mRNA_L-elsbetiae_contig2076.6267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2076.6267.1
Unique NamemRNA_L-elsbetiae_contig2076.6267.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2076.6267.1 vs. uniprot
Match: D8LGV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.710e-7
Identity = 50/120 (41.67%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:    1 GTTLLAVAKGYGKGARRGSEGGYENGAALEIGFGGXXXXXXXXXXXXXXXRGRATETPGSAFQMFLGGNGGAEVDAGATXXXXXDGGDTG-QSLRVEGSADGPTAPAAPPLPAQQVKTDR 357
            GTTL+AVAKGYGK  RR S+ G++ G+ALE+GFGG               R R  ETP                  G   XXXX GGD   ++    G + G  AP APPL  QQV T+R
Sbjct:  373 GTTLVAVAKGYGKADRRRSDDGHDVGSALEVGFGGGGGVFGGSVGGEGKRRERGPETPXXXXXXXXXXX---XXSGGVDAXXXXHGGDVDTRAGGPMGDSSGGVAPFAPPLTVQQVSTER 489
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BLAST of mRNA_L-elsbetiae_contig2076.6267.1 vs. uniprot
Match: A0A6H5L0M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.100e-7
Identity = 73/147 (49.66%), Postives = 83/147 (56.46%), Query Frame = 1 
Query:    1 GTTLLAVAKGYGKGARRGSEGGYENGAALEI---------------------------GFGGXXXXXXXXXXXXXXXRGRATETPGSAFQMFLGGNGGAE-VDAGATXXXXXDGGDTGQSLRVEGSADGPTAPAAPPLPAQQVKTDR 357
            GTTL+AVAKGYGK  RR S+ G++ G+ALE+                           GFGG XXXXXXXXXXX   R R  ETP SAFQMFLGG+GG+  VDAG  XXXXX   DT     V G + G  AP APP     V T+R
Sbjct:  372 GTTLVAVAKGYGKADRRRSDDGHDVGSALEVANQIVGLQLAHVCGWYPMDLGQEVAQVGFGGGXXXXXXXXXXXGKRRERGPETPLSAFQMFLGGSGGSGGVDAGXXXXXXXV--DTKAGGPV-GDSPGAVAPFAPP---STVSTER 512
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2076.6267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGV8_ECTSI3.710e-741.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0M1_9PHAE5.100e-749.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2076contigL-elsbetiae_contig2076:12156..13778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2076.6267.1prot_L-elsbetiae_contig2076.6267.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2076 12157..13778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.0701914-CDS-L-elsbetiae_contig2076:12156..121801622815853.0701914-CDS-L-elsbetiae_contig2076:12156..12180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 12157..12180 -
1691683146.968844-CDS-L-elsbetiae_contig2076:12156..121801691683146.968844-CDS-L-elsbetiae_contig2076:12156..12180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 12157..12180 -
1622815853.0815794-CDS-L-elsbetiae_contig2076:13281..135241622815853.0815794-CDS-L-elsbetiae_contig2076:13281..13524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 13282..13524 -
1691683146.978263-CDS-L-elsbetiae_contig2076:13281..135241691683146.978263-CDS-L-elsbetiae_contig2076:13281..13524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 13282..13524 -
1622815853.0937338-CDS-L-elsbetiae_contig2076:13688..137781622815853.0937338-CDS-L-elsbetiae_contig2076:13688..13778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 13689..13778 -
1691683146.9897444-CDS-L-elsbetiae_contig2076:13688..137781691683146.9897444-CDS-L-elsbetiae_contig2076:13688..13778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 13689..13778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2076.6267.1

>prot_L-elsbetiae_contig2076.6267.1 ID=prot_L-elsbetiae_contig2076.6267.1|Name=mRNA_L-elsbetiae_contig2076.6267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
