prot_L-elsbetiae_contig20839.6302.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig20839.6302.1
Unique Name	prot_L-elsbetiae_contig20839.6302.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	157

Homology

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BLAST of mRNA_L-elsbetiae_contig20839.6302.1 vs. uniprot
Match: D7FVZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-19
Identity = 72/157 (45.86%), Postives = 87/157 (55.41%), Query Frame = 0

Query:   14 MMHFTSVFVAVLAAVRFAGVISFTGLSVRPSSYRNHVSQSSWCRSGALGSATPADVSNAAA--------AAMMPMPTPRRTRWCSRLGASGETLXXXXXXXXXXXXXXXXXAQSA----GGTGAGVDLSKGIAFEAPKPKALEPEQ-EEESESKKVR 157
            MMH   VF+AVLAA RF+G I FT ++ R SS R+    +S   +  L + +P   S+ +         A M     P   RW SRLGASGETL                   +     GG G+GVDLSKGIAFEAPKPKALEPE+ EEES+SKKVR
Sbjct:    1 MMHPAPVFMAVLAATRFSGSICFTMVTPRSSSSRHVRHMASSATTERLAATSPPSSSSYSTTHTDSSMFAPMEARAVPSLDRWQSRLGASGETLGEEGIANPSEESEATSSGGATNSEPGGGGSGVDLSKGIAFEAPKPKALEPEKAEEESDSKKVR 157

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig20839.6302.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig20839.6302.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FVZ2_ECTSI	2.500e-19	45.86	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..157
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..41
None	No IPR available	TMHMM	TMhelix		coord: 15..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig20839	contig	L-elsbetiae_contig20839:1516..1986 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig20839.6302.1	mRNA_L-elsbetiae_contig20839.6302.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig20839 1516..1986 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig20839.6302.1 ID=prot_L-elsbetiae_contig20839.6302.1|Name=mRNA_L-elsbetiae_contig20839.6302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
PNLLLLHTLLPTTMMHFTSVFVAVLAAVRFAGVISFTGLSVRPSSYRNHV
SQSSWCRSGALGSATPADVSNAAAAAMMPMPTPRRTRWCSRLGASGETLG
AEGEALSEESDAASVEAQSAGGTGAGVDLSKGIAFEAPKPKALEPEQEEE
SESKKVR