mRNA_L-elsbetiae_contig2112.6431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2112.6431.1
Unique NamemRNA_L-elsbetiae_contig2112.6431.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2112.6431.1 vs. uniprot
Match: A0A6H5JG92_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG92_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.720e-19
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   13 RCTLEGARQLLAEGRVHCVVGP-SAAVHGASAPAXXXXXXXXXXXXXXXDAGTLTGTLEWAAQCMAHGRLLLPSAETCPWFPV 258
            RCT + A QLL EGRV+CV+G  S AV  ++A +               +AGTLTG+LEWA QCMAHGRLLLPSA TCPWFP+
Sbjct:  947 RCTHDAALQLLQEGRVYCVIGSESTAVRYSAARSEIQKAAV--------EAGTLTGSLEWALQCMAHGRLLLPSAATCPWFPL 1021
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BLAST of mRNA_L-elsbetiae_contig2112.6431.1 vs. uniprot
Match: D7FH86_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH86_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.050e-17
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   16 CTLEGARQLLAEGRVHCVVGP-SAAVHGASAPAXXXXXXXXXXXXXXXDAGTLTGTLEWAAQCMAHGRLLLPSAETCPWFPV 258
            CT + A QLL EGRV+CV+G  S AV  ++A +               +AGTL G+LEWA QCMAHGRLLLPSA TCPWFP+
Sbjct:  771 CTHDAALQLLQEGRVYCVIGSESTAVRVSTARSAIEKAAV--------EAGTLAGSLEWALQCMAHGRLLLPSAATCPWFPL 844
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BLAST of mRNA_L-elsbetiae_contig2112.6431.1 vs. uniprot
Match: D7FW83_ECTSI (BRCT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW83_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.940e-17
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   13 RCTLEGARQLLAEGRVHCVVGPSAAVHGASAPAXXXXXXXXXXXXXXXDAGTLTGTLEWAAQCMAHGRLLLPSAETCPWFPVG 261
            +CTLEGA +L+ +G+V CV+GP +A  G SA A                 GT  G+LEWA QC+ HGRLLLP+A TCPWFP+G
Sbjct: 1484 QCTLEGALKLVKDGQVFCVIGPKSA-DGGSASASTAAVEEAAEVM-----GTPAGSLEWATQCIIHGRLLLPNAGTCPWFPLG 1560
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2112.6431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JG92_9PHAE4.720e-1956.63BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FH86_ECTSI1.050e-1754.88BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FW83_ECTSI6.940e-1750.60BRCT domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2112contigL-elsbetiae_contig2112:7131..7407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3.2e-14
Seed eggNOG ortholog2880.D7FW83
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BRCA1 C Terminus (BRCT) domain
EggNOG OGs2CKM1@1,2S28W@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-13_004450.1
Exons1
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.3107817-CDS-L-elsbetiae_contig2112:7130..74061622815866.3107817-CDS-L-elsbetiae_contig2112:7130..7406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 7131..7406 +
1691683155.3672533-CDS-L-elsbetiae_contig2112:7130..74061691683155.3672533-CDS-L-elsbetiae_contig2112:7130..7406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 7131..7406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2112.6431.1prot_L-elsbetiae_contig2112.6431.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2112 7131..7406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2112.6431.1

>prot_L-elsbetiae_contig2112.6431.1 ID=prot_L-elsbetiae_contig2112.6431.1|Name=mRNA_L-elsbetiae_contig2112.6431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
KGDHRCTLEGARQLLAEGRVHCVVGPSAAVHGASAPAAAAAAAASAVMKA
AVDAGTLTGTLEWAAQCMAHGRLLLPSAETCPWFPVGVAAAG
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mRNA from alignment at L-elsbetiae_contig2112:7131..7407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2112.6431.1 ID=mRNA_L-elsbetiae_contig2112.6431.1|Name=mRNA_L-elsbetiae_contig2112.6431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=277bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:7131..7407+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGCGACCATCGGTGCACCCTCGAGGGGGCCCGCCAACTGCTGGCAGA
GGGGCGCGTACACTGCGTCGTAGGTCCCTCGGCGGCCGTGCACGGTGCTT
CCGCCCCGGCGGCGGCGGCGGCAGCGGCCGCGTCGGCCGTCATGAAGGCA
GCCGTGGACGCGGGCACGCTAACCGGCACGCTTGAGTGGGCCGCACAGTG
CATGGCTCACGGCCGCCTCCTCCTCCCGAGCGCCGAGACATGCCCGTGGT
TTCCGGTGGGCGTGGCGGCTGCAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2112:7131..7407+

>mRNA_L-elsbetiae_contig2112.6431.1 ID=mRNA_L-elsbetiae_contig2112.6431.1|Name=mRNA_L-elsbetiae_contig2112.6431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:7131..7407+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGCGACCATCGGTGCACCCTCGAGGGGGCCCGCCAACTGCTGGCAGA
GGGGCGCGTACACTGCGTCGTAGGTCCCTCGGCGGCCGTGCACGGTGCTT
CCGCCCCGGCGGCGGCGGCGGCAGCGGCCGCGTCGGCCGTCATGAAGGCA
GCCGTGGACGCGGGCACGCTAACCGGCACGCTTGAGTGGGCCGCACAGTG
CATGGCTCACGGCCGCCTCCTCCTCCCGAGCGCCGAGACATGCCCGTGGT
TTCCGGTGGGCGTGGCGGCTGCAGGGAAGGGCGACCATCGGTGCACCCTC
GAGGGGGCCCGCCAACTGCTGGCAGAGGGGCGCGTACACTGCGTCGTAGG
TCCCTCGGCGGCCGTGCACGGTGCTTCCGCCCCGGCGGCGGCGGCGGCAG
CGGCCGCGTCGGCCGTCATGAAGGCAGCCGTGGACGCGGGCACGCTAACC
GGCACGCTTGAGTGGGCCGCACAGTGCATGGCTCACGGCCGCCTCCTCCT
CCCGAGCGCCGAGACATGCCCGTGGTTTCCGGTGGGCGTGGCGGCTGCAG
GG
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