mRNA_L-elsbetiae_contig21139.6438.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21139.6438.1
Unique NamemRNA_L-elsbetiae_contig21139.6438.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: A0A6H5L7Y5_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y5_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.010e-28
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1
Query:    1 EAREAFQRGGFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG 189
            EAR+AF RGGFS+V+NRLQRRWRGV R S ALEDVLG PVNANLYMTPP+SQGFEAHFDWMDG
Sbjct:  114 EARKAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDG 176          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: D7G4T0_ECTSI (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T0_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.050e-27
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    1 EAREAFQRGGFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG 189
            EAR+AF RGGFS+V+NRLQRRWRGV R S ALE VLG PVNANLYMTPP+SQGFEAHFDWMDG
Sbjct:  160 EARKAFHRGGFSVVINRLQRRWRGVLRASRALEHVLGQPVNANLYMTPPQSQGFEAHFDWMDG 222          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: W7TVJ2_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVJ2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.450e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    4 AREAFQRGGFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG-----EGAQR 204
            A  AF RG +SLV+N ++ +  G SR++LA E  LG+  + N Y TPP SQ FEAHFDWMD      EG++R
Sbjct:  150 AHAAFSRG-YSLVINNIEDKLYGTSRLALAFEGELGYRTSINCYFTPPGSQAFEAHFDWMDAFILQVEGSKR 220          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: A0A7K3DMI3_9ACTN (Cupin (Fragment) n=1 Tax=Streptomyces sp. SID5785 TaxID=2690309 RepID=A0A7K3DMI3_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 2.630e-10
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   28 GFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG-----EGAQRVLV 213
            G +LV+  LQR W  V+ ++ AL   LGHPV AN Y+TPP+++GF+AH+D  D      EGA+R +V
Sbjct:   94 GATLVLQALQRTWEPVADLTAALGTELGHPVQANAYVTPPQNRGFDAHYDVHDVFVLQIEGAKRWIV 160          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: A0A7S0VDM9_9CRYP (Bifunctional lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VDM9_9CRYP)

HSP 1 Score: 63.5 bits (153), Expect = 2.790e-10
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    7 REAFQRGGFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMD 186
            RE     GF+LV+N L  R RGV+R++ +LE   G  V ANLY+TPP SQGFE H+D M+
Sbjct:  138 RELVHEKGFTLVLNHLDMRVRGVARLARSLEKQTGLAVQANLYLTPPGSQGFEVHWDPME 197          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: A0A367EX44_9ACTN (Cupin n=1 Tax=Streptomyces reniochalinae TaxID=2250578 RepID=A0A367EX44_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 5.940e-10
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   28 GFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG-----EGAQRVLV 213
            G +LV+  LQR W  V+  S  L   LGHPV AN Y+TPP+S+GF+AH+D  D      EG +R LV
Sbjct:  109 GATLVLQALQRTWEPVADFSSGLSAELGHPVQANAYVTPPQSRGFDAHYDVHDVFIVQIEGTKRWLV 175          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: A0A6I5D8P1_9ACTN (Cupin (Fragment) n=1 Tax=Streptomyces sp. SID4982 TaxID=2690291 RepID=A0A6I5D8P1_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 5.980e-10
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   28 GFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG-----EGAQRVLV 213
            G +LV+  LQR W  V  +   L   LGHPV AN Y+TPP+SQGF+AH+D  D      +G++R LV
Sbjct:  113 GATLVLQALQRTWAPVGDLCAGLSAELGHPVQANAYVTPPQSQGFDAHYDVHDVFVVQIQGSKRWLV 179          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: A0A4Q7Z5K4_9ACTN (Ribosomal protein L16 Arg81 hydroxylase n=8 Tax=Streptomyces TaxID=1883 RepID=A0A4Q7Z5K4_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 8.150e-10
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   28 GFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG-----EGAQRVLV 213
            G +LV+  LQR W  V  +  AL   LGHPV AN Y+TPP+SQGF+ H+D  D      +G++R LV
Sbjct:  112 GATLVLQALQRTWAPVGELCAALSTELGHPVQANAYITPPQSQGFDDHYDVHDVFVVQIQGSKRWLV 178          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: UPI001FFDB8FA (cupin domain-containing protein n=1 Tax=Sphingomonas sp. S2M10 TaxID=2705010 RepID=UPI001FFDB8FA)

