Homology
BLAST of mRNA_L-elsbetiae_contig2076.6267.1 vs. uniprot
Match:
D8LGV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV8_ECTSI)
HSP 1 Score: 57.4 bits (137), Expect = 3.710e-7
Identity = 50/120 (41.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query: 1 GTTLLAVAKGYGKGARRGSEGGYENGAALEIGFGGXXXXXXXXXXXXXXXRGRATETPGSAFQMFLGGNGGAEVDAGATXXXXXDGGDTG-QSLRVEGSADGPTAPAAPPLPAQQVKTDR 357
GTTL+AVAKGYGK RR S+ G++ G+ALE+GFGG R R ETP G XXXX GGD ++ G + G AP APPL QQV T+R
Sbjct: 373 GTTLVAVAKGYGKADRRRSDDGHDVGSALEVGFGGGGGVFGGSVGGEGKRRERGPETPXXXXXXXXXXX---XXSGGVDAXXXXHGGDVDTRAGGPMGDSSGGVAPFAPPLTVQQVSTER 489
BLAST of mRNA_L-elsbetiae_contig2076.6267.1 vs. uniprot
Match:
A0A6H5L0M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M1_9PHAE)
HSP 1 Score: 57.0 bits (136), Expect = 5.100e-7
Identity = 73/147 (49.66%), Postives = 83/147 (56.46%), Query Frame = 1
Query: 1 GTTLLAVAKGYGKGARRGSEGGYENGAALEI---------------------------GFGGXXXXXXXXXXXXXXXRGRATETPGSAFQMFLGGNGGAE-VDAGATXXXXXDGGDTGQSLRVEGSADGPTAPAAPPLPAQQVKTDR 357
GTTL+AVAKGYGK RR S+ G++ G+ALE+ GFGG XXXXXXXXXXX R R ETP SAFQMFLGG+GG+ VDAG XXXXX DT V G + G AP APP V T+R
Sbjct: 372 GTTLVAVAKGYGKADRRRSDDGHDVGSALEVANQIVGLQLAHVCGWYPMDLGQEVAQVGFGGGXXXXXXXXXXXGKRRERGPETPLSAFQMFLGGSGGSGGVDAGXXXXXXXV--DTKAGGPV-GDSPGAVAPFAPP---STVSTER 512
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2076.6267.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.71e-7 / Id = 41.67 Expect = 5.10e-7 / Id = 49.66 Sequence D8LGV8_ECTSI A0A6H5L0M1_9PHAE
Match Name E-value Identity Description
D8LGV8_ECTSI 3.710e-7 41.67 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0M1_9PHAE 5.100e-7 49.66 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 358
Cds size 357
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815853.0701914-CDS-L-elsbetiae_contig2076:12156..12180 1622815853.0701914-CDS-L-elsbetiae_contig2076:12156..12180 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2076 12157..12180 -
1691683146.968844-CDS-L-elsbetiae_contig2076:12156..12180 1691683146.968844-CDS-L-elsbetiae_contig2076:12156..12180 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2076 12157..12180 -
1622815853.0815794-CDS-L-elsbetiae_contig2076:13281..13524 1622815853.0815794-CDS-L-elsbetiae_contig2076:13281..13524 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2076 13282..13524 -
1691683146.978263-CDS-L-elsbetiae_contig2076:13281..13524 1691683146.978263-CDS-L-elsbetiae_contig2076:13281..13524 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2076 13282..13524 -
1622815853.0937338-CDS-L-elsbetiae_contig2076:13688..13778 1622815853.0937338-CDS-L-elsbetiae_contig2076:13688..13778 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2076 13689..13778 -
