mRNA_L-elsbetiae_contig2087.6311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2087.6311.1
Unique NamemRNA_L-elsbetiae_contig2087.6311.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: D7FN64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN64_ECTSI)

HSP 1 Score: 379 bits (973), Expect = 3.040e-123
Identity = 208/353 (58.92%), Postives = 239/353 (67.71%), Query Frame = 3
Query:  225 PSTWWDVLTLDLNLGGLLRESSLGL---ISVFGTVLAFVRPTIPGDCPRILRILLPVVAWFFFSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQT-DGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTSRWGHMIGAHYLKHFKNGDYPSSKLHEYMVNQTIAPESIVSSPH 1271
            P TW DVLTLDL L  LL+ES   +   IS+FGT+LAFVRPTIPGD PR+LR LLP+VAW  FSDEATV        GSPESFFYVNGICTTRRMA  TG ELS+MF + VTVVHNPTDS ++DIFEC+FAKLW GQSF+TSRP +LL+D+LLE LRDP KTKVV+                QGTI                           +++ +   +  AV      D   L+     + MKKLE+YNLANA+HWM QT D  PYIESICNQRDTVGMLGANAP+SVKQ WNI IAGP++YPTT+RWGHMI AHYLKH KNGDYP SKLH YM N    PE IV++ H
Sbjct:    2 PGTWLDVLTLDLGLDDLLKESKSSITSFISMFGTLLAFVRPTIPGDSPRVLRTLLPLVAWVVFSDEATVTPDQLVDDGSPESFFYVNGICTTRRMALATGAELSKMFNKNVTVVHNPTDSFIVDIFECVFAKLWTGQSFATSRPCALLMDRLLEALRDPTKTKVVLIAHS------------QGTI---------------------------IASDALRRLWTAV------DKGELT----HDEMKKLEIYNLANAAHWMDQTEDRVPYIESICNQRDTVGMLGANAPESVKQSWNIRIAGPVVYPTTNRWGHMISAHYLKHLKNGDYPGSKLHTYM-NTAKEPEYIVAASH 304          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A0G4GTY4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GTY4_VITBC)

HSP 1 Score: 107 bits (267), Expect = 2.520e-21
Identity = 102/380 (26.84%), Postives = 162/380 (42.63%), Query Frame = 3
Query:  123 DNPPTLLNAICCSIVPLLLILWNQVFLILGVAGFPSTWWDVLTLDLNLGGLLRESSLGLISVFGTVLAFVRPTIPGDCPRILRILLP--VVAWFFFSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQTDGFPY---IESICNQRDTVGMLGANAPK-----SVKQMWNIDIAGPLIYPTTSRWGHMIGAHYLKHFKNGDYPSSKLHEYMVN 1232
            DNP TL + I   +          ++ +LG+ G P TW  ++   L  G +      GL+ VF T++    P +P D P   R      +    F     T      + R   E++ YVNG+ T   +A +  K L ++FGR +TVVHNPTDS ++D+ EC+  KL     +    P  ++L + +E   D  KTKVV+                QGTI +                                +VL+ +         H++     +A KKLE+Y  A+ +H +       +   +ES+CN  DTV +LG   P+      V +   +      +     + GH++  HYL++F N +Y  S LH+Y+VN
Sbjct:   73 DNPITLGDLISLPV--------GLLYAVLGIIGGPWTWMCMVKTLLEPGVID-----GLVCVFETLV----PAVPCDPPNWCRQYFGDFITRLLFRESSMTKPVPAENDRHPDEAWIYVNGVGTGMPIAVENAKRLVELFGRSITVVHNPTDSFIVDLLECVAGKLKLMWWWKVE-PVGVVL-RTVEQAFDQGKTKVVLIGHS------------QGTIIVN-------------------------------NVLDRIAR------KHINSPPDLKAQKKLEVYLFADCAHHIDTASLEQHSICVESLCNSYDTVALLGGTYPRPETWRDVTEEQRVVNKRVRVVVQDGKGGHLLNTHYLENFAN-EYKGSHLHQYLVN 383          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A261GNK6_9GAMM (Uncharacterized protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GNK6_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 4.200e-18
Identity = 90/305 (29.51%), Postives = 136/305 (44.59%), Query Frame = 3
