mRNA_L-elsbetiae_contig21233.6478.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21233.6478.1
Unique NamemRNA_L-elsbetiae_contig21233.6478.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Match: A0A6H5KRZ0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.050e-27
Identity = 71/126 (56.35%), Postives = 87/126 (69.05%), Query Frame = 3 
Query:  702 PCPVGVTTLPVSSTSEASELSEALLCSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAVVDGGDEVQLFVVDAGSSLQLSGLSIQRGVASDGGAVEVRDSSHLTAIDCSFSNNSGGE 1079
            PC  GVT L VSST+EA EL+  L CSGAG+FEVEW GEV+VT T +VS  TSLKITGS       AV+DGG  VQLFVV+ GS L+L  +S+ R   S G AV+  +S  +TA DC+FS+N+G  
Sbjct:   37 PCADGVTALSVSSTAEALELTNELECSGAGDFEVEWSGEVVVTKTFAVSTGTSLKITGS---IFDGAVIDGGGAVQLFVVNDGSQLELDSVSVVR---SFGTAVDASES-QVTATDCTFSSNNGSS 155
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BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.240e-24
Identity = 77/160 (48.12%), Postives = 102/160 (63.75%), Query Frame = 3 
Query:  648 LFQACALLLSVLGV--TMSAPCPVGVTTLPVSSTSEASELSEALLCSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAVVDGGDEVQLFVVDAGSSLQLSGLSIQRGVAS--------DGGAVEVR-DSSHLTAIDCSFSNNSGGEHCGRL 1094
            L+ + A LL ++G+    +A C V V    VS+T EASELSEALLCSGAGEFEVEW GEVL+   I +SN + +K+TG+ +    +AV+DGGD V LF V+ GS+L+L  LS+ RGVA+         GGAV +R D   LTA  CSF  N+  +  G +
Sbjct:    3 LYASLAALLGMVGMPHAQAATCSVAVDARVVSTTEEASELSEALLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVTGASA---GEAVIDGGDAVVLFNVNDGSTLELDALSLVRGVATYTATYSYGGGGAVILRSDDCILTASSCSFIGNNAIDSGGAI 159
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BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-17
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 3 
Query:  648 LFQACALLLSVLGVTMS-APCPVGVTTLPVSSTSEASELSEALL-CSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAVVDGGDEVQLFVVDAGSSLQLSGLSIQRGVASDGGAVEVRDSSHLTAID 1049
            + + C  LLS++G+  S + C  G+TTL VS+T+EA ELS++L  C+G+GEFEV W G VL++ TI+V N T+L + G   +    AV+DGGD + LF V  GS L L G+S+  G   + G V +  SS L A +
Sbjct:    4 VLKTCVSLLSIVGLAKSQSSCSEGITTLNVSTTAEALELSDSLNNCAGSGEFEVNWSGNVLLSQTITVQNRTALTVRG---VGAEAAVIDGGDAISLFHVFNGSVLMLDGVSLIGGSGVESGGVGLCCSSTLLAAN 136
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BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.540e-15
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 3 
Query:  705 CPVGVTTLPVSSTSEASELSEALLCSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAVVDGGDEVQLFVVDAGSSLQLSGLSIQRGVASDGGAVEVRDSSHLTAIDCSFSNNSGGEHCGRL 1094
            C V  +   VS T ++++L+ ++LCS  G+F V+W  EV VT TI VS+ TSL ITG+     P A+ DGG   QLFVV+ GS+L LS +++  G A  GGA+   DSS   + + SF++N    + G +
Sbjct:  220 CSVVTSFRTVSRTEDSADLANSVLCSN-GDFIVQWDEEVFVTATIRVSDGTSLNITGTG----PGAIADGGGSTQLFVVEGGSTLHLSDMTLSNGNALSGGAISAADSSVSFSGNTSFNSNFANFYGGAI 344
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BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.960e-14
Identity = 62/182 (34.07%), Postives = 96/182 (52.75%), Query Frame = 3 
Query:  546 IRPQTVDETGIVPKEHTG------KAMDILAWSSARSNRNLFQAC--ALLLSVLGVTMSAPCPVGVTTLPVSSTSEASELSEALLCSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAVVDGGDEVQLFVVDAGSSLQLSGLSIQRGVASDGGAVEVRDSSHLTAIDCSFSNN 1067
            +  Q V   G+V  +  G      +++ +    ++R    LFQA     L++V     + PC +  +   V+S+ +A  L+  L CS  G+F V+W+GEV+VT TI V+N TSL ITG  S     A  +G    QLFVV+ GSS+  + ++   G AS GGA+ V +SS   +   +F+ N
Sbjct:   15 VHVQRVRVLGVVHDQPVGHLHLRKRSLAVFVRRASRLQMGLFQALNVGFLVAVATAQATLPCSLDTSLWTVASSEDAVTLATLLRCSD-GDFAVQWVGEVIVTETIRVTNGTSLNITGDGS----GATANGDHTTQLFVVEGGSSMHCTDMTFANGNASSGGAMFVGESSVRFSGATAFTGN 191
