mRNA_L-elsbetiae_contig2118.6453.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2118.6453.1
Unique NamemRNA_L-elsbetiae_contig2118.6453.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2118.6453.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.200e-47
Identity = 103/156 (66.03%), Postives = 115/156 (73.72%), Query Frame = 1 
Query:  130 GRFAPAHPASS------QRGIHEPTTDLQRQRTRRSRIRPRPVGSLSASVRDNAPDAPDVFDPHRGCEPGQDTEVVREKVELVLRLKDMGRRFEWRGALKVFRRVTAGGMVPDNSVYSCIIGVAAKSGRWSEAVELLREAR-DVACLEPNKYCYTA 576
            G+   A  ASS      Q+  HE +  LQ+   R SR RPRPVG+L AS RDNAPDAP VFD  RGCE    +E  RE++ELVLRLKDMGRRFEWRGA+KVFRR  A GMV DNSVYSCII V AKSGRWSEAVELL+EA+ D A L+PNKYCYTA
Sbjct:    2 GQLGTAAAASSPTSFPAQQLHHEHSKPLQKP-PRPSRRRPRPVGALDASARDNAPDAPRVFDASRGCE----SEAARERIELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAKEDPAGLDPNKYCYTA 152
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BLAST of mRNA_L-elsbetiae_contig2118.6453.1 vs. uniprot
Match: D7FXC1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC1_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.690e-47
Identity = 116/160 (72.50%), Postives = 125/160 (78.12%), Query Frame = 1 
Query:  175 HEPTTDLQRQRTRRSRIRPRPVGSLSASVRDNAPDAPDVFDPHRGCEPGQDTEVVREKVELVLRLKDMGRRFEWRGALKVFRRVTAGGMVPDNSVYSCIIGVAAKSGRWSEAVELLREAR-DVACLEPNKYCYTAXXXXXXXXXXXXXXXXXXXXMREAG 651
            H   ++ Q++  R  R RPRPVG+L AS RDNAPDAP VFD  RGCE    +E  RE+VELVLRLKDMGRRFEWRGA+KVFRR  A GMV DNSVYSCII V AKSGRWSEAVELL+EAR D A L PNKYC   XXXXXXXXXXXXXXXXXX  MREAG
Sbjct:   15 HHQHSNPQQKPPRPGRRRPRPVGALDASARDNAPDAPRVFDASRGCE----SEAARERVELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAREDPAGLAPNKYCXXXXXXXXXXXXXXXXXXXXXDEMREAG 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2118.6453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8D4_9PHAE2.200e-4766.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXC1_ECTSI4.690e-4772.50PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2118contigL-elsbetiae_contig2118:2122..4545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue1.2e-40
Seed eggNOG ortholog2880.D7FXC1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size879
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2118.6453.1prot_L-elsbetiae_contig2118.6453.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2118 2140..4545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.719033-UTR-L-elsbetiae_contig2118:2121..21391622815867.719033-UTR-L-elsbetiae_contig2118:2121..2139Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2118 2122..2139 +
1691683156.2057104-UTR-L-elsbetiae_contig2118:2121..21391691683156.2057104-UTR-L-elsbetiae_contig2118:2121..2139Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2118 2122..2139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.7316747-CDS-L-elsbetiae_contig2118:2139..25851622815867.7316747-CDS-L-elsbetiae_contig2118:2139..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 2140..2585 +
