mRNA_L-elsbetiae_contig2114.6440.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2114.6440.1
Unique NamemRNA_L-elsbetiae_contig2114.6440.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: A0A6H5JS01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS01_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.540e-25
Identity = 65/125 (52.00%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   42 AGQREGVGGXXXXXXEGKAAFTWKRSRKAEAAMR--------------------------------------DPACGYDFVREAGYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            AGQR G G         +A+FTWKRS+KAEAAMR                                      DPACGYDFVREAGY+ E FLGRVEAY+SYSRQKLETRRGED YA+++DKLECP
Sbjct:  434 AGQRGGGGE--------EASFTWKRSKKAEAAMRQVHNANGPRRGWKQCEIGENITRTLVKELHTTFPVAVRDPACGYDFVREAGYNTEGFLGRVEAYASYSRQKLETRRGEDLYASRVDKLECP 550          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: D8LEG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.120e-23
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 3
Query:  135 AMRDPACGYDFVREAGYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECPQ 305
            A RDPACGYDFVREAGY+ E FLGRVEAY+SYSR KLETRRGED YA+++DKLECPQ
Sbjct:  327 AFRDPACGYDFVREAGYNTEGFLGRVEAYASYSRHKLETRRGEDLYASRVDKLECPQ 383          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: A0A485L451_9STRA (Aste57867_15085 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L451_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.030e-10
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFV-REAG---YSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  ++++ +EAAMR+PACGYDFV R+ G      EDF+ R+EA  +  R++LET RGE+ Y  + +K +CP
Sbjct:  292 FYTRKTKASEAAMRNPACGYDFVSRQDGDETNQNEDFIARMEAAENNRRKRLETTRGEEAYNVRQNKKQCP 362          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: A0A024UBR1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBR1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.010e-9
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFVREA-----GYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  K+++ + AAMR+PACGYDFV        G +  DFL R++      R+KLET RGE+ Y  +  K ECP
Sbjct:  499 FYPKKTKASVAAMRNPACGYDFVHRGHDGDDGTAGNDFLNRMQVAEQNRRKKLETTRGEEAYMLRQSKKECP 570          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: W4FZ05_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZ05_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.290e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFVREA-----------GYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  ++S+ + AAMR+PACGYDFV              G S  DFL R+E      R+KL+T RGE+ Y  + +K ECP
Sbjct:  581 FYPQKSKASVAAMRNPACGYDFVHRGQADDDDDNEGHGSSGRDFLNRMEVAEQNRRKKLDTTRGEEAYMLRQNKKECP 658          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: A0A1V9ZFP4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFP4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.010e-7
Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFVR--EAGYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  K++R   AAM++PACGYDFV   +   + +DF+ R+EA  S  +++L+  RGE++Y+ + +K  CP
Sbjct:  175 FQPKKTRAQLAAMKNPACGYDFVNHFDEDEAADDFIARMEAAESNRQKRLQVTRGEEEYSLRQNKKLCP 243          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: A0A067CK62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CK62_SAPPC)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-7
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFVR---EAGYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  K++R   AAM++PACGYDFV    +     +DF+ R+EA     +++L+  RGE++Y+ + +K +CP
Sbjct:  174 FQPKKTRSQLAAMKNPACGYDFVNHFEDEDAGPDDFIARMEAAEHNRQKRLQATRGEEEYSLRQNKKQCP 243          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: T0QJK2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QJK2_SAPDV)

HSP 1 Score: 57.4 bits (137), Expect = 1.930e-7
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFVR--EAGYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  K++R   AAM++PACGYDFV   +     +DF+ R+EA     +++L++ RGE++Y+ + +K +CP
Sbjct:  193 FQPKKTRSQLAAMKNPACGYDFVNHFDDEDKADDFIARMEAAEHNRQKRLQSTRGEEEYSLRQNKKQCP 261          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: A0A024UD78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UD78_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.830e-7
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFVREAGY--SREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  K++R +  AM++PACGYDFV       S  DF+GR++A     +++LE  RGE+ Y  + +K +CP
Sbjct:  354 FRPKKTRASVRAMKNPACGYDFVTRTAETDSANDFIGRMDAAEQNRQKRLELIRGEEAYNVRQNKRQCP 422          
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Match: A0A485L2C3_9STRA (Aste57867_15084 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2C3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.020e-7
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  102 FTWKRSRKAEAAMRDPACGYDFVR----EAGYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECP 302
            F  K+++ + AAMR+PACGYDFV     +   S + FL R+EA     R++++T RGE++Y  + +K +CP
Sbjct:  799 FYPKKTKASLAAMRNPACGYDFVNRNEDDDEGSAKGFLARMEAAEINRRKRIDTTRGEEEYNLRQNKKQCP 869          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2114.6440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JS01_9PHAE1.540e-2552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEG4_ECTSI3.120e-2382.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485L451_9STRA4.030e-1046.48Aste57867_15085 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UBR1_9STRA5.010e-944.44Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FZ05_9STRA1.290e-842.31Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A1V9ZFP4_9STRA1.010e-740.58Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CK62_SAPPC1.890e-738.57Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QJK2_SAPDV1.930e-739.13Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A024UD78_9STRA2.830e-740.58Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485L2C3_9STRA4.020e-740.85Aste57867_15084 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2114contigL-elsbetiae_contig2114:8634..9262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog157072.XP_008868060.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2AZKF@1,2S063@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_004800.1
Exons2
Model size308
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2114.6440.1prot_L-elsbetiae_contig2114.6440.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2114 8634..9242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.8455715-CDS-L-elsbetiae_contig2114:8633..87991622815866.8455715-CDS-L-elsbetiae_contig2114:8633..8799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2114 8634..8799 -
1691683155.6914792-CDS-L-elsbetiae_contig2114:8633..87991691683155.6914792-CDS-L-elsbetiae_contig2114:8633..8799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2114 8634..8799 -
1622815866.8560483-CDS-L-elsbetiae_contig2114:9120..92421622815866.8560483-CDS-L-elsbetiae_contig2114:9120..9242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2114 9121..9242 -
1691683155.7105875-CDS-L-elsbetiae_contig2114:9120..92421691683155.7105875-CDS-L-elsbetiae_contig2114:9120..9242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2114 9121..9242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.8656738-UTR-L-elsbetiae_contig2114:9242..92621622815866.8656738-UTR-L-elsbetiae_contig2114:9242..9262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2114 9243..9262 -
1691683155.7191117-UTR-L-elsbetiae_contig2114:9242..92621691683155.7191117-UTR-L-elsbetiae_contig2114:9242..9262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2114 9243..9262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2114.6440.1