Query:  360 RILRILLPVVAWFFF------SDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFST----SRPESLLLDKL------LEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQ------EAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPT-TSRWGHMIGAHYL 1175
            R LR +LP V   FF        +     S++S     E +F++NG+ T   +A+     LS++F RP TV+HN TDS ++D+ EC       G++F T    S+P+++    +      LE L+DP K KVV+    C +         QGTI +TA+    L            D D   +    + +++ + L   +    L   KK+      + M ++E+Y  AN +  M           +  G PYIE+  NQ D V  LG  +P        I I GPL   T  S WGH++  HYL
Sbjct:  109 RWLRTILPPVVQHFFWRPSNYFQQPDPFASDNSFAN--EQWFFINGVATNEAVAHINSTLLSKLFYRPFTVIHNATDSLVVDLLECA-----VGKTFKTDPNLSKPQTMTEPTIKATIAILEALKDPQKDKVVVI---CHS---------QGTI-ITANVLRALRRALLHIDLLRQDPDSLPALD--LQLIDELALEILLRGDLLQKTKKELDEYLTQIMSRMEVYTFANCADRMTYVAEVKNNKGEKVGLPYIENFANQFDLVARLGVLSPLKESDPSLIKIDGPLFEKTGMSAWGHLLNQHYL 391          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A6FCX3_9GAMM (Uncharacterized protein n=3 Tax=Moritella TaxID=58050 RepID=A6FCX3_9GAMM)

HSP 1 Score: 91.7 bits (226), Expect = 7.010e-16
Identity = 90/314 (28.66%), Postives = 134/314 (42.68%), Query Frame = 3
Query:  345 PGDCPRILRILLPVVAWFF-----FSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWA-----GQSFSTSRPESLLLDKLLEVLRDPMKTKVVM-CFAG--------CRNMSKSASWIR------QGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTS--RWGHMIGAHYL 1175
            PG   R L  L PVV   F     +  +A  + S +S     E + YVNGI T   +A    + LSQ+F RP+TVVHN TDS ++D+ +C+  K++          S + P       +L+ L+DP K +VV+ C +          R + KS S I+      +  + L  ++   L+F  F      T  D                    +D   +S+      MKKLE+Y  AN +  M           +  G PYIE+  NQ D V  LG  +P  +++  NI      +Y       WGH++  HYL
Sbjct:  104 PGPWARTL--LPPVVQNLFWRPSNYFQQADPLVSVTSFIN--EQWIYVNGIATNEDVAMMNSELLSQLFKRPLTVVHNQTDSTILDLMQCVTGKVFKTNPNLNDEQSMTEPAVKATVAVLDALKDPTKDRVVLLCHSQGTIITANVLRALQKSVSQIKAVHQAPELKLTLQLNHLERLAFELFWMEAIVTFSD------------------AELDSYLVSM------MKKLEVYTFANCADKMNYVCHSTNNKGELIGLPYIENFANQFDLVARLGVLSP--LREEGNIIEIDGAVYEKQGGHAWGHLLNQHYL 387          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A3T0VVF2_9GAMM (Uncharacterized protein n=3 Tax=Hahella TaxID=158481 RepID=A0A3T0VVF2_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 2.470e-15
Identity = 88/312 (28.21%), Postives = 131/312 (41.99%), Query Frame = 3
Query:  357 PRILRILLPVVAWFFFSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSF----------STSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPP----VDPLHLSLYKKQEAMKKLEMYNLANASHWMKQ-------------TDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTT-SRWGHMIGAHYLKHFKNGDYPSS 1208
            P I R+      +F  +D    +TS S      E +F++NGI T + +A    + +SQMF RPVTV+HN T S L+D+F+C       G+SF          + + P+      LLE +++P   +VV+    C +         QGTI       A     +     +   +    +    +  L    L P     +D    + Y  +  +KKLE+Y  AN ++ M                   PYIE+  NQ D V  LG  +P        IDI GPL   T    WGH++  HYL  +   DY S+