1691683156.2186513-CDS-L-elsbetiae_contig2118:2139..25851691683156.2186513-CDS-L-elsbetiae_contig2118:2139..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 2140..2585 +
1622815867.7432702-CDS-L-elsbetiae_contig2118:4130..45451622815867.7432702-CDS-L-elsbetiae_contig2118:4130..4545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 4131..4545 +
1691683156.2305613-CDS-L-elsbetiae_contig2118:4130..45451691683156.2305613-CDS-L-elsbetiae_contig2118:4130..4545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2118 4131..4545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2118.6453.1

>prot_L-elsbetiae_contig2118.6453.1 ID=prot_L-elsbetiae_contig2118.6453.1|Name=mRNA_L-elsbetiae_contig2118.6453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
MLTFTLPGWTSLDPRTQTIGIFPYERRVNRGGRATLAGRFAPAHPASSQR
GIHEPTTDLQRQRTRRSRIRPRPVGSLSASVRDNAPDAPDVFDPHRGCEP
GQDTEVVREKVELVLRLKDMGRRFEWRGALKVFRRVTAGGMVPDNSVYSC
IIGVAAKSGRWSEAVELLREARDVACLEPNKYCYTAAVSACAKGRNWELA
LSLLDEMREAGLSPDHFTYGSAVSAMARTGQWQRALDLLGQMAEEGLRPN
VVCYGSAVDACAKGGQWERAVGLLEEMRGAGVEPDR*
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mRNA from alignment at L-elsbetiae_contig2118:2122..4545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2118.6453.1 ID=mRNA_L-elsbetiae_contig2118.6453.1|Name=mRNA_L-elsbetiae_contig2118.6453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2424bp|location=Sequence derived from alignment at L-elsbetiae_contig2118:2122..4545+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGGTGAGGACAAAGGATGCTGACCTTCACGTTGCCCGGATGGACGTC
GCTAGATCCCCGAACGCAGACGATAGGGATATTTCCTTACGAGAGAAGAG
TCAACCGCGGTGGTAGGGCAACGCTCGCGGGACGCTTTGCTCCTGCTCAT
CCTGCTTCATCTCAACGCGGCATTCATGAGCCCACAACCGACCTCCAGCG
ACAGCGGACAAGGCGCAGTCGCATACGACCAAGACCGGTAGGATCTCTAA
GTGCAAGCGTCCGTGATAATGCGCCAGATGCACCTGACGTGTTCGACCCT
CATAGAGGCTGCGAGCCGGGGCAGGACACCGAAGTTGTGCGAGAGAAGGT
GGAGCTGGTATTGCGGCTCAAAGACATGGGGAGGAGGTTCGAGTGGAGAG
GCGCGCTGAAGGTGTTTCGGAGGGTCACAGCTGGAGGCATGGTCCCGGAT
AACAGTGTTTACAGGTCAGTGGATGAGCTCTTCGGTAGCAGTTGCTCGTG
GGTTTTGTTTCAGACAATCATGTCTCCTGCAGACGAAGCATGCACATGAT
CAACCTTCAACCGCCGCGTTTCTCGCAAGTTCGACAGGCGGTCGCGCGGG
TACGGCTTGTATTAGACTACCGCATCGAATCCAAGCAGCATGCGATCGCC
TTGGCACGAGGTATATCATCATGGGTTTCTTACCACAGCCTGGAGCGCCT
AGTCACTAGACCCTCTCCCGATGCTTTCATAAAACTCGTTCAAGACAAGA
CACAAACACGCTCCTGACCACCTTATCCCCCTGCTCTGCGGATCAACAGC
AGCAAGCGCGTACTTGCCGACAGCACCAGTGTACCTATTTTATTTGCTGG
GCGCATGATTCCGTCCAGTGCTTTGAAGCAGTAACACCACTAGACGTCAA
GGAAAAGCCCTTACGCCACCACATGATTGAAGCACGAAAGTCAAGCAACG
GTAGTGCCGCCGTTACGCTCCCGCCTTTCTCCTTCCTTGCCTCGGTGCAG
GGTGATAAAGATCAGATTTGTTAATCCTTTGGTATGAAGAAACCGACAAG
TTGGCCCATACCAAGAGTTCCCCGTCGATCTCAGCTCGCGATACCTGTTT
CTGTCGGAATCGCGTCCCCTCTTCCACGTGTGCCAAACACGAAACACGCA
CTGCCTGGAAACCCGTTATGGAAGTCGTGTGGCCACGCTAAAACAGACTT
CCGAAGCTGCACAATACCCAGCAGCAGCCAATTTTATCGTTTGTCGTTGT
TTTAACATGTCTCACATGTCTATTTAAGTAGATACCGGTCGAGAGATCGG
TCAGATTTTCAATGTTATCCGGAGAAGACTGGTCTCGTGAAGTAGCATTT
TCGCATTTTCGCGCGTTGTTAAGACTGCAACCAGAAAATCGTCGACACGC
TCCCAAGACTATGTAGAATACTTTTGTCCTCCGCAAAATCCATCTGCACA
CGCTTGCCCACAGTTAGACGCGCGTACCCGCGGCAGGTGAGAAGATAGCA
ACTTTCCGTTTCGCTCCGGCCTGTTGCCGTAAGGGAGTGGCGCACTTCTA
