mRNA_L-elsbetiae_contig2123.6477.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2123.6477.1
Unique NamemRNA_L-elsbetiae_contig2123.6477.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2123.6477.1 vs. uniprot
Match: A0A6H5L8B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.760e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:    5 ELCSQHAREGMVDVVSKRCGHQGCNKRPVYGVEGTKKA 118
            E CSQHA+ GM ++++KRCGH GC K   YG +G+ KA
Sbjct:  106 EFCSQHAKPGMTNIMTKRCGHPGCIKHRTYGKDGSSKA 143
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2123.6477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8B4_9PHAE8.760e-555.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2123contigL-elsbetiae_contig2123:16441..19032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7G985
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1589
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2123.6477.1prot_L-elsbetiae_contig2123.6477.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2123 18144..18998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.9710288-UTR-L-elsbetiae_contig2123:16440..171121622815869.9710288-UTR-L-elsbetiae_contig2123:16440..17112Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2123 16441..17112 -
1691683157.8496766-UTR-L-elsbetiae_contig2123:16440..171121691683157.8496766-UTR-L-elsbetiae_contig2123:16440..17112Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2123 16441..17112 -
1622815869.983802-UTR-L-elsbetiae_contig2123:18115..181431622815869.983802-UTR-L-elsbetiae_contig2123:18115..18143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2123 18116..18143 -
1691683157.8614187-UTR-L-elsbetiae_contig2123:18115..181431691683157.8614187-UTR-L-elsbetiae_contig2123:18115..18143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2123 18116..18143 -
1622815870.0101702-UTR-L-elsbetiae_contig2123:18998..190321622815870.0101702-UTR-L-elsbetiae_contig2123:18998..19032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2123 18999..19032 -
1691683157.8770092-UTR-L-elsbetiae_contig2123:18998..190321691683157.8770092-UTR-L-elsbetiae_contig2123:18998..19032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2123 18999..19032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.9960294-CDS-L-elsbetiae_contig2123:18143..189981622815869.9960294-CDS-L-elsbetiae_contig2123:18143..18998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2123 18144..18998 -
1691683157.8692117-CDS-L-elsbetiae_contig2123:18143..189981691683157.8692117-CDS-L-elsbetiae_contig2123:18143..18998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2123 18144..18998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2123.6477.1

>prot_L-elsbetiae_contig2123.6477.1 ID=prot_L-elsbetiae_contig2123.6477.1|Name=mRNA_L-elsbetiae_contig2123.6477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=285bp