>prot_L-elsbetiae_contig2114.6440.1 ID=prot_L-elsbetiae_contig2114.6440.1|Name=mRNA_L-elsbetiae_contig2114.6440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MGRGKSAAGQREGVGGRGGIGGEGKAAFTWKRSRKAEAAMRDPACGYDFV
REAGYSREDFLGRVEAYSSYSRQKLETRRGEDQYAAKLDKLECPQ*
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mRNA from alignment at L-elsbetiae_contig2114:8634..9262-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2114.6440.1 ID=mRNA_L-elsbetiae_contig2114.6440.1|Name=mRNA_L-elsbetiae_contig2114.6440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=629bp|location=Sequence derived from alignment at L-elsbetiae_contig2114:8634..9262- (Laminarionema elsbetiae ELsaHSoW15)
GAAGGCTTGGCGACTCGTGTATGGGACGGGGAAAGTCTGCTGCTGGCCAA CGGGAAGGCGTTGGAGGTAGAGGGGGCATCGGGGGAGAAGGCAAGGCAGC GTTTACCTGGAAGCGTTCGAGAAAAGCGGAGGCCGCAATGAGGTACGCAT TGTGAAATTATGTTCCAGAGAAACACCAGCTGCTGACGCTACATACGTGT ACCAAGCAACGGTTTGATGCCATACCTTGAAAGGATATTTCTACATTAAT CAAGTCGGCCGCCAACACGCAGAAAACATCCGATGACAAATTCCATACCT TCCTAGAAGACTAGCTTGGAAGCACAGATTCACCGCTGGAGGTGTTCAGG ATGACACACACCACGATCCGTCCAAAGTAACCGCTGAACACAACAGAGCC ATATCCCGCACCATGTCCCCTCGTGCCTATCATCTGCGCCAAAAACTGTG CAATTTCCACCAGAGATCCGGCCTGCGGGTACGACTTCGTGCGGGAAGCC GGCTACAGTAGGGAGGACTTTTTGGGCAGAGTAGAGGCGTACTCGTCGTA CAGCAGGCAAAAACTCGAGACGCGGCGAGGGGAAGACCAATACGCCGCGA AGTTGGACAAGCTCGAGTGTCCGCAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2114:8634..9262-

>mRNA_L-elsbetiae_contig2114.6440.1 ID=mRNA_L-elsbetiae_contig2114.6440.1|Name=mRNA_L-elsbetiae_contig2114.6440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig2114:8634..9262- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACGGGGAAAGTCTGCTGCTGGCCAACGGGAAGGCGTTGGAGGTAG
AGGGGGCATCGGGGGAGAAGGCAAGGCAGCGTTTACCTGGAAGCGTTCGA
GAAAAGCGGAGGCCGCAATGAGATGGGACGGGGAAAGTCTGCTGCTGGCC
AACGGGAAGGCGTTGGAGGTAGAGGGGGCATCGGGGGAGAAGGCAAGGCA
GCGTTTACCTGGAAGCGTTCGAGAAAAGCGGAGGCCGCAATGAGAGATCC
GGCCTGCGGGTACGACTTCGTGCGGGAAGCCGGCTACAGTAGGGAGGACT
TTTTGGGCAGAGTAGAGGCGTACTCGTCGTACAGCAGGCAAAAACTCGAG
ACGCGGCGAGGGGAAGACCAATACGCCGCGAAGTTGGACAAGCTCGAGTG
TCCGCAGTGAAGATCCGGCCTGCGGGTACGACTTCGTGCGGGAAGCCGGC
TACAGTAGGGAGGACTTTTTGGGCAGAGTAGAGGCGTACTCGTCGTACAG
CAGGCAAAAACTCGAGACGCGGCGAGGGGAAGACCAATACGCCGCGAAGT
TGGACAAGCTCGAGTGTCCGCAGTGA
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