TTTTGGAAATCACCGTCAACACCGAGAAGGTTTACCTTTCAACGGCAGTT
GCATCATGGGCCATCCTTTCGTAGCACCAAGGCGCGCTCTCAACCGCTTT
CATTCTCTGTATTTCAGATATTATTCATGTAGTCTTACCACCAATACTGT
CGCTTACAGCAGTATCCCTGGCTGTTTTGCTCTCAACAAGTTCAGCACTA
GTAGAGCCATACCTTAAACTTCCCCCAGCTGTGTCGTGCGCCGTTCCTAA
TGCTAAATCTATGATACGAGAGACGCCTCCGCGGCGAACGCGGTTCCGCT
CTGTTCTTGTTTTGCGAAGCTCCAAGCAGACAAGAGGTTCTTCCCACAGT
TGGTGACCCACAGCCTCTTGCACCTCTTCCTCTCTTCCTCTCTCCATCGT
ACTCGCTCACACACCTACTCCTCCCCACTCCTTCGCCGTCTTTGCAACAA
AACACCCAGCTGCATCATTGGCGTAGCCGCCAAGAGCGGGCGGTGGTCAG
AAGCGGTAGAACTCCTACGAGAAGCCCGAGACGTCGCCTGCCTAGAGCCC
AACAAGTACTGCTACACGGCTGCCGTCAGCGCCTGTGCCAAGGGTCGGAA
CTGGGAGCTGGCCTTGTCGCTGCTGGACGAGATGCGCGAGGCGGGCCTCA
GCCCCGACCACTTCACCTACGGGTCCGCCGTCAGCGCGATGGCCAGGACC
GGGCAGTGGCAGCGCGCGCTGGACCTGCTGGGGCAGATGGCGGAGGAGGG
CCTGCGGCCGAATGTGGTCTGCTACGGTTCCGCGGTGGACGCGTGCGCGA
AGGGAGGGCAGTGGGAGAGAGCGGTGGGGCTGCTGGAGGAGATGAGGGGT
GCCGGGGTGGAGCCCGATAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2118:2122..4545+

>mRNA_L-elsbetiae_contig2118.6453.1 ID=mRNA_L-elsbetiae_contig2118.6453.1|Name=mRNA_L-elsbetiae_contig2118.6453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig2118:2122..4545+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGACCTTCACGTTGCCCGGATGGACGTCGCTAGATCCCCGAACGCA
GACGATAGGGATATTTCCTTACGAGAGAAGAGTCAACCGCGGTGGTAGGG
CAACGCTCGCGGGACGCTTTGCTCCTGCTCATCCTGCTTCATCTCAACGC
GGCATTCATGAGCCCACAACCGACCTCCAGCGACAGCGGACAAGGCGCAG
TCGCATACGACCAAGACCGGTAGGATCTCTAAGTGCAAGCGTCCGTGATA
ATGCGCCAGATGCACCTGACGTGTTCGACCCTCATAGAGGCTGCGAGCCG
GGGCAGGACACCGAAGTTGTGCGAGAGAAGGTGGAGCTGGTATTGCGGCT
CAAAGACATGGGGAGGAGGTTCGAGTGGAGAGGCGCGCTGAAGGTGTTTC
GGAGGGTCACAGCTGGAGGCATGGTCCCGGATAACAGTGTTTACAGATGC
TGACCTTCACGTTGCCCGGATGGACGTCGCTAGATCCCCGAACGCAGACG
ATAGGGATATTTCCTTACGAGAGAAGAGTCAACCGCGGTGGTAGGGCAAC
GCTCGCGGGACGCTTTGCTCCTGCTCATCCTGCTTCATCTCAACGCGGCA
TTCATGAGCCCACAACCGACCTCCAGCGACAGCGGACAAGGCGCAGTCGC
ATACGACCAAGACCGGTAGGATCTCTAAGTGCAAGCGTCCGTGATAATGC
GCCAGATGCACCTGACGTGTTCGACCCTCATAGAGGCTGCGAGCCGGGGC
AGGACACCGAAGTTGTGCGAGAGAAGGTGGAGCTGGTATTGCGGCTCAAA
GACATGGGGAGGAGGTTCGAGTGGAGAGGCGCGCTGAAGGTGTTTCGGAG
GGTCACAGCTGGAGGCATGGTCCCGGATAACAGTGTTTACAGCTGCATCA
TTGGCGTAGCCGCCAAGAGCGGGCGGTGGTCAGAAGCGGTAGAACTCCTA
CGAGAAGCCCGAGACGTCGCCTGCCTAGAGCCCAACAAGTACTGCTACAC
GGCTGCCGTCAGCGCCTGTGCCAAGGGTCGGAACTGGGAGCTGGCCTTGT
CGCTGCTGGACGAGATGCGCGAGGCGGGCCTCAGCCCCGACCACTTCACC
TACGGGTCCGCCGTCAGCGCGATGGCCAGGACCGGGCAGTGGCAGCGCGC
GCTGGACCTGCTGGGGCAGATGGCGGAGGAGGGCCTGCGGCCGAATGTGG
TCTGCTACGGTTCCGCGGTGGACGCGTGCGCGAAGGGAGGGCAGTGGGAG
AGAGCGGTGGGGCTGCTGGAGGAGATGAGGGGTGCCGGGGTGGAGCCCGA
TAGGTGACTGCATCATTGGCGTAGCCGCCAAGAGCGGGCGGTGGTCAGAA
GCGGTAGAACTCCTACGAGAAGCCCGAGACGTCGCCTGCCTAGAGCCCAA
CAAGTACTGCTACACGGCTGCCGTCAGCGCCTGTGCCAAGGGTCGGAACT
GGGAGCTGGCCTTGTCGCTGCTGGACGAGATGCGCGAGGCGGGCCTCAGC
CCCGACCACTTCACCTACGGGTCCGCCGTCAGCGCGATGGCCAGGACCGG
GCAGTGGCAGCGCGCGCTGGACCTGCTGGGGCAGATGGCGGAGGAGGGCC
TGCGGCCGAATGTGGTCTGCTACGGTTCCGCGGTGGACGCGTGCGCGAAG
GGAGGGCAGTGGGAGAGAGCGGTGGGGCTGCTGGAGGAGATGAGGGGTGC
CGGGGTGGAGCCCGATAGGTGA
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