MVDVVSKRCGHQGCNKRPVYGVEGTKKAELCSQHARKGMVDVVNKKCGHQ
GCDTKPSYGVEGTKTAELCSQHAREGMVDVVSKTCGHQGCNAKPSYGVEG
TNKREFCSQHAREGMVDVVNKRCGHQGCNTKPSYGVEGSEEYTFCARHAT
AGMVSRKGAPARSEGGGRGNGGREHERGCCELDVDAPVRGSATKKRARQA
DAVRPVSIDVKEEEEHDDGATGSCASTTTASSKRARPIGFTPLVPLAVKA
EATRKRAATHATNSSSELESESEVATETGIAVSA*
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mRNA from alignment at L-elsbetiae_contig2123:16441..19032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2123.6477.1 ID=mRNA_L-elsbetiae_contig2123.6477.1|Name=mRNA_L-elsbetiae_contig2123.6477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2592bp|location=Sequence derived from alignment at L-elsbetiae_contig2123:16441..19032- (Laminarionema elsbetiae ELsaHSoW15)
GGCTGAGCTCTGCTCTCAACACGCCAGGGAGGGGATGGTGGACGTGGTCA
GCAAGAGATGTGGGCACCAAGGGTGCAACAAGCGTCCGGTGTACGGCGTC
GAAGGCACCAAGAAGGCTGAACTCTGCTCTCAGCACGCCAGGAAGGGGAT
GGTGGACGTGGTCAACAAGAAGTGTGGCCATCAAGGGTGCGACACAAAAC
CGTCGTACGGCGTCGAAGGCACCAAGACGGCTGAGCTCTGCTCTCAGCAC
GCCAGGGAGGGGATGGTGGACGTGGTCAGCAAGACGTGTGGGCATCAAGG
GTGCAACGCAAAACCGTCGTACGGCGTCGAAGGCACCAACAAGCGGGAGT
TCTGCTCTCAGCACGCCAGGGAGGGGATGGTGGACGTGGTTAACAAGAGA
TGTGGGCACCAAGGGTGCAACACAAAACCGTCGTACGGCGTCGAAGGCTC
CGAGGAGTATACATTCTGCGCACGCCATGCCACGGCGGGGATGGTGTCTA
GGAAGGGGGCCCCGGCCCGCAGCGAAGGTGGAGGTAGGGGAAACGGTGGG
CGTGAGCATGAGCGTGGGTGTTGTGAGCTTGATGTGGATGCCCCCGTCCG
CGGATCGGCAACGAAGAAGCGAGCCCGACAGGCCGACGCCGTTCGTCCGG
TGTCCATCGATGTCAAGGAAGAGGAAGAGCACGATGACGGGGCGACGGGG
AGTTGCGCCAGCACGACCACGGCGAGCAGCAAGCGAGCCCGCCCGATAGG
TTTCACCCCCTTGGTCCCGTTGGCAGTCAAAGCAGAGGCAACACGCAAGA
GGGCGGCGACCCACGCCACGAACTCGTCCTCGGAGTTGGAGTCGGAATCG
GAGGTGGCAACCGAGACAGGAATAGCTGTCTCGGCCTAGACAAAGGGCGA
AAGCTAGCTGGCTGAAGGTGCGCTTGCAACGAGTAGTCGAGTGATCATAT
GTGGTATTGTATTCCGTAGTTGTATTTTCTATTTTGGATCTGCCAAATGA
TATTTCTCCATCCCATTTGTTTGTCTTGTGCACCATGGGCAATGCCACGA
TCGTACAGGGGGAATCACCGTCAGTGCCAGTTTCGGATTGTCTTTGGAAG
GTCAAAACTCGGTTCATCTTGGTAATTGTTTCTGCGAGATTGTGACAAGC
AATGCCCCTCAGTCACCAGCCAGGTGCCCTTGTTCTCTGGTTTTGTTGCG
TTTTCCGGCACAGTTCGCCGGAGTGTCGTCCTCATCTGCTTTCGCCTCGC
TTCATGTTCTTTTTTTGTTCTCAAATGGTGTACTTTGAAGCGTCCCGCCG
CGATGACGCTGGGTAGTTCAAACTGTTGTTGCTCTGGTATGTACCACCTC
TGTCTTCCAATAGATGTGTCCCCACGCTTATCCGCCTGCCGTTGAGCATT
GTGCTGGGATAATGATACTGTTTAAAACTGGAGCGTACCCGAAGCTACCG
CTACCGCTACGCTTGGCGGGAGGCTGAGTTTTATATTGCAGATCTGGCCC
GGGCAGGGGGGCGCGAGGGCATGCTCTGAAGCACACCCTGCTGTTGGCTG
TTCAAATGCCCCGGTGTACGTGTACACACTTGCTCGCTCTCACCGCTACA
AAGCAATTGACCAATCCCCGCATGCTTGTTTCTCGTCGTTTCAGCAATTG
ACGTGCCGGAATACAACTAGCGTGAACGACACTTGTTTTGATGCGTTTTT
ATGACAAAGCACGGCAACAACCTTAAACAATCTCCATTATTTAGCTTCTC
GAACCTTCTTGGAGTGGGGGCGTGGGCAACTCAAGTGTGGGAGGTGAAAC
TTTCACCTTGTCTCTGATGCTCTGCGTTGCGAGTATGTGAGCATCCCCTG
GACATCTCTAACCCGACTGCCGAACTCCGCCTATTCCGTTCTTGTTCCTG
CTCTTGCTGCTCTCAACCAGATGGCGTGAAGCGAGGAGGAATCCTTACTG
GCTGTGGGGATGGTATCCTGTCCTCTGTCTCACGACAGCTGATCTGCGAC