GTTLLAVAKGYGKGARRGSEGGYENGAALEIGFGGFGGGGGGGGSGGQNG
RGRATETPGSAFQMFLGGNGGAEVDAGATGTGNGDGGDTGQSLRVEGSAD
GPTAPAAPPLPAQQVKTDR
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mRNA from alignment at L-elsbetiae_contig2076:12156..13778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2076.6267.1 ID=mRNA_L-elsbetiae_contig2076.6267.1|Name=mRNA_L-elsbetiae_contig2076.6267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1623bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:12156..13778- (Laminarionema elsbetiae ELsaHSoW15)
GGCACGACGCTGCTGGCCGTCGCGAAGGGTTACGGGAAAGGAGCTCGGCG
AGGATCAGAGGGTGGCTACGAAAATGGCGCTGCCTTGGAGGTATGTTCAG
TCCAGAACTTCTCGGGCGCTGACACGCTTGTTTCCGGGCGCAACGACACT
CGTGCCTCCATCGCTTCCGTCTGGCCTGGCAAGCTTGCCAGACATAGACT
TCAGACCACGGCTCCCCGTGCTCACCTTGCTTGGCCGATTCTTCGCTATC
ACAGATCGGCTTCGGCGGCTTCGGCGGCGGCGGCGGCGGCGGCGGCAGTG
GTGGGCAAAACGGCCGCGGACGGGCGACTGAAACCCCAGGTTCGGCGTTT
CAAATGTTTCTCGGGGGCAACGGAGGCGCGGAGGTTGATGCCGGTGCGAC
TGGAACAGGCAACGGTGATGGTGGAGACACAGGGCAAAGTTTGCGGGTGG
AGGGCAGCGCCGACGGACCGACGGCACCCGCCGCCCCTCCTTTGCCGGTG
AGGAGCGTCGAGCGGTGCGGGATTTACTTGTCTCTTTGCGTACAGTTTGC
GGTGTGGTGTGTTTCGCCCGAATGGACCTAACACTACTGTCGGCGAGGCG
ATCGACAGTACAGGGTCCTTTGCCGGTGAGGAGCGTCGAGTGGCACGGTC
GGCAGTAAAGGGAGCTTCTCTCGGGGAACGCTAGGAAGCGTCGGCGGATG
ATGAAAACGCACGGCGTAGGTTCAAGCCTGGTCGATCGGTTTTTATCCAG
TGTGGTGGAGCACGTGGAATGAGAGCTTCAAAAGAAGCTGCGGACGGCGG
TCAGTTGCATTTCGCATGCACGCGCGAGTCTCGTATGCTATGCAGTAAGG
ACTCCTGAGAGGACTGCCCCGGCTTCCTTGACGAACCTCCATCATAAAAG
GTTTCACAGTATTCTCGACTAGAGGACACTGTTGCTACTGTCTTTGAGCT
CCCCGAATTACATAAACCTCATTATCTTGCGTTCTGCCAAGGATGTGTTG
TCTCGATCTTCTCGTCGCAGCTATTCCCCCATTACGAGGGAACCATGTCC
CGGAGCCCTCACTTTTAGTGTTGAGCTCCCAGAACCCGGGGAAAGGGTAT
TCTTATCTTGTCGTCCTGAGATGCAACAAGGCGATCCCCTGAGGTTTTCT
TGGCTTCCATACCGGGTGATGCTTCTAACCTTCGCCATTTTGCGCTCCCG
GCGGGGACAAAGACAGGCACGTACAACAATTACCCAGTCACCCCCGTGTA
CCTGAACTAACCCCACACGGGGAGTACTGGCCGTGAACGGGGCGTGCAAG
AACGTCGCTGATTACCTGTCTGTGCGGTCGAGGCAATGTCTCAGTTGATC
TGTCGACGACAAAGTTTTTGCCTATGTATTCCCCATGTGTTTTGGCGTAT
ATACGTATTGTACAATATTAACTTGGGGTTGATGGGAACATCTGGGGATT
TGTTTTTTTAGCCTCTCCGGTCTGGCTGCAGAAAGATCCTCGGTACATGA
GATAAGTGCACGATCGTTGCACCTGGCTGCAGAAATCCTTGGCACCCAAT
CCTCTAACCGACGATACACGATATTTTTGCGGCCTGGTATTTGTTTAGGC
CCAGCAGGTGAAAACGGACAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2076:12156..13778-

>mRNA_L-elsbetiae_contig2076.6267.1 ID=mRNA_L-elsbetiae_contig2076.6267.1|Name=mRNA_L-elsbetiae_contig2076.6267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:12156..13778- (Laminarionema elsbetiae ELsaHSoW15)
GGCACGACGCTGCTGGCCGTCGCGAAGGGTTACGGGAAAGGAGCTCGGCG
AGGATCAGAGGGTGGCTACGAAAATGGCGCTGCCTTGGAGGGCACGACGC
TGCTGGCCGTCGCGAAGGGTTACGGGAAAGGAGCTCGGCGAGGATCAGAG
GGTGGCTACGAAAATGGCGCTGCCTTGGAGATCGGCTTCGGCGGCTTCGG
CGGCGGCGGCGGCGGCGGCGGCAGTGGTGGGCAAAACGGCCGCGGACGGG
CGACTGAAACCCCAGGTTCGGCGTTTCAAATGTTTCTCGGGGGCAACGGA
GGCGCGGAGGTTGATGCCGGTGCGACTGGAACAGGCAACGGTGATGGTGG
AGACACAGGGCAAAGTTTGCGGGTGGAGGGCAGCGCCGACGGACCGACGG
CACCCGCCGCCCCTCCTTTGCCGATCGGCTTCGGCGGCTTCGGCGGCGGC
GGCGGCGGCGGCGGCAGTGGTGGGCAAAACGGCCGCGGACGGGCGACTGA
AACCCCAGGTTCGGCGTTTCAAATGTTTCTCGGGGGCAACGGAGGCGCGG
AGGTTGATGCCGGTGCGACTGGAACAGGCAACGGTGATGGTGGAGACACA
GGGCAAAGTTTGCGGGTGGAGGGCAGCGCCGACGGACCGACGGCACCCGC
CGCCCCTCCTTTGCCGGCCCAGCAGGTGAAAACGGACAGGGCCCAGCAGG
TGAAAACGGACAGG
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