mRNA_L-elsbetiae_contig2118.6454.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2118.6454.1
Unique NamemRNA_L-elsbetiae_contig2118.6454.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2118.6454.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.800e-19
Identity = 68/99 (68.69%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:   19 GVPPDVVSYNTAMGACIKAHQHQRALSAFEEMQAAXXXXXRETFSAXAEACACLSAGDGASGGGMGARAMEIMRTARDQGLRRPAAKAVAATLAACVGG 315
            GV PDVVSYNTAM AC +A QH RALS FE+MQAA XXXX      X   CAC    DG  GG M  RAME+MR ARDQGL+RP AKAVAATLAACVGG
Sbjct:  324 GVSPDVVSYNTAMAACNEARQHLRALSTFEDMQAAGXXXXXXXXXXXXXXCACAIP-DG--GGSMVERAMELMRMARDQGLKRPGAKAVAATLAACVGG 419
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2118.6454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8D4_9PHAE2.800e-1968.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2118contigL-elsbetiae_contig2118:4979..6722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1232
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2118.6454.1prot_L-elsbetiae_contig2118.6454.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2118 4985..6438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.7756648-UTR-L-elsbetiae_contig2118:4978..49841622815867.7756648-UTR-L-elsbetiae_contig2118:4978..4984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2118 4979..4984 +
1691683156.2490811-UTR-L-elsbetiae_contig2118:4978..49841691683156.2490811-UTR-L-elsbetiae_contig2118:4978..4984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2118 4979..4984 +
1622815867.8107607-UTR-L-elsbetiae_contig2118:6438..67221622815867.8107607-UTR-L-elsbetiae_contig2118:6438..6722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2118 6439..6722 +
1691683156.283232-UTR-L-elsbetiae_contig2118:6438..67221691683156.283232-UTR-L-elsbetiae_contig2118:6438..6722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2118 6439..6722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.785965-CDS-L-elsbetiae_contig2118:4984..50501622815867.785965-CDS-L-elsbetiae_contig2118:4984..5050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 4985..5050 +
1691683156.265167-CDS-L-elsbetiae_contig2118:4984..50501691683156.265167-CDS-L-elsbetiae_contig2118:4984..5050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 4985..5050 +
1622815867.797331-CDS-L-elsbetiae_contig2118:5562..64381622815867.797331-CDS-L-elsbetiae_contig2118:5562..6438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 5563..6438 +