Sbjct:  109 PFINRLFWRPSGYFQQTDPFDSVTSFSH-----ERWFFLNGILTNKPIAELNSQLISQMFQRPVTVIHNQTSSFLLDLFQCA-----VGKSFKIDPDLEIPQAMTEPDVKATIALLEAMKNPALDRVVLL---CHS---------QGTIIAANVLRAISRALKALQKLKDNPECNDWANLEFIDRLALAHLTPDQFGLMDKSGFNAYAIK-LLKKLEVYTFANCANTMTYIAKVNMPIEMGGGVTALPYIENFANQYDLVARLGVISPLREAGSSIIDIDGPLYLRTDIDAWGHLLNQHYL--YAISDYLSA 395          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A090IJT7_9GAMM (Uncharacterized protein n=8 Tax=Moritella TaxID=58050 RepID=A0A090IJT7_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 1.260e-14
Identity = 90/310 (29.03%), Postives = 132/310 (42.58%), Query Frame = 3
Query:  336 PTIP-GDCPRILRILLPVVAWFF-----FSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWA-----GQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFL--SFTRFSFPTRPTDKDYPMSTRSCMSV------LEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTS-RWGHMIGAHYL 1175
            P  P G  P    +L PVV   F     +  +A  + S +S     E + YVNGI T   +A    + LS +F RP+TVVHN TDS ++D+ +C+  K++          S + P       +LE L+DP K +VV+    C +         QGTI +TA+    L  S ++     +  +    +       +      +EA+      D L   L      MKKLE+Y  AN +  M           +  G PYIE+  NQ D V  LG  +P        I+I G +        WGH++  HYL
Sbjct:   98 PAFPHGPGPWARTLLPPVVQNVFWRPSHYFQQADPLASVTSFIN--EQWIYVNGIATNEDVAMMNAELLSHLFKRPLTVVHNQTDSMILDLVQCVTGKVFKTNPNLDDEQSMTEPAVKATIAVLEALKDPAKERVVLL---CHS---------QGTI-ITANVLRALQKSISQIKVVHQAPEMQLTLQLNHLERLAFDLFWMEAIFTFTN-DELDSYLVSM---MKKLEVYTFANCADKMNYVCHSTNSCGELIGLPYIENFANQFDLVARLGVLSPLREDGSDIIEIDGAVYEKIGGGAWGHLLNQHYL 388          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: UPI000367A2BF (hypothetical protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI000367A2BF)

HSP 1 Score: 84.0 bits (206), Expect = 2.580e-13
Identity = 76/260 (29.23%), Postives = 106/260 (40.77%), Query Frame = 3
Query:  456 ESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWA-----GQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQ----EAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPT-TSRWGHMIGAHYL 1175
            E +F++NG+ T   +A      LS++F RP+TVVHN TDS ++D+ +    K +       +  + + P       +LE L+ P K KVV+    C +         QGTI       A     R            P      +  L    L+   D L  S    Q      + KLE+Y  AN +  M            T G PYIE+  NQ D V  LG  +P        I I GPL   T  + WGH++  HYL
Sbjct:  166 EHWFFINGVATNEPVARMNSVLLSKLFNRPLTVVHNETDSLILDLLQAAIGKTFKTDPSLSKYQTMTEPTIKATLAILEALKAPDKDKVVVI---CHS---------QGTIIAANVLRALGKALRHVNQLHKDPGSLPTLDLQFIDELALEVLLRG-DILEKSNTDLQTYLTRLLSKLEVYTFANCADRMTYVAEVKNHHGDTIGLPYIENFANQFDLVARLGVLSPLRESDPSLIKIDGPLFEKTGLAAWGHLLNQHYL 412          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A7S2KLI0_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KLI0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.830e-12
Identity = 70/260 (26.92%), Postives = 111/260 (42.69%), Query Frame = 3
Query:  456 ESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKD-YPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYP------TTSRWGHMIGAHYLKHFKNGDYPSSKL 1214
            E + + NGI      A +  K++++MFGRP  ++HNPTD  ++D+ EC+  K    +   T  P  LL + L + ++     K+V+                QGTI ++ +  A        F  R  DK+ Y +  R  +                      ++ M KLE+Y  A A+H+M       ++E + N+ D V +LG   P  +K +W       +IY        TS WGH    HYL   + G +  SKL
