYYMHSLLSSPTQATPITIADDVD 274          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A836C9L2_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L2_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.420e-75
Identity = 120/160 (75.00%), Postives = 139/160 (86.88%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGRAKVITVDGVE 483
            + GPPGTGKTLFAKGLA+ SG++YAIMTGGDIAPLGR+AV+EMHKVFDWAQ SR+G++LFVDEADAFLRRR+TE ISED+RNALNAFLYRTGE+TD+FM+VYASNQPEQFD A+NDRIDE+VPF LPG EER RM++ YM  YLL+       I   GVE
Sbjct:  314 LYGPPGTGKTLFAKGLAQASGMDYAIMTGGDIAPLGREAVSEMHKVFDWAQTSRRGVVLFVDEADAFLRRRSTEVISEDMRNALNAFLYRTGEATDRFMVVYASNQPEQFDDAINDRIDELVPFDLPGVEERRRMLDSYMLKYLLEAHAARSGIAALGVE 473          
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Match: A0A7S1G0B3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0B3_9STRA)

HSP 1 Score: 243 bits (620), Expect = 9.400e-75
Identity = 120/160 (75.00%), Postives = 137/160 (85.62%), Query Frame = 1
Query:    4 MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGR-AKVITVDGV 480
            + GPPGTGKTLFAKGLARHSGLEYAI+TGGDIAPLGRDAVTE+HK+FDWA+ SR+GLLLFVDEADAFL+ R T  ISED RNALNAFLYRTG  TDKFM+VYASNQP QFD AV DRIDEMV F LPG +ER RM+ +Y++ YLL+P GR AK +T + +
Sbjct:  351 LHGPPGTGKTLFAKGLARHSGLEYAILTGGDIAPLGRDAVTELHKLFDWAKTSRRGLLLFVDEADAFLQSRETNQISEDQRNALNAFLYRTGTETDKFMMVYASNQPSQFDPAVTDRIDEMVEFDLPGSDERHRMIVMYIERYLLNPSGRWAKKVTTEDI 510          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21245.6483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJ37_9PHAE8.490e-10095.00AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YR91_9STRA1.780e-9086.88AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2Y4I1_9STRA4.960e-8681.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WW12_9STRA4.160e-8272.51Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2D4S5_9STRA1.730e-7975.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3HKW4_9STRA4.740e-7971.88Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9D134_9STRA1.840e-7874.38AAA domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2WET7_9STRA3.690e-7670.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C9L2_9STRA1.420e-7575.00AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S1G0B3_9STRA9.400e-7575.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21245contigL-elsbetiae_contig21245:488..2144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.3e-82
Seed eggNOG ortholog2880.D8LFV8
Preferred nameATAD3A
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons3
Model size507
Cds size504
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21245.6483.1prot_L-elsbetiae_contig21245.6483.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21245 488..2141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.29358-CDS-L-elsbetiae_contig21245:487..7061622815870.29358-CDS-L-elsbetiae_contig21245:487..706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21245 488..706 -
1691683157.974916-CDS-L-elsbetiae_contig21245:487..7061691683157.974916-CDS-L-elsbetiae_contig21245:487..706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21245 488..706 -
1622815870.3075554-CDS-L-elsbetiae_contig21245:1373..15051622815870.3075554-CDS-L-elsbetiae_contig21245:1373..1505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21245 1374..1505 -
1691683157.9880853-CDS-L-elsbetiae_contig21245:1373..15051691683157.9880853-CDS-L-elsbetiae_contig21245:1373..1505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21245 1374..1505 -
1622815870.3199136-CDS-L-elsbetiae_contig21245:1988..21411622815870.3199136-CDS-L-elsbetiae_contig21245:1988..2141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21245 1989..2141 -
1691683157.999005-CDS-L-elsbetiae_contig21245:1988..21411691683157.999005-CDS-L-elsbetiae_contig21245:1988..2141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21245 1989..2141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.3310218-UTR-L-elsbetiae_contig21245:2141..21441622815870.3310218-UTR-L-elsbetiae_contig21245:2141..2144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21245 2142..2144 -
1691683158.0086086-UTR-L-elsbetiae_contig21245:2141..21441691683158.0086086-UTR-L-elsbetiae_contig21245:2141..2144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21245 2142..2144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21245.6483.1

>prot_L-elsbetiae_contig21245.6483.1 ID=prot_L-elsbetiae_contig21245.6483.1|Name=mRNA_L-elsbetiae_contig21245.6483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MTGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWA
QASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFML
VYASNQPEQFDWAVNDRIDEMVPFGLPGREERLRMVNLYMKGYLLDPPGR
AKVITVDGVEVRNRKPSV
back to top

