mRNA_L-elsbetiae_contig2112.6426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2112.6426.1
Unique NamemRNA_L-elsbetiae_contig2112.6426.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2112.6426.1 vs. uniprot
Match: A0A6H5JG92_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG92_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.590e-16
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  409 LSPGRWTYEAMVPFVRSEGWKCADGEGFHTWFLVSQAAE--GGRKTVDYLVTEEEVVDFVRRDR----HVLARYEAYCQGAVRA 642
            L P R  Y AM+PF+RSEGWKCADG+GFHTWF V  A E   G+K VDYLV+EEEVV +V R++     V  +    C+  +RA
Sbjct:  148 LDPARLEYPAMIPFLRSEGWKCADGKGFHTWFFVVPAKETHDGKKRVDYLVSEEEVVRYVLRNKGAELRVRRKVPHVCEVTLRA 231
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BLAST of mRNA_L-elsbetiae_contig2112.6426.1 vs. uniprot
Match: D7FW83_ECTSI (BRCT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW83_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.860e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  412 SPGRWTYEAMVPFVRSEGWKCADGEGFHTWFLVSQAAEG--GRKTVDYLVTEEEVVDFVRRDRHVLARYEAYCQGAVRAA 645
            SP   TY+AM+ F+  EGWKC  G+G HTWF +    +G  GR  +D+LV+EEEVV  VR D+  L+RYEA+ +   +AA
Sbjct:  772 SPEWLTYKAMISFLDVEGWKCVLGKGLHTWFYLLPGKKGRNGRYGLDFLVSEEEVVQHVRCDQPALSRYEAFLKAEAKAA 851
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2112.6426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG92_9PHAE2.590e-1653.57BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FW83_ECTSI3.860e-1348.75BRCT domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2112contigL-elsbetiae_contig2112:346..2507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog2880.D7FW83
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BRCA1 C Terminus (BRCT) domain
EggNOG OGs2CKM1@1,2S28W@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size755
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.1130853-CDS-L-elsbetiae_contig2112:345..4491622815866.1130853-CDS-L-elsbetiae_contig2112:345..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 346..449 +
1691683155.2933578-CDS-L-elsbetiae_contig2112:345..4491691683155.2933578-CDS-L-elsbetiae_contig2112:345..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 346..449 +
1622815866.1236231-CDS-L-elsbetiae_contig2112:1858..25071622815866.1236231-CDS-L-elsbetiae_contig2112:1858..2507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 1859..2507 +
1691683155.3086166-CDS-L-elsbetiae_contig2112:1858..25071691683155.3086166-CDS-L-elsbetiae_contig2112:1858..2507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 1859..2507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2112.6426.1prot_L-elsbetiae_contig2112.6426.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2112 346..2507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2112.6426.1