Sbjct:  190 ELWIFCNGIMNDVDDAKRACKKITEMFGRPCKLLHNPTDGPILDLLECLMGKTGLFRLGCTG-PRKLLRNILDKEMKKDCYKKIVLVAHS------------QGTI-ISGNVIA-------DFNDRIEDKEKYTVEEREVI----------------------KKNMSKLEVYIFAGAAHYMSGKY-VSHLECLSNRGDVVAVLGHIFPNILKSIWRNTRGNGIIYDHCKDHVETSNWGHSFIPHYLAPMEKGCFSGSKL 405          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A7S1JPN1_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JPN1_9ALVE)

HSP 1 Score: 75.5 bits (184), Expect = 7.970e-12
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  294 GLISVFGTVLAFVRPTIPGDCPRILRILL-PVVAWFFFSDEATV-MTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVM 713
            GL+ VF T++    P +P D P   R      + W  F + +T  +      R   E++ YVNG+ T   +A +  K L ++FGR +TVVHNPTDS ++D+ EC+  KL     +    P  ++L + +E   D  KTKVV+
Sbjct:   15 GLLCVFETLV----PAVPCDPPNWCRQYFGDFITWLLFREGSTTKLVQAEDDRHPDEAWIYVNGVGTGMPIAVENAKRLVELFGRSITVVHNPTDSFIVDLLECVAGKLKLMWWWKVE-PVGVVL-RTVEQAFDQGKTKVVL 150          
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A7S1JP67_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JP67_9ALVE)

HSP 1 Score: 76.6 bits (187), Expect = 9.690e-12
Identity = 83/319 (26.02%), Postives = 131/319 (41.07%), Query Frame = 3
Query:  294 GLISVFGTVLAFVRPTIPGDCPRILRILL-PVVAWFFFSDEATV-MTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQTDG-FPYI---ESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTSRWGHMIGAHYLKHFKNGDYPSSKLHEYMVN 1232
            GL+ VF T++    P +P D P   R      + W  F + +T  +      R   E++ YVNG+ T   +A +  K L ++FGR +TVVHNPTDS ++D+ EC+  KL     +    P  ++L + +E   D  KTKVV+                QGTI +                                +VL+ +       P  L   KK E   ++E  +L N+   +    G +P       +  Q+  V        K V+           +     + GH++  HYL +F N +Y  S+LH+Y+VN
Sbjct:   15 GLLCVFETLV----PAVPCDPPNWCRQYFGDFITWLLFREGSTTKLVQAEDDRHPDEAWIYVNGVGTGMPIAVENAKRLVELFGRSITVVHNPTDSFIVDLLECVAGKLKLMWWWKVE-PVGVVL-RTVEQAFDQGKTKVVLIGHS------------QGTIIVN-------------------------------NVLDRIARKHINSPPDLKAQKKLEHSIRVE--SLCNSYDTVALLGGAYPRPGTWRDVTKQQRVVN-------KRVR-----------VVVQDGKGGHLLNTHYLDNFAN-EYKGSRLHQYLVN 263          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FN64_ECTSI3.040e-12358.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4GTY4_VITBC2.520e-2126.84Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A261GNK6_9GAMM4.200e-1829.51Uncharacterized protein n=1 Tax=Hahella sp. CCB-MM... [more]
A6FCX3_9GAMM7.010e-1628.66Uncharacterized protein n=3 Tax=Moritella TaxID=58... [more]
A0A3T0VVF2_9GAMM2.470e-1528.21Uncharacterized protein n=3 Tax=Hahella TaxID=1584... [more]
A0A090IJT7_9GAMM1.260e-1429.03Uncharacterized protein n=8 Tax=Moritella TaxID=58... [more]
UPI000367A2BF2.580e-1329.23hypothetical protein n=1 Tax=Hahella ganghwensis T... [more]
A0A7S2KLI0_9STRA2.830e-1226.92Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S1JPN1_9ALVE7.970e-1234.51Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A7S1JP67_9ALVE9.690e-1226.02Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2087contigL-elsbetiae_contig2087:5836..10673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.4
