mRNA_L-elsbetiae_contig21194.6459.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21194.6459.1
Unique NamemRNA_L-elsbetiae_contig21194.6459.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 9.510e-39
Identity = 76/162 (46.91%), Postives = 101/162 (62.35%), Query Frame = 1
Query:    1 VSKTVFSSKMRMVFIVGLEGTGHHLLIPVLKALCNSDGVECPSVCPIASALYRGLVDPVSAAAYQNGIERLRTEMGVLALVAERTNEDPPLYLAALNRPCR---VGAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHFG 477
            V K   SS+MR+VF+VGLEGTGHH +  VL+ +C  D V CP +C +A  LY  L  P S  AY +  +RLR EM  LA   E +  +    + +    CR    G MS+PNFNG  K LQYVD +++A EAERAG+D+R +YL RSA D+L S + H ++G
Sbjct:   99 VEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGA-CRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYG 259          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 4.090e-38
Identity = 74/160 (46.25%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 VSKTVFSSKMRMVFIVGLEGTGHHLLIPVLKALCNSDGVECPSVCPIASALYRGLVDPVSAAAYQNGIERLRTEMGVLALV-AERTNEDPPLYLAALNRPCRVGAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHFG 477
            V K   SS++R++F+VGLEGTGHH  + V    C +  V C + CPIA ALY  L  P +   Y+     LR E+  LA   AE   E        +    + G MSFPNFNG +K LQYVD ++LA EAERAG+D+R +YL RSA+ +LVS T+H H+G
Sbjct:   58 VEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYG 217          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.890e-26
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1
Query:   85 VLKALCNSDGVECPSVCPIASALYRGLVDPVSAAAYQNGIERLRTEMGVLALVAERTNEDPPLYLAALNRPCR---VGAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHFG 477
            VL+ +C  D V CP +C +A  LY  L  P S  AY +  +RLR EM  LA   E +  +    + +    CR    G MS+PNFNG  K LQYVD +++A EAERAG+D+R +YL RSA D+L S + H ++G
Sbjct:    4 VLEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGA-CRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYG 136          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: A0A7S3PJR3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJR3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.870e-16
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 1
Query:    7 KTVFSSKMRMVFIVGLEGTGHHLLIPVLKALCNSDGVEC-PSVCPI---ASALYRGLVDPVSAAA-YQNGIERLRTEMGVLALVAERTNEDPPLYLAALNRPC-------RVGAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHFGQ 480
            K  FS ++R VF++GLEGTGHH+ +P+     N    +C P +      A  +  G+    +     +  +ER+ +++       ++           LN  C        VGAMS+PNF    +     D++++A   E  GID R++ + R A DVL+STT HRHFG+
Sbjct:   12 KRAFSDQLRFVFVMGLEGTGHHMWLPIWTDCQNKSNCDCAPQIEDFTFGADQMRSGMFGAFTGKREVEQYVERVISQLPSKLAEDQKARGSDQSVTYLLNTLCVKHKHYWSVGAMSYPNFMNGCRSWSNPDVRLMAEVFESLGIDFRVMVVVRDALDVLLSTTVHRHFGR 181          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO)

HSP 1 Score: 81.6 bits (200), Expect = 3.120e-15
Identity = 62/178 (34.83%), Postives = 85/178 (47.75%), Query Frame = 1
Query:    7 KTVFSSKMRMVFIVGLEGTGHHLLIPVLKALCNSDGVECPSVCPIASALYRG------------LVDPVSA---------AAYQNGIERLRTEMGVLALVAERTNEDPPLYLAALNRPCRVGAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHFG 477
            K V  ++ R++F+ GLEG+GHHL IP+LK    +    C +   +   L+              L  P +A         A + +G  R   E+        R N   PL LA+L      G MS+PNF G  K  Q  D+++LA  AE  G+D R++ L R A  VL STT HRHFG
Sbjct:  101 KRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKAR--RCAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPL-LASLGG---CGMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHFG 272          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.570e-14
Identity = 56/163 (34.36%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    7 KTVFSSKMRMVFIVGLEGTGHHLLIPVLKALCNSDGVECP-------SVCPIASALYRGLVDPVSAAAYQNGIERLRTEMGVLALVAERTNEDPPLYLAALNRPCRVGAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHF 474
            KT  S   R+VF+ GLEGTGHH ++    +L   D +  P        +    + L  G        +  N +E +R       L     N   P  L   + PC     S+P  +GP K +QY+DL ++A  AE AGID R++YL RSAK+V+++ T HR F
