mRNA_L-elsbetiae_contig20839.6302.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20839.6302.1
Unique NamemRNA_L-elsbetiae_contig20839.6302.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20839.6302.1 vs. uniprot
Match: D7FVZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-19
Identity = 72/157 (45.86%), Postives = 87/157 (55.41%), Query Frame = 1 
Query:   40 MMHFTSVFVAVLAAVRFAGVISFTGLSVRPSSYRNHVSQSSWCRSGALGSATPADVSNAAA--------AAMMPMPTPRRTRWCSRLGASGETLXXXXXXXXXXXXXXXXXAQSA----GGTGAGVDLSKGIAFEAPKPKALEPEQ-EEESESKKVR 471
            MMH   VF+AVLAA RF+G I FT ++ R SS R+    +S   +  L + +P   S+ +         A M     P   RW SRLGASGETL                   +     GG G+GVDLSKGIAFEAPKPKALEPE+ EEES+SKKVR
Sbjct:    1 MMHPAPVFMAVLAATRFSGSICFTMVTPRSSSSRHVRHMASSATTERLAATSPPSSSSYSTTHTDSSMFAPMEARAVPSLDRWQSRLGASGETLGEEGIANPSEESEATSSGGATNSEPGGGGSGVDLSKGIAFEAPKPKALEPEKAEEESDSKKVR 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20839.6302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVZ2_ECTSI2.500e-1945.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20839contigL-elsbetiae_contig20839:1516..1986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002700.1
Exons1
Model size472
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.3040237-CDS-L-elsbetiae_contig20839:1515..19861622815856.3040237-CDS-L-elsbetiae_contig20839:1515..1986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20839 1516..1986 +
1691683149.0942988-CDS-L-elsbetiae_contig20839:1515..19861691683149.0942988-CDS-L-elsbetiae_contig20839:1515..1986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20839 1516..1986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20839.6302.1prot_L-elsbetiae_contig20839.6302.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20839 1516..1986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20839.6302.1

>prot_L-elsbetiae_contig20839.6302.1 ID=prot_L-elsbetiae_contig20839.6302.1|Name=mRNA_L-elsbetiae_contig20839.6302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
PNLLLLHTLLPTTMMHFTSVFVAVLAAVRFAGVISFTGLSVRPSSYRNHV
SQSSWCRSGALGSATPADVSNAAAAAMMPMPTPRRTRWCSRLGASGETLG
AEGEALSEESDAASVEAQSAGGTGAGVDLSKGIAFEAPKPKALEPEQEEE
SESKKVR
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mRNA from alignment at L-elsbetiae_contig20839:1516..1986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20839.6302.1 ID=mRNA_L-elsbetiae_contig20839.6302.1|Name=mRNA_L-elsbetiae_contig20839.6302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=471bp|location=Sequence derived from alignment at L-elsbetiae_contig20839:1516..1986+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAACTTGCTATTGCTACACACCCTGCTGCCGACCACCATGATGCACTT
CACCTCCGTCTTCGTCGCTGTCCTCGCGGCCGTCCGCTTCGCTGGAGTCA
TTTCCTTTACGGGGCTGTCTGTCCGTCCCTCCTCGTATCGTAATCATGTA
TCACAATCATCGTGGTGTCGCTCCGGGGCATTGGGTTCAGCAACGCCCGC
CGACGTCAGCAACGCAGCAGCAGCTGCAATGATGCCAATGCCGACGCCGC
GCCGTACCCGTTGGTGCTCGCGACTCGGAGCATCCGGGGAGACATTGGGC
GCAGAAGGCGAAGCTTTGTCGGAGGAGTCAGACGCGGCCAGCGTGGAGGC
GCAATCAGCTGGGGGGACGGGGGCGGGGGTGGACTTGTCGAAGGGGATAG
CGTTTGAGGCACCCAAGCCCAAGGCCTTAGAACCGGAGCAAGAGGAGGAA
TCCGAGTCGAAAAAGGTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20839:1516..1986+

>mRNA_L-elsbetiae_contig20839.6302.1 ID=mRNA_L-elsbetiae_contig20839.6302.1|Name=mRNA_L-elsbetiae_contig20839.6302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig20839:1516..1986+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAACTTGCTATTGCTACACACCCTGCTGCCGACCACCATGATGCACTT
CACCTCCGTCTTCGTCGCTGTCCTCGCGGCCGTCCGCTTCGCTGGAGTCA
TTTCCTTTACGGGGCTGTCTGTCCGTCCCTCCTCGTATCGTAATCATGTA
TCACAATCATCGTGGTGTCGCTCCGGGGCATTGGGTTCAGCAACGCCCGC
CGACGTCAGCAACGCAGCAGCAGCTGCAATGATGCCAATGCCGACGCCGC
GCCGTACCCGTTGGTGCTCGCGACTCGGAGCATCCGGGGAGACATTGGGC
GCAGAAGGCGAAGCTTTGTCGGAGGAGTCAGACGCGGCCAGCGTGGAGGC
GCAATCAGCTGGGGGGACGGGGGCGGGGGTGGACTTGTCGAAGGGGATAG
CGTTTGAGGCACCCAAGCCCAAGGCCTTAGAACCGGAGCAAGAGGAGGAA
TCCGAGTCGAAAAAGGTGAGGCCGAACTTGCTATTGCTACACACCCTGCT
GCCGACCACCATGATGCACTTCACCTCCGTCTTCGTCGCTGTCCTCGCGG
CCGTCCGCTTCGCTGGAGTCATTTCCTTTACGGGGCTGTCTGTCCGTCCC
TCCTCGTATCGTAATCATGTATCACAATCATCGTGGTGTCGCTCCGGGGC
ATTGGGTTCAGCAACGCCCGCCGACGTCAGCAACGCAGCAGCAGCTGCAA
TGATGCCAATGCCGACGCCGCGCCGTACCCGTTGGTGCTCGCGACTCGGA
GCATCCGGGGAGACATTGGGCGCAGAAGGCGAAGCTTTGTCGGAGGAGTC
AGACGCGGCCAGCGTGGAGGCGCAATCAGCTGGGGGGACGGGGGCGGGGG
TGGACTTGTCGAAGGGGATAGCGTTTGAGGCACCCAAGCCCAAGGCCTTA
GAACCGGAGCAAGAGGAGGAATCCGAGTCGAAAAAGGTGAGG
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