prot_L-elsbetiae_contig2118.6453.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2118.6453.1
Unique Nameprot_L-elsbetiae_contig2118.6453.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length287
Homology
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BLAST of mRNA_L-elsbetiae_contig2118.6453.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.830e-47
Identity = 103/156 (66.03%), Postives = 115/156 (73.72%), Query Frame = 0 
Query:   38 GRFAPAHPASS------QRGIHEPTTDLQRQRTRRSRIRPRPVGSLSASVRDNAPDAPDVFDPHRGCEPGQDTEVVREKVELVLRLKDMGRRFEWRGALKVFRRVTAGGMVPDNSVYSCIIGVAAKSGRWSEAVELLREAR-DVACLEPNKYCYTA 186
            G+   A  ASS      Q+  HE +  LQ+   R SR RPRPVG+L AS RDNAPDAP VFD  RGCE    +E  RE++ELVLRLKDMGRRFEWRGA+KVFRR  A GMV DNSVYSCII V AKSGRWSEAVELL+EA+ D A L+PNKYCYTA
Sbjct:    2 GQLGTAAAASSPTSFPAQQLHHEHSKPLQKP-PRPSRRRPRPVGALDASARDNAPDAPRVFDASRGCE----SEAARERIELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAKEDPAGLDPNKYCYTA 152
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BLAST of mRNA_L-elsbetiae_contig2118.6453.1 vs. uniprot
Match: D7FXC1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC1_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.900e-47
Identity = 116/160 (72.50%), Postives = 125/160 (78.12%), Query Frame = 0 
Query:   53 HEPTTDLQRQRTRRSRIRPRPVGSLSASVRDNAPDAPDVFDPHRGCEPGQDTEVVREKVELVLRLKDMGRRFEWRGALKVFRRVTAGGMVPDNSVYSCIIGVAAKSGRWSEAVELLREAR-DVACLEPNKYCYTAXXXXXXXXXXXXXXXXXXXXMREAG 211
            H   ++ Q++  R  R RPRPVG+L AS RDNAPDAP VFD  RGCE    +E  RE+VELVLRLKDMGRRFEWRGA+KVFRR  A GMV DNSVYSCII V AKSGRWSEAVELL+EAR D A L PNKYC   XXXXXXXXXXXXXXXXXX  MREAG
Sbjct:   15 HHQHSNPQQKPPRPGRRRPRPVGALDASARDNAPDAPRVFDASRGCE----SEAARERVELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAREDPAGLAPNKYCXXXXXXXXXXXXXXXXXXXXXDEMREAG 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2118.6453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8D4_9PHAE1.830e-4766.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXC1_ECTSI3.900e-4772.50PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 113..286
e-value: 2.7E-46
score: 160.3
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 112..278
e-value: 6.1E-10
score: 38.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 182..215
e-value: 7.3E-9
score: 33.3
coord: 217..251
e-value: 5.2E-6
score: 24.3
coord: 147..173
e-value: 0.0028
score: 15.7
coord: 252..285
e-value: 3.1E-7
score: 28.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 180..214
score: 11.564
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..284
score: 11.86
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..178
score: 8.506
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 215..249
score: 11.652
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 109..143
score: 5.141
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 129..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2118contigL-elsbetiae_contig2118:2140..4545 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2118.6453.1mRNA_L-elsbetiae_contig2118.6453.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2118 2122..4545 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2118.6453.1 ID=prot_L-elsbetiae_contig2118.6453.1|Name=mRNA_L-elsbetiae_contig2118.6453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
MLTFTLPGWTSLDPRTQTIGIFPYERRVNRGGRATLAGRFAPAHPASSQR
GIHEPTTDLQRQRTRRSRIRPRPVGSLSASVRDNAPDAPDVFDPHRGCEP
GQDTEVVREKVELVLRLKDMGRRFEWRGALKVFRRVTAGGMVPDNSVYSC
IIGVAAKSGRWSEAVELLREARDVACLEPNKYCYTAAVSACAKGRNWELA
LSLLDEMREAGLSPDHFTYGSAVSAMARTGQWQRALDLLGQMAEEGLRPN
VVCYGSAVDACAKGGQWERAVGLLEEMRGAGVEPDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat