mRNA_L-elsbetiae_contig2087.6311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: D7FN64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN64_ECTSI) HSP 1 Score: 379 bits (973), Expect = 3.040e-123 Identity = 208/353 (58.92%), Postives = 239/353 (67.71%), Query Frame = 3 Query: 225 PSTWWDVLTLDLNLGGLLRESSLGL---ISVFGTVLAFVRPTIPGDCPRILRILLPVVAWFFFSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQT-DGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTSRWGHMIGAHYLKHFKNGDYPSSKLHEYMVNQTIAPESIVSSPH 1271 P TW DVLTLDL L LL+ES + IS+FGT+LAFVRPTIPGD PR+LR LLP+VAW FSDEATV GSPESFFYVNGICTTRRMA TG ELS+MF + VTVVHNPTDS ++DIFEC+FAKLW GQSF+TSRP +LL+D+LLE LRDP KTKVV+ QGTI +++ + + AV D L+ + MKKLE+YNLANA+HWM QT D PYIESICNQRDTVGMLGANAP+SVKQ WNI IAGP++YPTT+RWGHMI AHYLKH KNGDYP SKLH YM N PE IV++ H Sbjct: 2 PGTWLDVLTLDLGLDDLLKESKSSITSFISMFGTLLAFVRPTIPGDSPRVLRTLLPLVAWVVFSDEATVTPDQLVDDGSPESFFYVNGICTTRRMALATGAELSKMFNKNVTVVHNPTDSFIVDIFECVFAKLWTGQSFATSRPCALLMDRLLEALRDPTKTKVVLIAHS------------QGTI---------------------------IASDALRRLWTAV------DKGELT----HDEMKKLEIYNLANAAHWMDQTEDRVPYIESICNQRDTVGMLGANAPESVKQSWNIRIAGPVVYPTTNRWGHMISAHYLKHLKNGDYPGSKLHTYM-NTAKEPEYIVAASH 304
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A0G4GTY4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GTY4_VITBC) HSP 1 Score: 107 bits (267), Expect = 2.520e-21 Identity = 102/380 (26.84%), Postives = 162/380 (42.63%), Query Frame = 3 Query: 123 DNPPTLLNAICCSIVPLLLILWNQVFLILGVAGFPSTWWDVLTLDLNLGGLLRESSLGLISVFGTVLAFVRPTIPGDCPRILRILLP--VVAWFFFSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQTDGFPY---IESICNQRDTVGMLGANAPK-----SVKQMWNIDIAGPLIYPTTSRWGHMIGAHYLKHFKNGDYPSSKLHEYMVN 1232 DNP TL + I + ++ +LG+ G P TW ++ L G + GL+ VF T++ P +P D P R + F T + R E++ YVNG+ T +A + K L ++FGR +TVVHNPTDS ++D+ EC+ KL + P ++L + +E D KTKVV+ QGTI + +VL+ + H++ +A KKLE+Y A+ +H + + +ES+CN DTV +LG P+ V + + + + GH++ HYL++F N +Y S LH+Y+VN Sbjct: 73 DNPITLGDLISLPV--------GLLYAVLGIIGGPWTWMCMVKTLLEPGVID-----GLVCVFETLV----PAVPCDPPNWCRQYFGDFITRLLFRESSMTKPVPAENDRHPDEAWIYVNGVGTGMPIAVENAKRLVELFGRSITVVHNPTDSFIVDLLECVAGKLKLMWWWKVE-PVGVVL-RTVEQAFDQGKTKVVLIGHS------------QGTIIVN-------------------------------NVLDRIAR------KHINSPPDLKAQKKLEVYLFADCAHHIDTASLEQHSICVESLCNSYDTVALLGGTYPRPETWRDVTEEQRVVNKRVRVVVQDGKGGHLLNTHYLENFAN-EYKGSHLHQYLVN 383
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A261GNK6_9GAMM (Uncharacterized protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GNK6_9GAMM) HSP 1 Score: 98.6 bits (244), Expect = 4.200e-18 Identity = 90/305 (29.51%), Postives = 136/305 (44.59%), Query Frame = 3 Query: 360 RILRILLPVVAWFFF------SDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFST----SRPESLLLDKL------LEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQ------EAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPT-TSRWGHMIGAHYL 