GTTGTCGTATTTGGCAGCATCTTCGCACAAGGTAGCTTTAACTTTCCGTT
TCCGCTTCGCAGAACGTTGGCTGTCGGTCGTTTTCGTAATTTAGAGCGCA
TGAATGAGTTATGTTCGCTTCTTTTCCGTGGTACCTTGTCGAGCCACCCG
TGTCGTTGGAGGAAAGAGGGTTGGTGTGGCGGTTAGGGTAGAGATGTTTG
GTAGTCGACATTTCTTGATTCCGGTGGAGTTACGAAAATTTGGGTGCTTG
CGAAGTATGTGTCGAAGTGTTACTCTCTTGAAAGCCTTGTTTATCATTGT
TATGTTAGTATTGCGTCGTCCTTGCTCGCCAGTCAGAGCGACAATCTTGT
CCCGTTTCTTAGTCGGCTGTTCTACGGCAGTTCTTGTGCTTGATTATCGA
TGGTGTTTGGGAATGAGTTTCTATGCTCTGCGTCTAAAAGATGAGGATAT
ATGTGGCGAAGTCTGTGGCCGCAGACTTTGTCTCCCACTGCTAGGGACAG
TTTGTTGTTCGGACTGATTTCAAAGTGGGAATGTCTTTTATTCATGTTGA
CCGTAATTTGATGGACGACAAAAAAAATCGCGCAAACGACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2123:16441..19032-

>mRNA_L-elsbetiae_contig2123.6477.1 ID=mRNA_L-elsbetiae_contig2123.6477.1|Name=mRNA_L-elsbetiae_contig2123.6477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1710bp|location=Sequence derived from alignment at L-elsbetiae_contig2123:16441..19032- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGACGTGGTCAGCAAGAGATGTGGGCACCAAGGGTGCAACAAGCG
TCCGGTGTACGGCGTCGAAGGCACCAAGAAGGCTGAACTCTGCTCTCAGC
ACGCCAGGAAGGGGATGGTGGACGTGGTCAACAAGAAGTGTGGCCATCAA
GGGTGCGACACAAAACCGTCGTACGGCGTCGAAGGCACCAAGACGGCTGA
GCTCTGCTCTCAGCACGCCAGGGAGGGGATGGTGGACGTGGTCAGCAAGA
CGTGTGGGCATCAAGGGTGCAACGCAAAACCGTCGTACGGCGTCGAAGGC
ACCAACAAGCGGGAGTTCTGCTCTCAGCACGCCAGGGAGGGGATGGTGGA
CGTGGTTAACAAGAGATGTGGGCACCAAGGGTGCAACACAAAACCGTCGT
ACGGCGTCGAAGGCTCCGAGGAGTATACATTCTGCGCACGCCATGCCACG
GCGGGGATGGTGTCTAGGAAGGGGGCCCCGGCCCGCAGCGAAGGTGGAGG
TAGGGGAAACGGTGGGCGTGAGCATGAGCGTGGGTGTTGTGAGCTTGATG
TGGATGCCCCCGTCCGCGGATCGGCAACGAAGAAGCGAGCCCGACAGGCC
GACGCCGTTCGTCCGGTGTCCATCGATGTCAAGGAAGAGGAAGAGCACGA
TGACGGGGCGACGGGGAGTTGCGCCAGCACGACCACGGCGAGCAGCAAGC
GAGCCCGCCCGATAGGTTTCACCCCCTTGGTCCCGTTGGCAGTCAAAGCA
GAGGCAACACGCAAGAGGGCGGCGACCCACGCCACGAACTCGTCCTCGGA
GTTGGAGTCGGAATCGGAGGTGGCAACCGAGACAGGAATAGCTGTCTCGG
CCTAGATGGTGGACGTGGTCAGCAAGAGATGTGGGCACCAAGGGTGCAAC
AAGCGTCCGGTGTACGGCGTCGAAGGCACCAAGAAGGCTGAACTCTGCTC
TCAGCACGCCAGGAAGGGGATGGTGGACGTGGTCAACAAGAAGTGTGGCC
ATCAAGGGTGCGACACAAAACCGTCGTACGGCGTCGAAGGCACCAAGACG
GCTGAGCTCTGCTCTCAGCACGCCAGGGAGGGGATGGTGGACGTGGTCAG
CAAGACGTGTGGGCATCAAGGGTGCAACGCAAAACCGTCGTACGGCGTCG
AAGGCACCAACAAGCGGGAGTTCTGCTCTCAGCACGCCAGGGAGGGGATG
GTGGACGTGGTTAACAAGAGATGTGGGCACCAAGGGTGCAACACAAAACC
GTCGTACGGCGTCGAAGGCTCCGAGGAGTATACATTCTGCGCACGCCATG
CCACGGCGGGGATGGTGTCTAGGAAGGGGGCCCCGGCCCGCAGCGAAGGT
GGAGGTAGGGGAAACGGTGGGCGTGAGCATGAGCGTGGGTGTTGTGAGCT
TGATGTGGATGCCCCCGTCCGCGGATCGGCAACGAAGAAGCGAGCCCGAC
AGGCCGACGCCGTTCGTCCGGTGTCCATCGATGTCAAGGAAGAGGAAGAG
CACGATGACGGGGCGACGGGGAGTTGCGCCAGCACGACCACGGCGAGCAG
CAAGCGAGCCCGCCCGATAGGTTTCACCCCCTTGGTCCCGTTGGCAGTCA
AAGCAGAGGCAACACGCAAGAGGGCGGCGACCCACGCCACGAACTCGTCC
TCGGAGTTGGAGTCGGAATCGGAGGTGGCAACCGAGACAGGAATAGCTGT
CTCGGCCTAG
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