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BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.380e-10
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 3 
Query:  705 CPVGVTTLPVSSTSEASELSEALLCSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAVVDGGDEVQLFVVDAGSSLQLSGLSIQRGVASDGGAVEVRDSSHLTAIDCSFSNNS 1070
            C +  +T  + +T +A+ L+ AL     G   V W+GEV+V  TI V+N  SL ITG    A P AV DG +  QLF VD GS L LSG++I  G A+ GGA+        +  D SFS N+
Sbjct:   25 CSLDASTFIMDTTDQATLLATALGFLDGG-LSVCWVGEVIVADTIRVTNGKSLNITG----AGPGAVADGQNVTQLFYVDGGSRLHLSGMAIAHGSAAYGGAI------FASRSDVSFSGNT 135
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BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Match: A0A6H5JRC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.760e-8
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 3 
Query:  624 SSARSNRNLFQACALLLSVLGVTMS-APCPVGVTTLPVSSTSEASELS--EALLCSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAVVDGGD 920
            ++AR+   +   C  LLS++ +  S + C  G+ TLPVS+T++   L+      C+G+GEFEV W G VL++  I+V N T L + G   +    AV+D GD
Sbjct:    8 TAARATSTVLNTCVSLLSIVELAKSQSSCSEGIITLPVSTTAKDWNLATRSTTACTGSGEFEVNWSGNVLLSQIITVQNRTVLTVRG---VGAEAAVIDEGD 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21233.6478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KRZ0_9PHAE6.050e-2756.35Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JWI3_9PHAE2.240e-2448.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF6_ECTSI2.800e-1744.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1E0_ECTSI2.540e-1541.54EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7FM10_ECTSI3.960e-1434.07Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
A0A6H5KX12_9PHAE4.380e-1041.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRC8_9PHAE4.760e-837.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21233contigL-elsbetiae_contig21233:729..2145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue6.9e-10
Seed eggNOG ortholog2880.D7FV90
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1417
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21233.6478.1prot_L-elsbetiae_contig21233.6478.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21233 1334..1864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.0519316-UTR-L-elsbetiae_contig21233:728..13331622815870.0519316-UTR-L-elsbetiae_contig21233:728..1333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21233 729..1333 +
1691683157.8850179-UTR-L-elsbetiae_contig21233:728..13331691683157.8850179-UTR-L-elsbetiae_contig21233:728..1333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21233 729..1333 +
1622815870.0807767-UTR-L-elsbetiae_contig21233:1864..21451622815870.0807767-UTR-L-elsbetiae_contig21233:1864..2145Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21233 1865..2145 +
1691683157.902215-UTR-L-elsbetiae_contig21233:1864..21451691683157.902215-UTR-L-elsbetiae_contig21233:1864..2145Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21233 1865..2145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.0644612-CDS-L-elsbetiae_contig21233:1333..18641622815870.0644612-CDS-L-elsbetiae_contig21233:1333..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21233 1334..1864 +
1691683157.8939836-CDS-L-elsbetiae_contig21233:1333..18641691683157.8939836-CDS-L-elsbetiae_contig21233:1333..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21233 1334..1864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21233.6478.1

>prot_L-elsbetiae_contig21233.6478.1 ID=prot_L-elsbetiae_contig21233.6478.1|Name=mRNA_L-elsbetiae_contig21233.6478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MDILAWSSARSNRNLFQACALLLSVLGVTMSAPCPVGVTTLPVSSTSEAS
ELSEALLCSGAGEFEVEWIGEVLVTGTISVSNSTSLKITGSESIALPQAV
VDGGDEVQLFVVDAGSSLQLSGLSIQRGVASDGGAVEVRDSSHLTAIDCS
FSNNSGGEHCGRLPQLIVMFFFKWGL*
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mRNA from alignment at L-elsbetiae_contig21233:729..2145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21233.6478.1 ID=mRNA_L-elsbetiae_contig21233.6478.1|Name=mRNA_L-elsbetiae_contig21233.6478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1417bp|location=Sequence derived from alignment at L-elsbetiae_contig21233:729..2145+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGTGGGGTGGGGGCCGTGGGTCCGCGGGTGGGTTGGTCAGACTACTGC
AAGGTATTGAGCCGGTGCTGGTTGGGTTGGGTTTGGTTGGGTTGGGTTGG
GTTGGGTGTGTGCGGCTCATTATCCGCAAACTAGTACACGTACGTAGCCG
GCTCCGAGGTTACTTGGTTCAGGGAGCGGGTTTTCCCGTCGCGCGTTGTG
CACATACGGTCGTTTGTCACGCGGGGGGATTGTCCAAAACGCAAAGAAAA
AGTCGACACAGAGGATAGACACAACACACTGCTGTGGTACAAAGATGCGG
TTACTACGCAGCGACCAATGTGGGGCGCTGCTTCTAAATTTGCTCGGACC
CTCGTCCGGGCGCTGGTAAACGTGCCTGGTGTGAGTATCGGTAAGAAAAA
TAGAAAAAATATTGTTTTTGGCGGCGTTCCTCGGACCAGTCCTCGGCCAG
ACGCGACGTCTCTTTTCTGTGTGTGCGGACCAGGTGCGGACCTCAAGTAA
GTGTCCGCAGTCCCGGTCCACTCGGCCTAGGGCACGTCCAGTCGCATCAG
ACCACAAACTGTGGACGAGACCGGCATTGTGCCAAAGGAGCATACCGGCA
AGGCCATGGACATCTTGGCCTGGAGTTCAGCTCGAAGCAACAGAAATCTA
TTTCAGGCGTGCGCTCTCCTGCTCAGCGTCCTTGGCGTGACGATGTCGGC
TCCGTGTCCTGTGGGCGTGACAACTCTACCTGTGTCCAGCACCTCCGAAG
CTTCGGAACTCAGCGAAGCATTGCTGTGCTCCGGGGCAGGCGAGTTCGAG
GTGGAGTGGATTGGAGAGGTGCTGGTGACCGGTACCATATCTGTGTCCAA
TAGCACCTCGTTGAAGATCACCGGCAGCGAGTCGATAGCGCTCCCTCAGG
CAGTCGTAGATGGCGGCGATGAGGTGCAGCTCTTTGTTGTGGATGCGGGT
TCTTCCCTACAGCTCAGCGGCCTCTCGATCCAGCGAGGGGTGGCCTCGGA
CGGAGGAGCAGTTGAAGTTAGGGACTCGTCTCATCTCACGGCGATTGACT
GCTCCTTTTCCAATAATAGCGGAGGTGAGCACTGCGGGCGCCTTCCGCAG
TTGATCGTTATGTTTTTTTTCAAATGGGGGTTATGAAAGAACCATCCATA
GATAAGCACACACTTTTGATAAGTCACGCAGATGACGGAAATGTACACTT
TTTCAAATTTGGCCATTTCGATGGTGACTTAGGCCGTTTCTTATATTGTC
GGATTCTGAAACCAAAAAAGAGCCAAATCCGATTTCGGCCCAAATCCGCC
TTCTTATACAGTCGAATTCCGCCCTTTTTCGGCTCGAAGAAATCGTATTT
TACTTTTTCGTGTCGGCTCCGATCGGAAAGTTGCGTGAAATCCGATCCGT
TTCCCAGTACGAATTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21233:729..2145+

>mRNA_L-elsbetiae_contig21233.6478.1 ID=mRNA_L-elsbetiae_contig21233.6478.1|Name=mRNA_L-elsbetiae_contig21233.6478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig21233:729..2145+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATCTTGGCCTGGAGTTCAGCTCGAAGCAACAGAAATCTATTTCA
GGCGTGCGCTCTCCTGCTCAGCGTCCTTGGCGTGACGATGTCGGCTCCGT
GTCCTGTGGGCGTGACAACTCTACCTGTGTCCAGCACCTCCGAAGCTTCG
GAACTCAGCGAAGCATTGCTGTGCTCCGGGGCAGGCGAGTTCGAGGTGGA
GTGGATTGGAGAGGTGCTGGTGACCGGTACCATATCTGTGTCCAATAGCA
CCTCGTTGAAGATCACCGGCAGCGAGTCGATAGCGCTCCCTCAGGCAGTC
GTAGATGGCGGCGATGAGGTGCAGCTCTTTGTTGTGGATGCGGGTTCTTC
CCTACAGCTCAGCGGCCTCTCGATCCAGCGAGGGGTGGCCTCGGACGGAG
GAGCAGTTGAAGTTAGGGACTCGTCTCATCTCACGGCGATTGACTGCTCC
TTTTCCAATAATAGCGGAGGTGAGCACTGCGGGCGCCTTCCGCAGTTGAT
CGTTATGTTTTTTTTCAAATGGGGGTTATGAATGGACATCTTGGCCTGGA
GTTCAGCTCGAAGCAACAGAAATCTATTTCAGGCGTGCGCTCTCCTGCTC
AGCGTCCTTGGCGTGACGATGTCGGCTCCGTGTCCTGTGGGCGTGACAAC
TCTACCTGTGTCCAGCACCTCCGAAGCTTCGGAACTCAGCGAAGCATTGC
TGTGCTCCGGGGCAGGCGAGTTCGAGGTGGAGTGGATTGGAGAGGTGCTG
GTGACCGGTACCATATCTGTGTCCAATAGCACCTCGTTGAAGATCACCGG
CAGCGAGTCGATAGCGCTCCCTCAGGCAGTCGTAGATGGCGGCGATGAGG
TGCAGCTCTTTGTTGTGGATGCGGGTTCTTCCCTACAGCTCAGCGGCCTC
TCGATCCAGCGAGGGGTGGCCTCGGACGGAGGAGCAGTTGAAGTTAGGGA
CTCGTCTCATCTCACGGCGATTGACTGCTCCTTTTCCAATAATAGCGGAG
GTGAGCACTGCGGGCGCCTTCCGCAGTTGATCGTTATGTTTTTTTTCAAA
TGGGGGTTATGA
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