1175 R LR +LP V FF + S++S E +F++NG+ T +A+ LS++F RP TV+HN TDS ++D+ EC G++F T S+P+++ + LE L+DP K KVV+ C + QGTI +TA+ L D D + + +++ + L + L KK+ + M ++E+Y AN + M + G PYIE+ NQ D V LG +P I I GPL T S WGH++ HYL Sbjct: 109 RWLRTILPPVVQHFFWRPSNYFQQPDPFASDNSFAN--EQWFFINGVATNEAVAHINSTLLSKLFYRPFTVIHNATDSLVVDLLECA-----VGKTFKTDPNLSKPQTMTEPTIKATIAILEALKDPQKDKVVVI---CHS---------QGTI-ITANVLRALRRALLHIDLLRQDPDSLPALD--LQLIDELALEILLRGDLLQKTKKELDEYLTQIMSRMEVYTFANCADRMTYVAEVKNNKGEKVGLPYIENFANQFDLVARLGVLSPLKESDPSLIKIDGPLFEKTGMSAWGHLLNQHYL 391
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A6FCX3_9GAMM (Uncharacterized protein n=3 Tax=Moritella TaxID=58050 RepID=A6FCX3_9GAMM) HSP 1 Score: 91.7 bits (226), Expect = 7.010e-16 Identity = 90/314 (28.66%), Postives = 134/314 (42.68%), Query Frame = 3 Query: 345 PGDCPRILRILLPVVAWFF-----FSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWA-----GQSFSTSRPESLLLDKLLEVLRDPMKTKVVM-CFAG--------CRNMSKSASWIR------QGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTS--RWGHMIGAHYL 1175 PG R L L PVV F + +A + S +S E + YVNGI T +A + LSQ+F RP+TVVHN TDS ++D+ +C+ K++ S + P +L+ L+DP K +VV+ C + R + KS S I+ + + L ++ L+F F T D +D +S+ MKKLE+Y AN + M + G PYIE+ NQ D V LG +P +++ NI +Y WGH++ HYL Sbjct: 104 PGPWARTL--LPPVVQNLFWRPSNYFQQADPLVSVTSFIN--EQWIYVNGIATNEDVAMMNSELLSQLFKRPLTVVHNQTDSTILDLMQCVTGKVFKTNPNLNDEQSMTEPAVKATVAVLDALKDPTKDRVVLLCHSQGTIITANVLRALQKSVSQIKAVHQAPELKLTLQLNHLERLAFELFWMEAIVTFSD------------------AELDSYLVSM------MKKLEVYTFANCADKMNYVCHSTNNKGELIGLPYIENFANQFDLVARLGVLSP--LREEGNIIEIDGAVYEKQGGHAWGHLLNQHYL 387
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A3T0VVF2_9GAMM (Uncharacterized protein n=3 Tax=Hahella TaxID=158481 RepID=A0A3T0VVF2_9GAMM) HSP 1 Score: 90.1 bits (222), Expect = 2.470e-15 Identity = 88/312 (28.21%), Postives = 131/312 (41.99%), Query Frame = 3 Query: 357 PRILRILLPVVAWFFFSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSF----------STSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPP----VDPLHLSLYKKQEAMKKLEMYNLANASHWMKQ-------------TDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTT-SRWGHMIGAHYLKHFKNGDYPSS 1208 P I R+ +F +D +TS S E +F++NGI T + +A + +SQMF RPVTV+HN T S L+D+F+C G+SF + + P+ LLE +++P +VV+ C + QGTI A + + + + + L L P +D + Y + +KKLE+Y AN ++ M PYIE+ NQ D V LG +P IDI GPL T WGH++ HYL + DY S+ Sbjct: 109 PFINRLFWRPSGYFQQTDPFDSVTSFSH-----ERWFFLNGILTNKPIAELNSQLISQMFQRPVTVIHNQTSSFLLDLFQCA-----VGKSFKIDPDLEIPQAMTEPDVKATIALLEAMKNPALDRVVLL---CHS---------QGTIIAANVLRAISRALKALQKLKDNPECNDWANLEFIDRLALAHLTPDQFGLMDKSGFNAYAIK-LLKKLEVYTFANCANTMTYIAKVNMPIEMGGGVTALPYIENFANQYDLVARLGVISPLREAGSSIIDIDGPLYLRTDIDAWGHLLNQHYL--YAISDYLSA 395