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog1201293.AKXQ01000001_gene1995
Hectar predicted targeting categorysignal anchor
EggNOG OGs1NTA9@1224,1SMRP@1236,2C777@1,33SGB@2
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-06_008550.1
Exons6
Model size2193
Cds size1212
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2087.6311.1prot_L-elsbetiae_contig2087.6311.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2087 5901..9757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.1060505-UTR-L-elsbetiae_contig2087:5835..59001622815857.1060505-UTR-L-elsbetiae_contig2087:5835..5900Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2087 5836..5900 +
1691683149.608937-UTR-L-elsbetiae_contig2087:5835..59001691683149.608937-UTR-L-elsbetiae_contig2087:5835..5900Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2087 5836..5900 +
1622815857.1878004-UTR-L-elsbetiae_contig2087:9757..106731622815857.1878004-UTR-L-elsbetiae_contig2087:9757..10673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2087 9758..10673 +
1691683149.681382-UTR-L-elsbetiae_contig2087:9757..106731691683149.681382-UTR-L-elsbetiae_contig2087:9757..10673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2087 9758..10673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.1176763-CDS-L-elsbetiae_contig2087:5900..59881622815857.1176763-CDS-L-elsbetiae_contig2087:5900..5988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 5901..5988 +
1691683149.6226392-CDS-L-elsbetiae_contig2087:5900..59881691683149.6226392-CDS-L-elsbetiae_contig2087:5900..5988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 5901..5988 +
1622815857.1311607-CDS-L-elsbetiae_contig2087:6150..61911622815857.1311607-CDS-L-elsbetiae_contig2087:6150..6191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 6151..6191 +
1691683149.635281-CDS-L-elsbetiae_contig2087:6150..61911691683149.635281-CDS-L-elsbetiae_contig2087:6150..6191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 6151..6191 +
1622815857.14146-CDS-L-elsbetiae_contig2087:6428..66561622815857.14146-CDS-L-elsbetiae_contig2087:6428..6656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 6429..6656 +
1691683149.646276-CDS-L-elsbetiae_contig2087:6428..66561691683149.646276-CDS-L-elsbetiae_contig2087:6428..6656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 6429..6656 +
1622815857.1515284-CDS-L-elsbetiae_contig2087:6953..72371622815857.1515284-CDS-L-elsbetiae_contig2087:6953..7237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 6954..7237 +
1691683149.6552587-CDS-L-elsbetiae_contig2087:6953..72371691683149.6552587-CDS-L-elsbetiae_contig2087:6953..7237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 6954..7237 +
1622815857.1614218-CDS-L-elsbetiae_contig2087:8809..91551622815857.1614218-CDS-L-elsbetiae_contig2087:8809..9155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 8810..9155 +
1691683149.6635303-CDS-L-elsbetiae_contig2087:8809..91551691683149.6635303-CDS-L-elsbetiae_contig2087:8809..9155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 8810..9155 +