1691683156.274592-CDS-L-elsbetiae_contig2118:5562..64381691683156.274592-CDS-L-elsbetiae_contig2118:5562..6438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 5563..6438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2118.6454.1

>prot_L-elsbetiae_contig2118.6454.1 ID=prot_L-elsbetiae_contig2118.6454.1|Name=mRNA_L-elsbetiae_contig2118.6454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MRAAGVPPDVVSYNTAMGACIKAHQHQRALSAFEEMQAAGVAPDRETFSA
AAEACACLSAGDGASGGGMGARAMEIMRTARDQGLRRPAAKAVAATLAAC
VGGGAWREAIPAVEAMLAASGRHAWDDVMNFLAEAQQLNRRDREGRAIGT
EEVDADDCCGGAVVAADAAALPGGRNADVPPFDAHNGGGGGSGACVTGPA
QTSAPSQQAAASVQAGKFPGRSEAQHNGSGMVSPGKQEASTCVRLQTRPI
PDVVKGPSEEADEDGGGEDGERRRSRQPRPRPSNTARGGATAGASFQLGG
LSTLAAAAVDQAP*
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mRNA from alignment at L-elsbetiae_contig2118:4979..6722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2118.6454.1 ID=mRNA_L-elsbetiae_contig2118.6454.1|Name=mRNA_L-elsbetiae_contig2118.6454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1744bp|location=Sequence derived from alignment at L-elsbetiae_contig2118:4979..6722+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGAATGCGGGCGGCGGGGGTGCCCCCCGACGTAGTTTCGTACAACAC
GGCCATGGGCGCTTGCATCAAGGTGGGTGGGTGGACGGGTTCTCAGCTTG
AGCTCAGAAGACATACCGAGCGAAGCCGCACAGCAGCTTTTTCGTTGAAG
ATGTCGCCGCTTTGTGGCACCCGAACACAGCAGCGTTGTTGATGAATATG
CACCTAAACGACTGGATGTTGTGTCTGAAGCATGAGCATATCTGTTTTTG
CCAAGCGTGCGGTTGGTGGTGCGGCGACTCGTTAATAGTGGTATATACCG
ATTCGCAGCCAGGATGCTCACTGCTGTCGTGTTCCGCAAGCGGTCGCTGA
TACCGGGGTTTGCTCTAGGGCAGGGTTATTTTTTCTTCTCCGCACGCTAT
GCCTCTCCACTGCTGTACCCTCCGTGCCTCTGGTCTGCCTGCCGAGAGAA
AAGTTACACCATGGTGGCCTTTTCGTCTGATGCCATGCGTCTGTCGAGGA
TACTCGTGCGAAGCCGAATTTCGGCACGTCACGTTTCGATACGTCGTCCT
TTTGCTTACGGTTCATCGGTTCCCCCCGTTCCAGGCACACCAGCACCAGC
GCGCCTTATCAGCTTTCGAGGAGATGCAGGCGGCCGGGGTAGCCCCCGAC
AGGGAGACGTTTTCGGCGGCCGCGGAGGCTTGCGCTTGCCTCTCCGCTGG
TGATGGCGCTTCGGGCGGTGGCATGGGTGCCCGTGCGATGGAGATTATGA
GAACGGCCCGAGATCAGGGCCTGAGAAGACCCGCGGCGAAGGCGGTGGCC
GCAACGCTCGCGGCGTGTGTCGGGGGAGGGGCTTGGCGCGAAGCGATCCC
GGCGGTGGAGGCAATGTTAGCAGCGAGCGGACGCCACGCGTGGGATGACG
TCATGAATTTTCTTGCTGAGGCGCAGCAGCTGAACAGGAGAGACAGAGAG
GGGCGGGCAATAGGCACGGAGGAAGTAGATGCCGATGACTGCTGCGGGGG
TGCCGTCGTCGCTGCTGATGCAGCTGCGTTGCCGGGTGGTCGAAACGCCG
ACGTACCGCCATTTGACGCCCACAACGGCGGCGGCGGCGGGAGCGGTGCT
TGTGTAACGGGACCCGCTCAAACATCAGCGCCATCGCAGCAGGCTGCGGC
GTCCGTGCAGGCAGGAAAATTCCCGGGCCGCAGCGAAGCGCAGCACAACG
GCAGCGGTATGGTTTCGCCGGGCAAACAAGAGGCGTCTACCTGTGTACGG
TTGCAGACGCGACCGATTCCCGACGTTGTCAAGGGTCCGTCGGAAGAGGC
AGACGAGGACGGGGGGGGTGAGGACGGGGAGCGCCGTCGATCACGGCAAC
CGAGGCCGCGACCGAGCAACACCGCGAGAGGGGGTGCCACGGCAGGGGCC
TCCTTTCAGCTGGGCGGGTTATCGACGCTAGCCGCCGCAGCGGTAGATCA