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A090IJT7_9GAMM (Uncharacterized protein n=8 Tax=Moritella TaxID=58050 RepID=A0A090IJT7_9GAMM) HSP 1 Score: 87.8 bits (216), Expect = 1.260e-14 Identity = 90/310 (29.03%), Postives = 132/310 (42.58%), Query Frame = 3 Query: 336 PTIP-GDCPRILRILLPVVAWFF-----FSDEATVMTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWA-----GQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFL--SFTRFSFPTRPTDKDYPMSTRSCMSV------LEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTS-RWGHMIGAHYL 1175 P P G P +L PVV F + +A + S +S E + YVNGI T +A + LS +F RP+TVVHN TDS ++D+ +C+ K++ S + P +LE L+DP K +VV+ C + QGTI +TA+ L S ++ + + + + +EA+ D L L MKKLE+Y AN + M + G PYIE+ NQ D V LG +P I+I G + WGH++ HYL Sbjct: 98 PAFPHGPGPWARTLLPPVVQNVFWRPSHYFQQADPLASVTSFIN--EQWIYVNGIATNEDVAMMNAELLSHLFKRPLTVVHNQTDSMILDLVQCVTGKVFKTNPNLDDEQSMTEPAVKATIAVLEALKDPAKERVVLL---CHS---------QGTI-ITANVLRALQKSISQIKVVHQAPEMQLTLQLNHLERLAFDLFWMEAIFTFTN-DELDSYLVSM---MKKLEVYTFANCADKMNYVCHSTNSCGELIGLPYIENFANQFDLVARLGVLSPLREDGSDIIEIDGAVYEKIGGGAWGHLLNQHYL 388
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: UPI000367A2BF (hypothetical protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI000367A2BF) HSP 1 Score: 84.0 bits (206), Expect = 2.580e-13 Identity = 76/260 (29.23%), Postives = 106/260 (40.77%), Query Frame = 3 Query: 456 ESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWA-----GQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQ----EAMKKLEMYNLANASHWMK----------QTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPT-TSRWGHMIGAHYL 1175 E +F++NG+ T +A LS++F RP+TVVHN TDS ++D+ + K + + + + P +LE L+ P K KVV+ C + QGTI A R P + L L+ D L S Q + KLE+Y AN + M T G PYIE+ NQ D V LG +P I I GPL T + WGH++ HYL Sbjct: 166 EHWFFINGVATNEPVARMNSVLLSKLFNRPLTVVHNETDSLILDLLQAAIGKTFKTDPSLSKYQTMTEPTIKATLAILEALKAPDKDKVVVI---CHS---------QGTIIAANVLRALGKALRHVNQLHKDPGSLPTLDLQFIDELALEVLLRG-DILEKSNTDLQTYLTRLLSKLEVYTFANCADRMTYVAEVKNHHGDTIGLPYIENFANQFDLVARLGVLSPLRESDPSLIKIDGPLFEKTGLAAWGHLLNQHYL 412
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A7S2KLI0_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KLI0_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.830e-12 Identity = 70/260 (26.92%), Postives = 111/260 (42.69%), Query Frame = 3 Query: 456 ESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKD-YPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQTDGFPYIESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYP------TTSRWGHMIGAHYLKHFKNGDYPSSKL 1214 E + + NGI A + K++++MFGRP ++HNPTD ++D+ EC+ K + T P LL + L + ++ K+V+ QGTI ++ + A F R DK+ Y + R + ++ M KLE+Y A A+H+M ++E + N+ D V +LG P +K +W +IY TS WGH HYL + G + SKL Sbjct: 190 ELWIFCNGIMNDVDDAKRACKKITEMFGRPCKLLHNPTDGPILDLLECLMGKTGLFRLGCTG-PRKLLRNILDKEMKKDCYKKIVLVAHS------------QGTI-ISGNVIA-------DFNDRIEDKEKYTVEEREVI----------------------KKNMSKLEVYIFAGAAHYMSGKY-VSHLECLSNRGDVVAVLGHIFPNILKSIWRNTRGNGIIYDHCKDHVETSNWGHSFIPHYLAPMEKGCFSGSKL 405
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A7S1JPN1_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JPN1_9ALVE) HSP 1 Score: 75.5 bits (184), Expect = 7.970e-12 Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 3 Query: 294 GLISVFGTVLAFVRPTIPGDCPRILRILL-PVVAWFFFSDEATV-MTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVM 713 GL+ VF T++ P +P D P R + W F + +T + R E++ YVNG+ T +A + K L ++FGR +TVVHNPTDS ++D+ EC+ KL + P ++L + +E D KTKVV+ Sbjct: 15 GLLCVFETLV----PAVPCDPPNWCRQYFGDFITWLLFREGSTTKLVQAEDDRHPDEAWIYVNGVGTGMPIAVENAKRLVELFGRSITVVHNPTDSFIVDLLECVAGKLKLMWWWKVE-PVGVVL-RTVEQAFDQGKTKVVL 150
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Match: A0A7S1JP67_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JP67_9ALVE) HSP 1 Score: 76.6 bits (187), Expect = 9.690e-12 Identity = 83/319 (26.02%), Postives = 131/319 (41.07%), Query Frame = 3 Query: 294 GLISVFGTVLAFVRPTIPGDCPRILRILL-PVVAWFFFSDEATV-MTSNSSIRGSPESFFYVNGICTTRRMAYKTGKELSQMFGRPVTVVHNPTDSALIDIFECIFAKLWAGQSFSTSRPESLLLDKLLEVLRDPMKTKVVMCFAGCRNMSKSASWIRQGTIWLTAHYEAFLSFTRFSFPTRPTDKDYPMSTRSCMSVLEAVCLIPPVDPLHLSLYKKQEAMKKLEMYNLANASHWMKQTDG-FPYI---ESICNQRDTVGMLGANAPKSVKQMWNIDIAGPLIYPTTSRWGHMIGAHYLKHFKNGDYPSSKLHEYMVN 1232 GL+ VF T++ P +P D P R + W F + +T + R E++ YVNG+ T +A + K L ++FGR +TVVHNPTDS ++D+ EC+ KL + P ++L + +E D KTKVV+ QGTI + +VL+ + P L KK E ++E +L N+ + G +P + Q+ V K V+ + + GH++ HYL +F N +Y S+LH+Y+VN Sbjct: 15 GLLCVFETLV----PAVPCDPPNWCRQYFGDFITWLLFREGSTTKLVQAEDDRHPDEAWIYVNGVGTGMPIAVENAKRLVELFGRSITVVHNPTDSFIVDLLECVAGKLKLMWWWKVE-PVGVVL-RTVEQAFDQGKTKVVLIGHS------------QGTIIVN-------------------------------NVLDRIARKHINSPPDLKAQKKLEHSIRVE--SLCNSYDTVALLGGAYPRPGTWRDVTKQQRVVN-------KRVR-----------VVVQDGKGGHLLNTHYLDNFAN-EYKGSRLHQYLVN 263 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2087.6311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2087.6311.1 >prot_L-elsbetiae_contig2087.6311.1 ID=prot_L-elsbetiae_contig2087.6311.1|Name=mRNA_L-elsbetiae_contig2087.6311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=404bp MERPPRVWRLWMLFERPCPDNPPTLLNAICCSIVPLLLILWNQVFLILGVback to top mRNA from alignment at L-elsbetiae_contig2087:5836..10673+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2087.6311.1 ID=mRNA_L-elsbetiae_contig2087.6311.1|Name=mRNA_L-elsbetiae_contig2087.6311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4838bp|location=Sequence derived from alignment at L-elsbetiae_contig2087:5836..10673+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2087:5836..10673+ >mRNA_L-elsbetiae_contig2087.6311.1 ID=mRNA_L-elsbetiae_contig2087.6311.1|Name=mRNA_L-elsbetiae_contig2087.6311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2424bp|location=Sequence derived from alignment at L-elsbetiae_contig2087:5836..10673+ (Laminarionema elsbetiae ELsaHSoW15)back to top |