1622815857.1760077-CDS-L-elsbetiae_contig2087:9532..97571622815857.1760077-CDS-L-elsbetiae_contig2087:9532..9757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 9533..9757 +
1691683149.6724215-CDS-L-elsbetiae_contig2087:9532..97571691683149.6724215-CDS-L-elsbetiae_contig2087:9532..9757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2087 9533..9757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2087.6311.1

>prot_L-elsbetiae_contig2087.6311.1 ID=prot_L-elsbetiae_contig2087.6311.1|Name=mRNA_L-elsbetiae_contig2087.6311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=404bp
MERPPRVWRLWMLFERPCPDNPPTLLNAICCSIVPLLLILWNQVFLILGV
AGFPSTWWDVLTLDLNLGGLLRESSLGLISVFGTVLAFVRPTIPGDCPRI
LRILLPVVAWFFFSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTG
KELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLD
KLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTR
FSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLE
MYNLANASHWMKQTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIA
GPLIYPTTSRWGHMIGAHYLKHFKNGDYPSSKLHEYMVNQTIAPESIVSS
PHS*
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mRNA from alignment at L-elsbetiae_contig2087:5836..10673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2087.6311.1 ID=mRNA_L-elsbetiae_contig2087.6311.1|Name=mRNA_L-elsbetiae_contig2087.6311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4838bp|location=Sequence derived from alignment at L-elsbetiae_contig2087:5836..10673+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCATCACACCGGAAGCACGATACTATCGCTGCCAAGAGCAGGAGGTTA TTTCAAGACAGGACCATGGAGCGACCACCGAGAGTATGGAGGCTATGGAT GCTTTTCGAGCGGCCCTGCCCCGACAACCCCCCGACCCTTCTCAACGCGA TCTGTGAGACACTTTGATCAGGCAGAATCCTTTTATTTCGGACACAGATG GCGGGTTTGTGCAAAGCAGCACGCTCGCACAAATCTTCTGGTACACACAA CTGCTATCGTCCAGGCTTTATATGCTAGCTGAGCACGCACCCTGCTTCCG TCCGCCTCTACGCAGGCTGCAGCATCGTGCCGCTCTTGCTGATCCTGTGG AATCAGGTGAGAGAGGGAGAACCGTATCGTGTTTTATTGGGAGGATACTA TCACGGCGTCACGCACACCGTGCCGCACCCATCTGACATACACGACACAC GGCTACACGCACATCTATGCAGGCATACATAGATGTATGTACCTATGAGC TTCCCCGTCACATTTCTGACAAATATGCGGGGGAATGCGGGGGGAATATG CGTCGGCAACTCTCAACTCTCGGCTACAAAAATATATATTCAGGTGTTTT TGATTCTAGGGGTGGCTGGCTTCCCGTCAACCTGGTGGGATGTGCTCACT CTGGATTTGAACTTGGGCGGGCTGCTCCGCGAATCTTCTCTCGGCCTCAT CTCCGTGTTTGGAACCGTCTTGGCGTTCGTGCGACCCACAATTCCTGGAG ACTGTCCTCGGATACTGCGCATTCTCTTGCCGGTGGTAGCTTGGTTCTTC TTCTCCGATGAGGCCACGGTGGTGAGTACGATCGTTCGCGGCGAGGATTA GACTATGTATTATCTGTACAAGTATATATACTGTAGGTACAATGGAGGAT CCGTGCCTATGTATGTGCATGCTACTAGAACCTATAGAACCCCAAATCTT GTAGACTTATGTATCTAGATGTTCTAGATAAATGTTCTACAGACATCGTG CTACTGTTCGGTCCTGTTCCATATGTACGCCCGAGCGTTCAGCGTGATGG CTCTCATTCTTGTTTTTGCTCTTTGACATGTTTCGCCTGTCAAACTCTTG TTATTGCCGCTGTGTCAGATGACCAGCAACAGCAGTATCCGTGGTAGCCC GGAGAGCTTTTTCTACGTGAACGGCATCTGCACCACGCGCAGAATGGCGT ACAAAACGGGCAAAGAACTAAGCCAGATGTTCGGCCGACCGGTCACCGTC GTCCACAACCCCACCGATTCTGCTTTAATCGACATCTTCGAATGCATATT CGCAAAGCTGTGGGCCGGGCAAAGCTTTTCGACGAGCAGGCCCGAATCCC TGCTTTTGGACAAGCTGCTGGAAGTCTTGAGGGACCCCATGAAAACGAAA GTAAGCGTTCACTACTGCTGTTGTTGTAGCGTACACTGGTCTTCAGGGTG TTCGGCTGGGCTCTCTGTCTCTCTGTCTCTCTGTCTGTCTGTCTGTCTGT CTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTATGTGTGTGTCGCTATGTGTGTGTCGCTCT AACGCTTCATTCAGTCGATGATGTTCGCTCCTTCCTCCTGATGATGATGT