GGCGCCGTAAGGTTCGGCCGCTCCGTGCGGTGGTCGCCCGGCCCTTGGGC
ACGAGGGAGGTTGGGTTCCTTGCCCATTTTTGCATTTTTGGCTGGGGTTT
TCGTTCGTGATTTGGCGGGCGTTTCGAGCATGTATCTATTTTCTAGTGAA
GGAACCACGCGGAAGTACAAGTGAACGGGTACCCAACTACTTTTGTCCTC
TCGTTGCTTCATCGAGCTGTGTCTGGCTGACAGGTTTGATCTGAAAGGCG
CCTTGATGCTGTTTTTCGTGCTGATGAAATCATCCTCAACGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2118:4979..6722+

>mRNA_L-elsbetiae_contig2118.6454.1 ID=mRNA_L-elsbetiae_contig2118.6454.1|Name=mRNA_L-elsbetiae_contig2118.6454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig2118:4979..6722+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGCGGCGGGGGTGCCCCCCGACGTAGTTTCGTACAACACGGCCAT
GGGCGCTTGCATCAAGATGCGGGCGGCGGGGGTGCCCCCCGACGTAGTTT
CGTACAACACGGCCATGGGCGCTTGCATCAAGGCACACCAGCACCAGCGC
GCCTTATCAGCTTTCGAGGAGATGCAGGCGGCCGGGGTAGCCCCCGACAG
GGAGACGTTTTCGGCGGCCGCGGAGGCTTGCGCTTGCCTCTCCGCTGGTG
ATGGCGCTTCGGGCGGTGGCATGGGTGCCCGTGCGATGGAGATTATGAGA
ACGGCCCGAGATCAGGGCCTGAGAAGACCCGCGGCGAAGGCGGTGGCCGC
AACGCTCGCGGCGTGTGTCGGGGGAGGGGCTTGGCGCGAAGCGATCCCGG
CGGTGGAGGCAATGTTAGCAGCGAGCGGACGCCACGCGTGGGATGACGTC
ATGAATTTTCTTGCTGAGGCGCAGCAGCTGAACAGGAGAGACAGAGAGGG
GCGGGCAATAGGCACGGAGGAAGTAGATGCCGATGACTGCTGCGGGGGTG
CCGTCGTCGCTGCTGATGCAGCTGCGTTGCCGGGTGGTCGAAACGCCGAC
GTACCGCCATTTGACGCCCACAACGGCGGCGGCGGCGGGAGCGGTGCTTG
TGTAACGGGACCCGCTCAAACATCAGCGCCATCGCAGCAGGCTGCGGCGT
CCGTGCAGGCAGGAAAATTCCCGGGCCGCAGCGAAGCGCAGCACAACGGC
AGCGGTATGGTTTCGCCGGGCAAACAAGAGGCGTCTACCTGTGTACGGTT
GCAGACGCGACCGATTCCCGACGTTGTCAAGGGTCCGTCGGAAGAGGCAG
ACGAGGACGGGGGGGGTGAGGACGGGGAGCGCCGTCGATCACGGCAACCG
AGGCCGCGACCGAGCAACACCGCGAGAGGGGGTGCCACGGCAGGGGCCTC
CTTTCAGCTGGGCGGGTTATCGACGCTAGCCGCCGCAGCGGTAGATCAGG
CGCCGTAAGCACACCAGCACCAGCGCGCCTTATCAGCTTTCGAGGAGATG
CAGGCGGCCGGGGTAGCCCCCGACAGGGAGACGTTTTCGGCGGCCGCGGA
GGCTTGCGCTTGCCTCTCCGCTGGTGATGGCGCTTCGGGCGGTGGCATGG
GTGCCCGTGCGATGGAGATTATGAGAACGGCCCGAGATCAGGGCCTGAGA
AGACCCGCGGCGAAGGCGGTGGCCGCAACGCTCGCGGCGTGTGTCGGGGG
AGGGGCTTGGCGCGAAGCGATCCCGGCGGTGGAGGCAATGTTAGCAGCGA
GCGGACGCCACGCGTGGGATGACGTCATGAATTTTCTTGCTGAGGCGCAG
CAGCTGAACAGGAGAGACAGAGAGGGGCGGGCAATAGGCACGGAGGAAGT
AGATGCCGATGACTGCTGCGGGGGTGCCGTCGTCGCTGCTGATGCAGCTG
CGTTGCCGGGTGGTCGAAACGCCGACGTACCGCCATTTGACGCCCACAAC
GGCGGCGGCGGCGGGAGCGGTGCTTGTGTAACGGGACCCGCTCAAACATC
AGCGCCATCGCAGCAGGCTGCGGCGTCCGTGCAGGCAGGAAAATTCCCGG
GCCGCAGCGAAGCGCAGCACAACGGCAGCGGTATGGTTTCGCCGGGCAAA
CAAGAGGCGTCTACCTGTGTACGGTTGCAGACGCGACCGATTCCCGACGT
TGTCAAGGGTCCGTCGGAAGAGGCAGACGAGGACGGGGGGGGTGAGGACG
GGGAGCGCCGTCGATCACGGCAACCGAGGCCGCGACCGAGCAACACCGCG
AGAGGGGGTGCCACGGCAGGGGCCTCCTTTCAGCTGGGCGGGTTATCGAC
GCTAGCCGCCGCAGCGGTAGATCAGGCGCCGTAA
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