Sbjct:  141 KTHVSDVFRLVFVAGLEGTGHHYVMWANASLFG-DNMNLPRRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMRR------LAEWAANLSSPGALEFFSIPC-----SYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKF 291          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: F0Y634_AURAN (PPM-type phosphatase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y634_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 5.620e-13
Identity = 59/167 (35.33%), Postives = 80/167 (47.90%), Query Frame = 1
Query:    1 VSKTVFSSKMRMVFIVGLEGTGHHLLIPVLKALCNSDGVECPSVCPIASALYRGLVDPVSAAAY--QNGIERLRTEMGVLALV-----AERTNEDPPLYLAALNRPCRV----GAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHR 468
            V KTV  +  R +FI GLEG+GHH L  +  A+C    V C     +   L+     P     Y  Q   +         A +     A R    P LYL  +N         G MS+PNF  P+K L + D++ LAT AE AG DLR++ + R A++ LVST+ HR
Sbjct:   31 VKKTV-DAPARFLFIAGLEGSGHHSLSNMF-AMCVRRRVLCRHDRELGQLLHGNRSHPTGIFVYGRQAAADIAALRKRFFARLQHLRDAPRDRGAPVLYLLNVNADGATIPDAGMMSYPNFGPPDKVLHHPDMQTLATMAEAAGADLRVLVVLRGARETLVSTSVHR 195          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: A0A7S3PR25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR25_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.060e-12
Identity = 60/171 (35.09%), Postives = 84/171 (49.12%), Query Frame = 1
Query:    7 KTVFSSKMRMVFIVGLEGTGHHLLIP-VLKALCNSD-GVECPS---VCPIASALY------RGLVDPVSAAAYQNGIERLRTEMGVLALVAERTNEDPPLYLAALNRPCRVGAM-SFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHFGQG 483
            KTVFS K+R+VF VGLEGTGHHL    V+K L N     EC     +   A   +      +G     ++ +++ G E     M  + L A        L L         G++ S+P F G  K LQ+ D+  LA  AE  GID R++ L R A+++++S   HRHF  G
Sbjct:  414 KTVFS-KLRLVFFVGLEGTGHHLWQGIVMKLLKNKQLNAECKLNDLIMHPAGGCWAPWNNGKGFFCSAASESFKTGYEMAADAM--MKLKASNATGTHMLNLVYRGWKGNCGSIASYPCFGGSEKNLQHPDVLKLAELAESIGIDFRVVLLQRKAEELVISDIWHRHFNIG 581          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.950e-10
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  304 VGAMSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHF 474
             G +S+P  NGP K  QYVDL++LA  AE  G+DLR++Y+ RSAK++L++ T HR F
Sbjct:   65 TGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGF 121          
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Match: A0A7S3LMY4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LMY4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.230e-8
Identity = 51/190 (26.84%), Postives = 85/190 (44.74%), Query Frame = 1
Query:    7 KTVFSSKMRMVFIVGLEGTGHHLLIPVLKALCNSDGVECPS-VCPI-----------ASALYRGLVDPVSAAAYQNGIER---LRTEMGVLALVAERTNEDPPLYLAALNRPCRVGA---------------------MSFPNFNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHR 468
            K  +S K R VFI+G+EGTGHH+   VL+        ECP+  CP+           A + Y+       +   ++G+++   + T+ G+L  + E   +D   + A       + +                     +S+PNF G  +  Q  D+++LA   E  G+D R++ L R A D+L+S   HR
Sbjct:  148 KQAYSDKTRFVFILGIEGTGHHMFHSVLR--------ECPTCTCPVGINGNADHGGFAVSSYKHDYGVFGSKEGKDGVKKHVNMFTD-GLLKSLEEYYKDDEGRFKATDTTTFFINSYKDEGETGRCTLWQDWSSYSEISYPNFGGRCRRWQIPDVRILAEMFESQGVDFRVVVLVRDALDLLISNAVHR 328          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21194.6459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FMV4_ECTSI9.510e-3946.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV3_ECTSI4.090e-3846.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KIA1_9PHAE1.890e-2644.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3PJR3_9STRA7.870e-1631.18Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S0A0K6_9DINO3.120e-1534.83Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A6H5JH94_9PHAE4.570e-1434.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y634_AURAN5.620e-1335.33PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S3PR25_9STRA6.060e-1235.09Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