CGATAAACTACTGCGGTGTAGACTACACAAGGATCCAAATTCTGGACACA TAGCCCCCCCCTCCCCCTCGAAACTAAAATTTCGAATTTATATAAGAAAT GGTGCAGGGGGCAGGTTCCGTGGTAAAGCCGGATTGCTCGTGCGGGCTCG AGGAAAAAAAATATCGAAAAATCGACTTCGTGGGTCGTTCTGAAACGCTC AAAAAAGGGGTTTAAAAAGTAGGAGGAAAAAAAAAAGTTGCCCTTCAAGT CGAACTTTTTTTTTCACAGCCTTCCCGAACTTTTTTGTTCCCTTCCTCCT CGCCAATCGATTCCGCTTGGTCGATTTAGGGGGGATAGAGGCACTCAGAA CGTTGATCAGACAAAAACTGGTGCCCGCATCAGGATTTCAAAAATCTCCG GAAAATTGAAAATGCCCACACAAGCCCAGCAATTACACACCGATATGTCG ACCGCATTGATTGCCGAAATAGGGTATTCTGATGATATATTCGTGACCCC CGATCCAAAATTACCCCACATTGAAGTCTGCAGAGCTTGAATCAGCATGT GGAACGTATGCCCGGGGAGGGGATATTTTATAGTAACTCCAATACAAACC CAAGTTGTCGGCGGTAATGAAGTACAAGCAAGATATACTTCAAGTATATC GCTGTAACTCTGTACCGGTTGCGAATCGTAACTTCCCGACCACGGATTCT TCATCCCCACCCTAAAAATACCATAACCTGAAATTTTCAGATTGATCGGA GCACTTTTCAACCCCCCGGGGATTTTTTGAGGCCATCCCCGGGGTCTGCA TGTTCGTATATTACCTATGGGAAATTACTAAAATGGGTTGAAACCCGGGC TCCCCCATTCCAAAAACAATAAAAAAGCCATATTCTGTCATTCGTATGTT GTAAGATCTTGGGAAAAAAAATCAGATATTAGGGGGCACGCGATAAGAAT CCGCACCCCCACCCCTAAAACAAATCCGGCTTTACCGCGAAACCTGCCAG GGGAATCAATTTAAGGATAAATACGTCCCCCCCCCCCGCCCCCCCCGCTG GAATCTGCGCCCCCCCCCCCACAGCAAGTATATGGGCTACAGTATCCCCC CCCCCCCCTGCTATTACCCAAACTCTCGATCTTGAGGCCGATGTGCCCAG AATTTTGATCCTGGTACACCCCTTGCTACTATAGATACCTGGTAGCCTCG GCTTATCAGTGGCTATCACGCTTAGTGTTGCGGTGCTGAGAACTCTTCCC TCCATGATTCTACCATGCTCTTGTCGCCGTTGCAGGTGGTTCTCATCGCA CACTCGCAGGGAACCATTATCGCGGGTGATGTGCTTCGCCGGCTGCAGAA ATATGTCGAAGTCGGCGAGCTGGATCAGGCAAGGAACAATCTGGCTCACG GCTCACTACGAAGCGTTTTTGTCATTTACCAGGTTCAGTTTTCCGACGCG TCCGACAGACAAGGATTACCCGATGAGCACGCGTTCATGCATGTCAGTTT TGGAGGCGGTCTGTCTCATTCCTCCGGTCGACCCCCTTCACCTCTCTCTT TACAAGAAACAGGAAGCCATGAAGAAGCTGGAAATGTACAACCTGGCCAA CGCGTCTCACTGGATGAAGCAGACAGATGGGTTCCCCTACATCGAATCTA TCTGCAACCAGCGCGACACGGTCAGTGCGTCACCAGCTCATGTTTTTGTC TTTTTCTGCGAGGGAAGACGACTATGTTTATAAAAAGGTTGCAGTCGCGG TGATCGGCGAGTCCAGCTATCAGTACGTACGACGACCGTTTTTCATGATG CCGTGAGGGGTTGACTGGCCGAAGGGTGGACTGCCTTCGCGAGAAAAAAC GGGGAATATTGATTTATATGTGAAATAGAGCAGTAGGGGTTCCGTAACCC TAACCCTAACCGTAACCCTAACCACCGACCCCCCAAACATTCCCCGATTC CATACTTTATCCCGTACGTTTCGCTGAACAAAAACCTGCGTAGACTACCC CGAAGGGTGGCGCACCAACATATTCTTCCTCCACGCCCGTCCTGCAGGTC GGTATGCTGGGCGCTAACGCCCCCAAGAGCGTAAAGCAGATGTGGAACAT CGACATCGCGGGTCCACTCATCTACCCGACCACCAGCCGCTGGGGACACA TGATCGGTGCCCACTACTTGAAGCACTTCAAGAACGGGGACTATCCGAGC TCCAAACTTCACGAGTACATGGTGAACCAGACCATCGCGCCGGAGAGCAT TGTCTCTTCCCCTCACTCGTGATGCGGCTGTGTTCCGTGTATCTTTCGAG TTTTGCGGTTGCTGCCTCCGACGGAAAACAGTTTTTGTACTGGTTTACAG CTTCATTTGTATAGTTAATAAGGGTATTTGTTTGTCACCCATCAGCTTCA TACGGCTGAATTTTTGAATCACTCGTCATCTTGTACAGTATGTGGTGTGT GCGAATCATCAAGTCAGCTACATATTAACATGGGATGGGTGAAATTAGTG TTTATTGTTGCTTCATCTGTATATTTCTGGTTGCAACTTGAGCCTTGGGT TCTTGTGGGGTTTATAAATCGCTCTCATAGCGTTACATTTGAAATTATCC TCGCCCGAGGGAACGCAAAGCTACAGAACCTCGACCCATGCTTTTGGGGG GATACTACTGTGCAGCTTTGACGATAAGGCAGCAGGAGTAGATAAATGGG TTTGTTTTGAGGCAGCTTGATTGAGTCCACAAAAAGCACCTTTGAATGAG TAGCTAGGGGTGCAGGGGGACACGACTGATGATCGTGAACGGTACATTGC AGTTCCGAGTCTACAGTGCACGGCTTTCCCTCTGATACGTATCGGTCCCA GTTGTTTTTTGCTTGCTAGGAGCACCCACGGGGGGGTGTATGTACTCTGC GAACGAGCAATCAGAATCTGCGTAGTTGTTGCAACGGACAATGGACGCGC CGAAACACAGAATCCGATTGCTTTCCATGTACGTACACATCGAACACGAC AAAAATCACCATTTGTATTCTTGTTGCGCTTCAGTGGTGGCCAGATAATA AGCACCACAACTGTTGCCAGCAATCATGCCACAAACTCCGGGACACAAAT AATGCCACAAACTCCGCTCAACTTGAGGAAACACTCGAACACATTTTTGC GTGTGTACATACGGGGGGCTGAGCTTTTCAGGGCGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2087:5836..10673+