mRNA from alignment at L-elsbetiae_contig21245:488..2144-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21245.6483.1 ID=mRNA_L-elsbetiae_contig21245.6483.1|Name=mRNA_L-elsbetiae_contig21245.6483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1657bp|location=Sequence derived from alignment at L-elsbetiae_contig21245:488..2144- (Laminarionema elsbetiae ELsaHSoW15)
CAAATGACAGGACCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCT GGCACGCCATTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGACATCG CGCCCCTTGGGAGGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGG GCTCAGGTATTGTACTATCTTATAGTACAGAGGCTCCGTTTTGTTTTTTG CCGTTTCCCCGTGGAATGTATGTGTATTCCGTGGATGGGTGTAGCGTATC GTTTTATTTTTTGCTGCTTTTGCCCGTGAAATCTATGTAGTTTATGTAGC GTGATACGTTTTGATTGTTTTGCGCTAAAATATGCGAATACCACGAGCAG AAAATATTGTACGTGGTGCTTAAAAATACGTTCCGTATCCCACGCTTTGG TAGCATCACTTCTACAACTCATTTTCCCTACCTTGATTTCCGTCTTAAGC CTTTTTTTTGTGTGTTGACGGTTTGCATGTATACATACATATAGGCATGA ACCGAAGACGGAGTGTGTTTTGGGTTCTATTGTACTGAGAACTGAAGAGA TTGACATTTATTTCTTTGTGCCTGCCTGCCCGTGCCCGTGCCCGTGCCCG TCTGTCTGTCTGTCCGTCTGTCTGCCCGTCTATCTGTAGGCGAGCCGCAA GGGCCTTCTCTTGTTCGTCGACGAGGCGGACGCGTTCCTGCGGCGGCGCA ACACGGAGACCATCAGCGAGGACCTGCGCAACGCCCTGAACGCCTTCCTC TACCGCACGGGAGAGTCCACGGTGAGAGCTACATACGGCAGTTCGCTCAT CCCATCGCATCAGATCATCACAGCGTGCATGAAACGCGAAAAAAATACAT TAGAGACGTCCTTGTATCACTGTATCGTGGTGGTGAAGCTGTGATGGTTG GAGAGTCTGCGTATAGTTTTGGTCCGTTGTACACCTGCATAAAGTTACGG TTGCGGTAGAAAGAAGTCAAATCCGGCTTGGAAGCCAGTAGTGACAATGA ACGGTCACTGGACAGTCCGGCTTGGAAGCCAGTAGTGATCATGAACGGTC ACTGGGCAGTCATGTGTGTCAGTCAGTCCGGCTTGGAAGCCAGTAGTGAC AATGAACGGTCACTGGACAGTCATATATGTCACTGGACTGCCGGGCGAAA ATTCACGCGTATGTCCATGTCTAGGGTGCCGTATAACGGCTTCATGTTCT TCTTGCTCGTGGTTGCCGTCCTTCTTATTGTCTCCCCCACCCCCTCTTCG CCCTCCCCATGTCCGCATTCCTGTCTTGCGTCAGATGTGCCCATTTTGCC GTCAACGCAGCACGGAAAGCTTACGTTTATTCATCGGTGCCGCTTTGTCT CGTTTGTCTCGTTTGCTTTTTCTTTTATGGGTTGTGCTGCACAAACGCCA TGTGATTCCATACATATATATATCGCAAACGCGCACAGGACAAGTTTATG CTGGTGTACGCGTCGAACCAGCCGGAGCAGTTCGACTGGGCGGTAAACGA CCGGATCGACGAGATGGTGCCCTTCGGCCTCCCCGGCCGCGAAGAGCGGC TGCGCATGGTGAACCTCTACATGAAGGGCTACCTCCTGGACCCTCCCGGC AGGGCCAAGGTCATCACGGTGGACGGGGTGGAGGTGAGAAATAGGAAACC AAGCGTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig21245:488..2144-

>mRNA_L-elsbetiae_contig21245.6483.1 ID=mRNA_L-elsbetiae_contig21245.6483.1|Name=mRNA_L-elsbetiae_contig21245.6483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig21245:488..2144- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGGACCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGC
ACGCCATTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGACATCGCGC
CCCTTGGGAGGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGGGCT
CAGATGACAGGACCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCT
GGCACGCCATTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGACATCG
CGCCCCTTGGGAGGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGG
GCTCAGGCGAGCCGCAAGGGCCTTCTCTTGTTCGTCGACGAGGCGGACGC
GTTCCTGCGGCGGCGCAACACGGAGACCATCAGCGAGGACCTGCGCAACG
CCCTGAACGCCTTCCTCTACCGCACGGGAGAGTCCACGGCGAGCCGCAAG
GGCCTTCTCTTGTTCGTCGACGAGGCGGACGCGTTCCTGCGGCGGCGCAA
CACGGAGACCATCAGCGAGGACCTGCGCAACGCCCTGAACGCCTTCCTCT
ACCGCACGGGAGAGTCCACGGACAAGTTTATGCTGGTGTACGCGTCGAAC
CAGCCGGAGCAGTTCGACTGGGCGGTAAACGACCGGATCGACGAGATGGT
GCCCTTCGGCCTCCCCGGCCGCGAAGAGCGGCTGCGCATGGTGAACCTCT
ACATGAAGGGCTACCTCCTGGACCCTCCCGGCAGGGCCAAGGTCATCACG
GTGGACGGGGTGGAGGTGAGAAATAGGAAACCAAGCGTCGACAAGTTTAT
GCTGGTGTACGCGTCGAACCAGCCGGAGCAGTTCGACTGGGCGGTAAACG
ACCGGATCGACGAGATGGTGCCCTTCGGCCTCCCCGGCCGCGAAGAGCGG
CTGCGCATGGTGAACCTCTACATGAAGGGCTACCTCCTGGACCCTCCCGG
CAGGGCCAAGGTCATCACGGTGGACGGGGTGGAGGTGAGAAATAGGAAAC
CAAGCGTC
back to top