>prot_L-elsbetiae_contig2112.6426.1 ID=prot_L-elsbetiae_contig2112.6426.1|Name=mRNA_L-elsbetiae_contig2112.6426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=251bp
RARTHFTLGEERLHVSRIAGVTMGTSGSKPSPVLSDGISESEGNGTDAHA
GATGAPHPDLRRPPAKGAGQVKGEAKGKAKKRTKRAPPIAAHGPQEAERA
AKNDTAGKIAAAAAAAAGAGAGAGAGTGAAGAGAAPLSPGRWTYEAMVPF
VRSEGWKCADGEGFHTWFLVSQAAEGGRKTVDYLVTEEEVVDFVRRDRHV
LARYEAYCQGAVRAAGTGRSKQGGSGGVTGPGDRRVVASAASAAADGTRS
P
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mRNA from alignment at L-elsbetiae_contig2112:346..2507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2112.6426.1 ID=mRNA_L-elsbetiae_contig2112.6426.1|Name=mRNA_L-elsbetiae_contig2112.6426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2162bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:346..2507+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCACGGACGCACTTCACGCTGGGGGAGGAGAGGCTACACGTTAGTCG
GATAGCCGGCGTGACCATGGGGACGTCTGGGTCTAAGCCGAGCCCAGTAT
TAAGGTGAACCAACGCGGTGGGCTAAGTTTCTTGCCAGGATGCGGCGGGT
CTGGTGTGAGTGTATGTAGTTGTTAGGTTTGACCGCCGGTGTCGTGTGCG
CTTGGGTCCCGGCTTTAGTCCTAGGGCCAGAAATGATGAACCATCCATGC
TTTAAAGGAAACTGCGAGCTGGTGTGGGTGTGGCGTGTGTGGGCCACGGG
CTTTCTCCCTGCAGAAGATCCAATTGTGTGTTGCAACGAACCTGTAGATC
TAGACTAGTCTATCTAGCTACTAAGTAGTTCCACCCACCAAGCACGAGTC
AACATTAGTTTGCGAATAATGCACACACCCAACCCAACCCAACCCAACCC
AACCCAACCAGCACCGGCTCAATACCTTGCAGTAGTCTGACCAACCCACC
CGCGGACCCACGGCCCCAACCCCATCCAACCCAACCCAACCCGAAAGTGA
TGCCCTCTCTGTTGGCCGCTTGAGACCACCCACCTGAAGCACGAGTCAAC
AGTATTAGTAGTGCTGACAATCTCTCCCGTCATCTAAACATATCACTTCT
GGACAGTCTAGGTATTCTAGTCTAGCACACACAAGTGTTGCGGGTGAACC
TCCCCAACGTTTAGGGCGCACACACACAAGCCGCCACGTCTAGATCTATC
TAGGTCTGCAGCACCTGCTAGCCTAGCTGCCCCGCGCTCAGCATACAGCA
CTATGCTTCAGCACAGCACTCACTTCGGTGTCTCGAAGGGGGGTCAGCTA
CTCTGCTGTTCGAATTTCACCCTATGTACAGCAGTTGCGTTCCCAATCCG
ACAGCAACACTTGCACCCTCGCGCAGTACGTGTTTTGCGGGGAGCGCCTA
CCGTTGCATCGGTCCATGTGGGCGTCAAACGGCACATCGGAGATATGCGA
ACACTTATATTGCCTCCGGATCCGAAAATTATCCGAGTAAATTCCGCGTC
AGACTGCTGTTGTCTCAACGTGCCCGGCGGTCTTGCTTGATGGTGCTCGC
CGTATAGAGACACCGATCTTGCGAGCCTTCATATCTAGCATACTTGGACT
TGTTGTATCGCGGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTCCTGTGTC
CCTTGTTCATCTGTCAGTACGTTCCCCAGGCTTGATGTCATGCGCTCCGT
GCAGCAGGCGCACAACAAGGGCAGACCCTACGCTCTAGCTATAGCCTAGT
CTAGCAGAGAGCGCCCACGTCTTGTACATGGTTCATCCCGACGACTTCGT
ACAACGCATGACCGCTGCTACACCCACGCCCTCAGCTCGTGTGTCCTTCT
TCCTTTGCTCATGCTGCCATTCTCGGCGACTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTTCACTGTGTGTTGCGTTGTTTGTTTGT
CGAAACCCTCCAGTGACGGAATCTCCGAGAGTGAAGGCAACGGCACCGAC