D7G1E6_ECTSI1.950e-1052.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3LMY4_9STRA2.230e-826.84Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21194contigL-elsbetiae_contig21194:756..1241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue9.3e-11
Seed eggNOG ortholog44056.XP_009035729.1
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons1
Model size486
Cds size459
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815868.3729594-UTR-L-elsbetiae_contig21194:755..7821622815868.3729594-UTR-L-elsbetiae_contig21194:755..782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21194 756..782 +
1691683156.6656575-UTR-L-elsbetiae_contig21194:755..7821691683156.6656575-UTR-L-elsbetiae_contig21194:755..782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21194 756..782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815868.3848343-CDS-L-elsbetiae_contig21194:782..12411622815868.3848343-CDS-L-elsbetiae_contig21194:782..1241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21194 783..1241 +
1691683156.683707-CDS-L-elsbetiae_contig21194:782..12411691683156.683707-CDS-L-elsbetiae_contig21194:782..1241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21194 783..1241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21194.6459.1prot_L-elsbetiae_contig21194.6459.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21194 783..1241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21194.6459.1

>prot_L-elsbetiae_contig21194.6459.1 ID=prot_L-elsbetiae_contig21194.6459.1|Name=mRNA_L-elsbetiae_contig21194.6459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MRMVFIVGLEGTGHHLLIPVLKALCNSDGVECPSVCPIASALYRGLVDPV
SAAAYQNGIERLRTEMGVLALVAERTNEDPPLYLAALNRPCRVGAMSFPN
FNGPNKPLQYVDLKVLATEAERAGIDLRMIYLGRSAKDVLVSTTEHRHFG
QG*
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mRNA from alignment at L-elsbetiae_contig21194:756..1241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21194.6459.1 ID=mRNA_L-elsbetiae_contig21194.6459.1|Name=mRNA_L-elsbetiae_contig21194.6459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig21194:756..1241+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTCTAAAACAGTGTTCAGTTCCAAGATGCGTATGGTGTTCATTGTGGG TCTTGAGGGGACGGGGCACCACCTACTTATCCCTGTGCTGAAGGCGTTGT GTAATAGTGATGGTGTTGAATGCCCGAGTGTGTGCCCGATTGCTAGCGCC TTGTACCGGGGCTTGGTTGACCCAGTTTCGGCTGCCGCCTATCAAAACGG TATCGAAAGGCTTCGAACGGAGATGGGCGTCCTAGCCCTTGTCGCAGAGC GTACAAACGAAGATCCACCTTTATATTTGGCCGCTCTCAACCGGCCGTGC AGAGTCGGTGCAATGTCGTTTCCTAACTTTAACGGACCGAATAAGCCTTT GCAGTACGTGGACCTGAAGGTTCTTGCGACGGAGGCAGAGAGGGCAGGAA TAGACCTCCGTATGATCTATCTCGGCCGTTCGGCCAAGGACGTCTTGGTC TCCACGACCGAGCATCGGCACTTTGGGCAAGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21194:756..1241+

>mRNA_L-elsbetiae_contig21194.6459.1 ID=mRNA_L-elsbetiae_contig21194.6459.1|Name=mRNA_L-elsbetiae_contig21194.6459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig21194:756..1241+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTATGGTGTTCATTGTGGGTCTTGAGGGGACGGGGCACCACCTACT
TATCCCTGTGCTGAAGGCGTTGTGTAATAGTGATGGTGTTGAATGCCCGA
GTGTGTGCCCGATTGCTAGCGCCTTGTACCGGGGCTTGGTTGACCCAGTT
TCGGCTGCCGCCTATCAAAACGGTATCGAAAGGCTTCGAACGGAGATGGG
CGTCCTAGCCCTTGTCGCAGAGCGTACAAACGAAGATCCACCTTTATATT
TGGCCGCTCTCAACCGGCCGTGCAGAGTCGGTGCAATGTCGTTTCCTAAC
TTTAACGGACCGAATAAGCCTTTGCAGTACGTGGACCTGAAGGTTCTTGC
GACGGAGGCAGAGAGGGCAGGAATAGACCTCCGTATGATCTATCTCGGCC
GTTCGGCCAAGGACGTCTTGGTCTCCACGACCGAGCATCGGCACTTTGGG
CAAGGGTGAATGCGTATGGTGTTCATTGTGGGTCTTGAGGGGACGGGGCA
CCACCTACTTATCCCTGTGCTGAAGGCGTTGTGTAATAGTGATGGTGTTG
AATGCCCGAGTGTGTGCCCGATTGCTAGCGCCTTGTACCGGGGCTTGGTT
GACCCAGTTTCGGCTGCCGCCTATCAAAACGGTATCGAAAGGCTTCGAAC
GGAGATGGGCGTCCTAGCCCTTGTCGCAGAGCGTACAAACGAAGATCCAC
CTTTATATTTGGCCGCTCTCAACCGGCCGTGCAGAGTCGGTGCAATGTCG
TTTCCTAACTTTAACGGACCGAATAAGCCTTTGCAGTACGTGGACCTGAA
GGTTCTTGCGACGGAGGCAGAGAGGGCAGGAATAGACCTCCGTATGATCT
ATCTCGGCCGTTCGGCCAAGGACGTCTTGGTCTCCACGACCGAGCATCGG
CACTTTGGGCAAGGGTGA
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