>mRNA_L-elsbetiae_contig2087.6311.1 ID=mRNA_L-elsbetiae_contig2087.6311.1|Name=mRNA_L-elsbetiae_contig2087.6311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2424bp|location=Sequence derived from alignment at L-elsbetiae_contig2087:5836..10673+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGACCACCGAGAGTATGGAGGCTATGGATGCTTTTCGAGCGGCC
CTGCCCCGACAACCCCCCGACCCTTCTCAACGCGATCTATGGAGCGACCA
CCGAGAGTATGGAGGCTATGGATGCTTTTCGAGCGGCCCTGCCCCGACAA
CCCCCCGACCCTTCTCAACGCGATCTGCTGCAGCATCGTGCCGCTCTTGC
TGATCCTGTGGAATCAGGCTGCAGCATCGTGCCGCTCTTGCTGATCCTGT
GGAATCAGGTGTTTTTGATTCTAGGGGTGGCTGGCTTCCCGTCAACCTGG
TGGGATGTGCTCACTCTGGATTTGAACTTGGGCGGGCTGCTCCGCGAATC
TTCTCTCGGCCTCATCTCCGTGTTTGGAACCGTCTTGGCGTTCGTGCGAC
CCACAATTCCTGGAGACTGTCCTCGGATACTGCGCATTCTCTTGCCGGTG
GTAGCTTGGTTCTTCTTCTCCGATGAGGCCACGGTGGTGTTTTTGATTCT
AGGGGTGGCTGGCTTCCCGTCAACCTGGTGGGATGTGCTCACTCTGGATT
TGAACTTGGGCGGGCTGCTCCGCGAATCTTCTCTCGGCCTCATCTCCGTG
TTTGGAACCGTCTTGGCGTTCGTGCGACCCACAATTCCTGGAGACTGTCC
TCGGATACTGCGCATTCTCTTGCCGGTGGTAGCTTGGTTCTTCTTCTCCG
ATGAGGCCACGGTGATGACCAGCAACAGCAGTATCCGTGGTAGCCCGGAG
AGCTTTTTCTACGTGAACGGCATCTGCACCACGCGCAGAATGGCGTACAA
AACGGGCAAAGAACTAAGCCAGATGTTCGGCCGACCGGTCACCGTCGTCC
ACAACCCCACCGATTCTGCTTTAATCGACATCTTCGAATGCATATTCGCA
AAGCTGTGGGCCGGGCAAAGCTTTTCGACGAGCAGGCCCGAATCCCTGCT
TTTGGACAAGCTGCTGGAAGTCTTGAGGGACCCCATGAAAACGAAAGTAT
GACCAGCAACAGCAGTATCCGTGGTAGCCCGGAGAGCTTTTTCTACGTGA
ACGGCATCTGCACCACGCGCAGAATGGCGTACAAAACGGGCAAAGAACTA
AGCCAGATGTTCGGCCGACCGGTCACCGTCGTCCACAACCCCACCGATTC
TGCTTTAATCGACATCTTCGAATGCATATTCGCAAAGCTGTGGGCCGGGC
AAAGCTTTTCGACGAGCAGGCCCGAATCCCTGCTTTTGGACAAGCTGCTG
GAAGTCTTGAGGGACCCCATGAAAACGAAAGTGGTGATGTGCTTCGCCGG
CTGCAGAAATATGTCGAAGTCGGCGAGCTGGATCAGGCAAGGAACAATCT
GGCTCACGGCTCACTACGAAGCGTTTTTGTCATTTACCAGGTTCAGTTTT
CCGACGCGTCCGACAGACAAGGATTACCCGATGAGCACGCGTTCATGCAT
GTCAGTTTTGGAGGCGGTCTGTCTCATTCCTCCGGTCGACCCCCTTCACC
TCTCTCTTTACAAGAAACAGGAAGCCATGAAGAAGCTGGAAATGTACAAC
CTGGCCAACGCGTCTCACTGGATGAAGCAGACAGATGGGTTCCCCTACAT
CGAATCTATCTGCAACCAGCGCGACACGGGTGATGTGCTTCGCCGGCTGC
AGAAATATGTCGAAGTCGGCGAGCTGGATCAGGCAAGGAACAATCTGGCT
CACGGCTCACTACGAAGCGTTTTTGTCATTTACCAGGTTCAGTTTTCCGA
CGCGTCCGACAGACAAGGATTACCCGATGAGCACGCGTTCATGCATGTCA
GTTTTGGAGGCGGTCTGTCTCATTCCTCCGGTCGACCCCCTTCACCTCTC
TCTTTACAAGAAACAGGAAGCCATGAAGAAGCTGGAAATGTACAACCTGG
CCAACGCGTCTCACTGGATGAAGCAGACAGATGGGTTCCCCTACATCGAA
TCTATCTGCAACCAGCGCGACACGGTCGGTATGCTGGGCGCTAACGCCCC
CAAGAGCGTAAAGCAGATGTGGAACATCGACATCGCGGGTCCACTCATCT
ACCCGACCACCAGCCGCTGGGGACACATGATCGGTGCCCACTACTTGAAG
CACTTCAAGAACGGGGACTATCCGAGCTCCAAACTTCACGAGTACATGGT
GAACCAGACCATCGCGCCGGAGAGCATTGTCTCTTCCCCTCACTCGTGAG
TCGGTATGCTGGGCGCTAACGCCCCCAAGAGCGTAAAGCAGATGTGGAAC
ATCGACATCGCGGGTCCACTCATCTACCCGACCACCAGCCGCTGGGGACA
CATGATCGGTGCCCACTACTTGAAGCACTTCAAGAACGGGGACTATCCGA
GCTCCAAACTTCACGAGTACATGGTGAACCAGACCATCGCGCCGGAGAGC
ATTGTCTCTTCCCCTCACTCGTGA
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