GCCCACGCCGGCGCCACAGGAGCCCCCCACCCCGACCTCCGGCGCCCTCC
AGCTAAAGGCGCCGGCCAGGTCAAGGGCGAGGCCAAGGGCAAGGCCAAAA
AGAGGACCAAGAGAGCCCCGCCAATCGCAGCACACGGTCCCCAAGAGGCG
GAGCGGGCCGCGAAAAACGACACTGCCGGGAAAATCGCTGCTGCTGCCGC
CGCCGCCGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTACTGGTGCTGCTG
GTGCTGGTGCTGCTCCGCTCTCCCCCGGGAGATGGACGTACGAAGCAATG
GTCCCGTTTGTAAGGAGCGAGGGCTGGAAGTGCGCTGACGGCGAGGGGTT
TCACACCTGGTTCCTGGTCTCCCAGGCTGCGGAAGGGGGGAGGAAGACGG
TGGACTACTTGGTGACAGAGGAGGAAGTAGTCGACTTTGTTCGCCGCGAT
CGGCACGTCCTCGCTCGCTACGAGGCGTACTGCCAGGGCGCCGTGCGGGC
CGCGGGAACCGGGCGTTCCAAGCAGGGCGGCAGCGGAGGCGTTACCGGAC
CGGGAGACCGCCGTGTGGTGGCGTCGGCGGCGTCAGCGGCGGCGGACGGC
ACTCGCTCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2112:346..2507+

>mRNA_L-elsbetiae_contig2112.6426.1 ID=mRNA_L-elsbetiae_contig2112.6426.1|Name=mRNA_L-elsbetiae_contig2112.6426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1506bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:346..2507+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCACGGACGCACTTCACGCTGGGGGAGGAGAGGCTACACGTTAGTCG
GATAGCCGGCGTGACCATGGGGACGTCTGGGTCTAAGCCGAGCCCAGTAT
TAAGCGGGCACGGACGCACTTCACGCTGGGGGAGGAGAGGCTACACGTTA
GTCGGATAGCCGGCGTGACCATGGGGACGTCTGGGTCTAAGCCGAGCCCA
GTATTAAGTGACGGAATCTCCGAGAGTGAAGGCAACGGCACCGACGCCCA
CGCCGGCGCCACAGGAGCCCCCCACCCCGACCTCCGGCGCCCTCCAGCTA
AAGGCGCCGGCCAGGTCAAGGGCGAGGCCAAGGGCAAGGCCAAAAAGAGG
ACCAAGAGAGCCCCGCCAATCGCAGCACACGGTCCCCAAGAGGCGGAGCG
GGCCGCGAAAAACGACACTGCCGGGAAAATCGCTGCTGCTGCCGCCGCCG
CCGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTACTGGTGCTGCTGGTGCT
GGTGCTGCTCCGCTCTCCCCCGGGAGATGGACGTACGAAGCAATGGTCCC
GTTTGTAAGGAGCGAGGGCTGGAAGTGCGCTGACGGCGAGGGGTTTCACA
CCTGGTTCCTGGTCTCCCAGGCTGCGGAAGGGGGGAGGAAGACGGTGGAC
TACTTGGTGACAGAGGAGGAAGTAGTCGACTTTGTTCGCCGCGATCGGCA
CGTCCTCGCTCGCTACGAGGCGTACTGCCAGGGCGCCGTGCGGGCCGCGG
GAACCGGGCGTTCCAAGCAGGGCGGCAGCGGAGGCGTTACCGGACCGGGA
GACCGCCGTGTGGTGGCGTCGGCGGCGTCAGCGGCGGCGGACGGCACTCG
CTCCCCCTGACGGAATCTCCGAGAGTGAAGGCAACGGCACCGACGCCCAC
GCCGGCGCCACAGGAGCCCCCCACCCCGACCTCCGGCGCCCTCCAGCTAA
AGGCGCCGGCCAGGTCAAGGGCGAGGCCAAGGGCAAGGCCAAAAAGAGGA
CCAAGAGAGCCCCGCCAATCGCAGCACACGGTCCCCAAGAGGCGGAGCGG
GCCGCGAAAAACGACACTGCCGGGAAAATCGCTGCTGCTGCCGCCGCCGC
CGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTACTGGTGCTGCTGGTGCTG
GTGCTGCTCCGCTCTCCCCCGGGAGATGGACGTACGAAGCAATGGTCCCG
TTTGTAAGGAGCGAGGGCTGGAAGTGCGCTGACGGCGAGGGGTTTCACAC
CTGGTTCCTGGTCTCCCAGGCTGCGGAAGGGGGGAGGAAGACGGTGGACT
ACTTGGTGACAGAGGAGGAAGTAGTCGACTTTGTTCGCCGCGATCGGCAC
GTCCTCGCTCGCTACGAGGCGTACTGCCAGGGCGCCGTGCGGGCCGCGGG
AACCGGGCGTTCCAAGCAGGGCGGCAGCGGAGGCGTTACCGGACCGGGAG
ACCGCCGTGTGGTGGCGTCGGCGGCGTCAGCGGCGGCGGACGGCACTCGC
TCCCCC
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