prot_L-elsbetiae_contig2118.6454.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2118.6454.1
Unique Nameprot_L-elsbetiae_contig2118.6454.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length314
Homology
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BLAST of mRNA_L-elsbetiae_contig2118.6454.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.250e-20
Identity = 64/99 (64.65%), Postives = 68/99 (68.69%), Query Frame = 0 
Query:    5 GVPPDVVSYNTAMGACIKAHQHQRALSAFEEMQAAGVAPDRETFSAAAEACACLSAGDGASGGGMGARAMEIMRTARDQGLRRPAAKAVAATLAACVGG 103
            GV PDVVSYNTAM AC +A QH RALS FE+MQAAG              CAC    DG  GG M  RAME+MR ARDQGL+RP AKAVAATLAACVGG
Sbjct:  324 GVSPDVVSYNTAMAACNEARQHLRALSTFEDMQAAGXXXXXXXXXXXXXXCACAIP-DG--GGSMVERAMELMRMARDQGLKRPGAKAVAATLAACVGG 419
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2118.6454.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8D4_9PHAE1.250e-2064.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..55
e-value: 8.6E-10
score: 38.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 8.1E-7
score: 26.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.246
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..167
e-value: 2.9E-18
score: 68.3
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2118contigL-elsbetiae_contig2118:4985..6438 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2118.6454.1mRNA_L-elsbetiae_contig2118.6454.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2118 4979..6722 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2118.6454.1 ID=prot_L-elsbetiae_contig2118.6454.1|Name=mRNA_L-elsbetiae_contig2118.6454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MRAAGVPPDVVSYNTAMGACIKAHQHQRALSAFEEMQAAGVAPDRETFSA
AAEACACLSAGDGASGGGMGARAMEIMRTARDQGLRRPAAKAVAATLAAC
VGGGAWREAIPAVEAMLAASGRHAWDDVMNFLAEAQQLNRRDREGRAIGT
EEVDADDCCGGAVVAADAAALPGGRNADVPPFDAHNGGGGGSGACVTGPA
QTSAPSQQAAASVQAGKFPGRSEAQHNGSGMVSPGKQEASTCVRLQTRPI
PDVVKGPSEEADEDGGGEDGERRRSRQPRPRPSNTARGGATAGASFQLGG
LSTLAAAAVDQAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf