mRNA_L-elsbetiae_contig210.6362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig210.6362.1
Unique NamemRNA_L-elsbetiae_contig210.6362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.290e-37
Identity = 67/103 (65.05%), Postives = 71/103 (68.93%), Query Frame = 2
Query:    5 DCMVVIFEGEDLDVTGDWNTYSDPLASGGEYIVWEGLSAGANNRDWQDGDIIRTTVEITVPGTYRFKWRMRQASDVESDKANDSWLTFPNAARFGPLDDDTNY 313
            DCMVVI E EDL V GDW    D  ASGG YI WEGLS   NNRD  DGDII T+V+I   GTY FKW MRQ   VESDKANDSWL FP+A RFGP D   +Y
Sbjct:  311 DCMVVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNRDPGDGDIISTSVQIPTAGTYSFKWAMRQPDGVESDKANDSWLNFPDADRFGPADTSKSY 413          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 4.250e-35
Identity = 65/103 (63.11%), Postives = 69/103 (66.99%), Query Frame = 2
Query:    5 DCMVVIFEGEDLDVTGDWNTYSDPLASGGEYIVWEGLSAGANNRDWQDGDIIRTTVEITVPGTYRFKWRMRQASDVESDKANDSWLTFPNAARFGPLDDDTNY 313
            DCMVVI E EDL V GDW    D  ASGG YI WEGLS   NN D  DGDII T+V+I   GTY FKW MRQ   VESDKANDSWL FP+A RFGP     +Y
Sbjct:  730 DCMVVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNSDPADGDIISTSVQIPTAGTYSFKWAMRQPDGVESDKANDSWLNFPDADRFGPAGTSKSY 832          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: UPI00036FD2D7 (Ig-like domain-containing protein n=1 Tax=Flexithrix dorotheae TaxID=70993 RepID=UPI00036FD2D7)

HSP 1 Score: 59.3 bits (142), Expect = 5.960e-8
Identity = 34/96 (35.42%), Postives = 46/96 (47.92%), Query Frame = 2
Query:   14 VVIFEGEDLDVTGDWNTYSDPLASGGE-YIVWEGLSAGANNRDWQDGDIIRTTVEITVPGTYRFKWRMRQASDVESDKANDSWLTFPNAARFGPLD 298
            ++I EGE+  +TGDW   SD     G+ YI W+    G N  D    DI+   + I   GTY+F+W  R A      + ND+W    NA  F   D
Sbjct: 1017 LLIIEGEEATLTGDWKFKSDLSGYTGQGYIEWD----GPNYFDKPVSDILTFNITINKTGTYKFQWHSRIAKGNLPSENNDTWFKVENAKMFAEED 1108          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: A0A150AHK4_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Flammeovirga sp. SJP92 TaxID=1775430 RepID=A0A150AHK4_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 7.920e-8
Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 2
Query:   14 VVIFEGEDLDVTGDWNTYSDP-LASGGEYIVWEGLSAGANNRDWQD-GDIIRTTVEITVPGTYRFKWRMRQASDVE--------SDKANDSWLTF 268
            V++FE E + + GDW   +D   ASGG+YI ++    G NN + Q+  + +  + +I  PGTY FKW +RQ  +          +D +ND+WL F
Sbjct:  331 VMVFEAERIPLRGDWKLGTDSEYASGGKYIYYD----GPNNYNAQNPANTLTYSFKINTPGTYTFKWFVRQNEEERGKVDGQQGTDLSNDAWLRF 421          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: UPI0009F81ED3 (T9SS type A sorting domain-containing protein n=1 Tax=Saccharicrinis aurantiacus TaxID=1849719 RepID=UPI0009F81ED3)

HSP 1 Score: 58.9 bits (141), Expect = 7.960e-8
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   14 VVIFEGEDLDVTGDWNTYSDPL-ASGGEYIVWEGLSAGANNRDWQD-GDIIRTTVEITVPGTYRFKWRMRQASD----VE----SDKANDSWLTFPNAARFGPLDDDTNY 313
            +++FE E +++ GDW   +D   ASGG+YI ++    G NN   Q+  + +  + +I  PGTY FKW +RQ  +    VE    +D +ND+W+ F +   +   D  T++
Sbjct:  339 LLVFEAERIELKGDWKLGTDDANASGGKYIYYD----GPNNYQAQNPANTLSYSFDINTPGTYTFKWFVRQNEEERGKVEGQQGTDLSNDAWIKFSDGIGYFGEDQVTDF 444          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: UPI0002559DEE (Ig-like domain-containing protein n=1 Tax=Ochrovirga pacifica TaxID=1042376 RepID=UPI0002559DEE)

HSP 1 Score: 56.6 bits (135), Expect = 5.150e-7
Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = 2
Query:   14 VVIFEGEDLDVTGDWNTYSDPL-ASGGEYIVWEGLSA-GANNRDWQDGDIIRTTVEITVPGTYRFKWRMRQASDVE-SDKANDSWLTF 268
            +++FE E  ++ G W   +D   ASGG+YI ++G ++ G  N        I  T +I  PGTY FKW MRQ      SD  ND+W  F
Sbjct:  463 LLVFEAERFELKGAWKLGTDAAKASGGKYIYYDGANSYGTVNPSHN----ISYTFKINNPGTYTFKWMMRQPEGERGSDLGNDAWFYF 546          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: UPI0009E46A51 (T9SS type A sorting domain-containing protein n=2 Tax=unclassified Flammeovirga TaxID=2637820 RepID=UPI0009E46A51)

HSP 1 Score: 53.5 bits (127), Expect = 6.170e-6
Identity = 32/95 (33.68%), Postives = 52/95 (54.74%), Query Frame = 2
Query:   14 VVIFEGEDLDVTGDWNTYSDP-LASGGEYIVWEGLSAGANNRDWQD-GDIIRTTVEITVPGTYRFKWRMRQASDVE--------SDKANDSWLTF 268
            +++FE E + + G W   +D   ASGG+YI ++    G N+ + Q+  + I  + +I  PGTY FKW +RQ  +          +D +ND+WL F
Sbjct:  337 LMVFEAERIPLKGAWKLGTDEQYASGGKYIYYD----GPNSYNAQNPANTITYSFKINTPGTYTFKWFVRQNEEERGKVDGQQGTDLSNDAWLRF 427          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: A0A3D9L0M2_MARFU (Putative secreted protein (Por secretion system target) n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9L0M2_MARFU)

HSP 1 Score: 53.1 bits (126), Expect = 8.490e-6
Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 2
Query:   14 VVIFEGEDLDVTGDWNTYSDPL-ASGGEYIVWEGLSAGANNRDWQDGDIIRTTVEITVPGTYRFKWRMRQASD----VE----SDKANDSWLTF 268
            +++FE E + + GDW   +D   ASGG+YI ++G +   N ++    + +  + +I  PG+Y FKW +RQ  +    VE    +D +ND+W+ F
Sbjct:  338 LLVFEAERIALKGDWKLGTDEEHASGGKYIYYDGPN---NYQNQAAKNTLSYSFKINTPGSYTFKWFVRQNEEERGKVEGKQGTDLSNDAWIRF 428          
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Match: A0A7X9RWX1_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Flammeovirga aprica JL-4 TaxID=694437 RepID=A0A7X9RWX1_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 5.450e-5
Identity = 30/95 (31.58%), Postives = 52/95 (54.74%), Query Frame = 2
Query:   14 VVIFEGEDLDVTGDWNTYSDP-LASGGEYIVWEGLSAGANNRDWQDG-DIIRTTVEITVPGTYRFKWRMRQASDVE--------SDKANDSWLTF 268
            +++FE E + + G W   +D   ASGG+YI ++    G N+ + Q+  + +  + +I  PGTY FKW +RQ  +          +D +ND+W+ F
Sbjct:  337 LMVFEAERIPLKGAWKLGTDDQYASGGKYIYYD----GPNSYNTQNAVNTLTYSFKINNPGTYTFKWFVRQNEEERGKVDGQQGTDLSNDAWVRF 427          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig210.6362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JMV6_9PHAE1.290e-3765.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LED7_ECTSI4.250e-3563.11EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
UPI00036FD2D75.960e-835.42Ig-like domain-containing protein n=1 Tax=Flexithr... [more]
A0A150AHK4_9BACT7.920e-835.79Por_Secre_tail domain-containing protein n=2 Tax=F... [more]
UPI0009F81ED37.960e-832.73T9SS type A sorting domain-containing protein n=1 ... [more]
UPI0002559DEE5.150e-738.64Ig-like domain-containing protein n=1 Tax=Ochrovir... [more]
UPI0009E46A516.170e-633.68T9SS type A sorting domain-containing protein n=2 ... [more]
A0A3D9L0M2_MARFU8.490e-632.98Putative secreted protein (Por secretion system ta... [more]
A0A7X9RWX1_9BACT5.450e-531.58T9SS type A sorting domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig210contigL-elsbetiae_contig210:30823..31150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue4.4e-28
Seed eggNOG ortholog2880.D8LED7
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons1
Model size330
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.9513297-UTR-L-elsbetiae_contig210:30822..308321622815861.9513297-UTR-L-elsbetiae_contig210:30822..30832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 30823..30832 +
1691683152.994911-UTR-L-elsbetiae_contig210:30822..308321691683152.994911-UTR-L-elsbetiae_contig210:30822..30832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 30823..30832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.963203-CDS-L-elsbetiae_contig210:30832..311501622815861.963203-CDS-L-elsbetiae_contig210:30832..31150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 30833..31150 +
1691683153.0075357-CDS-L-elsbetiae_contig210:30832..311501691683153.0075357-CDS-L-elsbetiae_contig210:30832..31150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 30833..31150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig210.6362.1prot_L-elsbetiae_contig210.6362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig210 30833..31150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig210.6362.1

>prot_L-elsbetiae_contig210.6362.1 ID=prot_L-elsbetiae_contig210.6362.1|Name=mRNA_L-elsbetiae_contig210.6362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MVVIFEGEDLDVTGDWNTYSDPLASGGEYIVWEGLSAGANNRDWQDGDII
RTTVEITVPGTYRFKWRMRQASDVESDKANDSWLTFPNAARFGPLDDDTN
YTDDRE
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mRNA from alignment at L-elsbetiae_contig210:30823..31150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig210.6362.1 ID=mRNA_L-elsbetiae_contig210.6362.1|Name=mRNA_L-elsbetiae_contig210.6362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=328bp|location=Sequence derived from alignment at L-elsbetiae_contig210:30823..31150+ (Laminarionema elsbetiae ELsaHSoW15)
CGACGATTGCATGGTCGTGATCTTCGAGGGCGAAGACCTCGATGTGACGG GCGACTGGAACACCTACTCGGACCCGCTTGCTAGCGGAGGAGAGTACATC GTCTGGGAGGGCTTGTCCGCGGGAGCCAACAACCGAGACTGGCAAGACGG TGACATCATCCGTACCACCGTCGAGATCACCGTTCCCGGCACCTACAGGT TCAAGTGGAGAATGCGCCAGGCTTCTGACGTCGAGAGCGACAAGGCGAAC GACAGCTGGCTGACCTTCCCCAACGCCGCACGCTTCGGTCCCTTAGACGA CGACACCAACTACACGGATGACCGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig210:30823..31150+

>mRNA_L-elsbetiae_contig210.6362.1 ID=mRNA_L-elsbetiae_contig210.6362.1|Name=mRNA_L-elsbetiae_contig210.6362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig210:30823..31150+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGTGATCTTCGAGGGCGAAGACCTCGATGTGACGGGCGACTGGAA
CACCTACTCGGACCCGCTTGCTAGCGGAGGAGAGTACATCGTCTGGGAGG
GCTTGTCCGCGGGAGCCAACAACCGAGACTGGCAAGACGGTGACATCATC
CGTACCACCGTCGAGATCACCGTTCCCGGCACCTACAGGTTCAAGTGGAG
AATGCGCCAGGCTTCTGACGTCGAGAGCGACAAGGCGAACGACAGCTGGC
TGACCTTCCCCAACGCCGCACGCTTCGGTCCCTTAGACGACGACACCAAC
TACACGGATGACCGGGAGATGGTCGTGATCTTCGAGGGCGAAGACCTCGA
TGTGACGGGCGACTGGAACACCTACTCGGACCCGCTTGCTAGCGGAGGAG
AGTACATCGTCTGGGAGGGCTTGTCCGCGGGAGCCAACAACCGAGACTGG
CAAGACGGTGACATCATCCGTACCACCGTCGAGATCACCGTTCCCGGCAC
CTACAGGTTCAAGTGGAGAATGCGCCAGGCTTCTGACGTCGAGAGCGACA
AGGCGAACGACAGCTGGCTGACCTTCCCCAACGCCGCACGCTTCGGTCCC
TTAGACGACGACACCAACTACACGGATGACCGGGAG
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