HSP 1 Score: 62.4 bits (150), Expect = 1.090e-9
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   28 GFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMD 186
            G+S+V+N + R W  V+R   AL   L HPV+ANLY+TPP++QGF+ H+D MD
Sbjct:   85 GYSIVLNDVARFWEPVTRYCAALCADLHHPVDANLYLTPPDTQGFDPHYDIMD 137          
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Match: A0A2T7JYA2_9ACTN (Cupin n=6 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A2T7JYA2_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 1.120e-9
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   28 GFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPESQGFEAHFDWMDG-----EGAQRVLV 213
            G +LV+  LQR W  V+ ++  L   LGHPV AN Y+TPP+++GF+AH+D  D      EG +R LV
Sbjct:  113 GATLVLQALQRTWEPVAELTARLSAELGHPVQANAYVTPPQNRGFDAHYDVHDVFVLQIEGTKRWLV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21139.6438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Y5_9PHAE1.010e-2885.71Bifunctional lysine-specific demethylase and histi... [more]
D7G4T0_ECTSI1.050e-2784.13Bifunctional lysine-specific demethylase and histi... [more]
W7TVJ2_9STRA1.450e-1150.00Bifunctional lysine-specific demethylase and histi... [more]
A0A7K3DMI3_9ACTN2.630e-1047.76Cupin (Fragment) n=1 Tax=Streptomyces sp. SID5785 ... [more]
A0A7S0VDM9_9CRYP2.790e-1053.33Bifunctional lysine-specific demethylase and histi... [more]
A0A367EX44_9ACTN5.940e-1049.25Cupin n=1 Tax=Streptomyces reniochalinae TaxID=225... [more]
A0A6I5D8P1_9ACTN5.980e-1047.76Cupin (Fragment) n=1 Tax=Streptomyces sp. SID4982 ... [more]
A0A4Q7Z5K4_9ACTN8.150e-1047.76Ribosomal protein L16 Arg81 hydroxylase n=8 Tax=St... [more]
UPI001FFDB8FA1.090e-952.83cupin domain-containing protein n=1 Tax=Sphingomon... [more]
A0A2T7JYA2_9ACTN1.120e-946.27Cupin n=6 Tax=unclassified Streptomyces TaxID=2593... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21139contigL-elsbetiae_contig21139:162..377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D7G4T0
KEGG koko:K16914
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone demethylase activity (H3-K4 specific)
EggNOG OGsKOG3706@1,KOG3706@2759
EC1.14.11.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.740686-CDS-L-elsbetiae_contig21139:161..3771622815866.740686-CDS-L-elsbetiae_contig21139:161..377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21139 162..377 -
1691683155.635412-CDS-L-elsbetiae_contig21139:161..3771691683155.635412-CDS-L-elsbetiae_contig21139:161..377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21139 162..377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21139.6438.1prot_L-elsbetiae_contig21139.6438.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21139 162..377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21139.6438.1

>prot_L-elsbetiae_contig21139.6438.1 ID=prot_L-elsbetiae_contig21139.6438.1|Name=mRNA_L-elsbetiae_contig21139.6438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
EAREAFQRGGFSLVMNRLQRRWRGVSRVSLALEDVLGHPVNANLYMTPPE
SQGFEAHFDWMDGEGAQRVLV*
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mRNA from alignment at L-elsbetiae_contig21139:162..377-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21139.6438.1 ID=mRNA_L-elsbetiae_contig21139.6438.1|Name=mRNA_L-elsbetiae_contig21139.6438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig21139:162..377- (Laminarionema elsbetiae ELsaHSoW15)
GAGGCGCGCGAGGCGTTTCAGCGCGGTGGGTTCTCCCTGGTGATGAACCG GCTTCAGAGGAGGTGGCGGGGCGTGTCGAGGGTCTCGCTGGCGCTGGAAG ACGTGCTCGGGCACCCCGTCAACGCCAACCTGTACATGACGCCGCCGGAG AGCCAGGGCTTCGAGGCGCACTTCGATTGGATGGACGGTGAGGGGGCGCA GCGCGTGCTGGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21139:162..377-

>mRNA_L-elsbetiae_contig21139.6438.1 ID=mRNA_L-elsbetiae_contig21139.6438.1|Name=mRNA_L-elsbetiae_contig21139.6438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig21139:162..377- (Laminarionema elsbetiae ELsaHSoW15)
GAGGCGCGCGAGGCGTTTCAGCGCGGTGGGTTCTCCCTGGTGATGAACCG
GCTTCAGAGGAGGTGGCGGGGCGTGTCGAGGGTCTCGCTGGCGCTGGAAG
ACGTGCTCGGGCACCCCGTCAACGCCAACCTGTACATGACGCCGCCGGAG
AGCCAGGGCTTCGAGGCGCACTTCGATTGGATGGACGGTGAGGGGGCGCA
GCGCGTGCTGGTGTAGGAGGCGCGCGAGGCGTTTCAGCGCGGTGGGTTCT
CCCTGGTGATGAACCGGCTTCAGAGGAGGTGGCGGGGCGTGTCGAGGGTC
TCGCTGGCGCTGGAAGACGTGCTCGGGCACCCCGTCAACGCCAACCTGTA
CATGACGCCGCCGGAGAGCCAGGGCTTCGAGGCGCACTTCGATTGGATGG
ACGGTGAGGGGGCGCAGCGCGTGCTGGTGTAG
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