1691683146.9897444-CDS-L-elsbetiae_contig2076:13688..13778 1691683146.9897444-CDS-L-elsbetiae_contig2076:13688..13778 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2076 13689..13778 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2076.6267.1
>prot_L-elsbetiae_contig2076.6267.1 ID=prot_L-elsbetiae_contig2076.6267.1|Name=mRNA_L-elsbetiae_contig2076.6267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
GTTLLAVAKGYGKGARRGSEGGYENGAALEIGFGGFGGGGGGGGSGGQNG RGRATETPGSAFQMFLGGNGGAEVDAGATGTGNGDGGDTGQSLRVEGSAD GPTAPAAPPLPAQQVKTDR back to top mRNA from alignment at L-elsbetiae_contig2076:12156..13778-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2076.6267.1 ID=mRNA_L-elsbetiae_contig2076.6267.1|Name=mRNA_L-elsbetiae_contig2076.6267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1623bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:12156..13778- (Laminarionema elsbetiae ELsaHSoW15)GGCACGACGCTGCTGGCCGTCGCGAAGGGTTACGGGAAAGGAGCTCGGCG
AGGATCAGAGGGTGGCTACGAAAATGGCGCTGCCTTGGAG GTATGTTCAG
TCCAGAACTTCTCGGGCGCTGACACGCTTGTTTCCGGGCGCAACGACACT
CGTGCCTCCATCGCTTCCGTCTGGCCTGGCAAGCTTGCCAGACATAGACT
TCAGACCACGGCTCCCCGTGCTCACCTTGCTTGGCCGATTCTTCGCTATC
ACAGATCGGCTTCGGCGGCTTCGGCGGCGGCGGCGGCGGCGGCGGCAGTG
GTGGGCAAAACGGCCGCGGACGGGCGACTGAAACCCCAGGTTCGGCGTTT
CAAATGTTTCTCGGGGGCAACGGAGGCGCGGAGGTTGATGCCGGTGCGAC
TGGAACAGGCAACGGTGATGGTGGAGACACAGGGCAAAGTTTGCGGGTGG
AGGGCAGCGCCGACGGACCGACGGCACCCGCCGCCCCTCCTTTGCCG GTG
AGGAGCGTCGAGCGGTGCGGGATTTACTTGTCTCTTTGCGTACAGTTTGC
GGTGTGGTGTGTTTCGCCCGAATGGACCTAACACTACTGTCGGCGAGGCG
ATCGACAGTACAGGGTCCTTTGCCGGTGAGGAGCGTCGAGTGGCACGGTC
GGCAGTAAAGGGAGCTTCTCTCGGGGAACGCTAGGAAGCGTCGGCGGATG
ATGAAAACGCACGGCGTAGGTTCAAGCCTGGTCGATCGGTTTTTATCCAG
TGTGGTGGAGCACGTGGAATGAGAGCTTCAAAAGAAGCTGCGGACGGCGG
TCAGTTGCATTTCGCATGCACGCGCGAGTCTCGTATGCTATGCAGTAAGG
ACTCCTGAGAGGACTGCCCCGGCTTCCTTGACGAACCTCCATCATAAAAG
GTTTCACAGTATTCTCGACTAGAGGACACTGTTGCTACTGTCTTTGAGCT
CCCCGAATTACATAAACCTCATTATCTTGCGTTCTGCCAAGGATGTGTTG
TCTCGATCTTCTCGTCGCAGCTATTCCCCCATTACGAGGGAACCATGTCC
CGGAGCCCTCACTTTTAGTGTTGAGCTCCCAGAACCCGGGGAAAGGGTAT
TCTTATCTTGTCGTCCTGAGATGCAACAAGGCGATCCCCTGAGGTTTTCT
TGGCTTCCATACCGGGTGATGCTTCTAACCTTCGCCATTTTGCGCTCCCG
GCGGGGACAAAGACAGGCACGTACAACAATTACCCAGTCACCCCCGTGTA
CCTGAACTAACCCCACACGGGGAGTACTGGCCGTGAACGGGGCGTGCAAG
AACGTCGCTGATTACCTGTCTGTGCGGTCGAGGCAATGTCTCAGTTGATC
TGTCGACGACAAAGTTTTTGCCTATGTATTCCCCATGTGTTTTGGCGTAT
ATACGTATTGTACAATATTAACTTGGGGTTGATGGGAACATCTGGGGATT
TGTTTTTTTAGCCTCTCCGGTCTGGCTGCAGAAAGATCCTCGGTACATGA
GATAAGTGCACGATCGTTGCACCTGGCTGCAGAAATCCTTGGCACCCAAT
CCTCTAACCGACGATACACGATATTTTTGCGGCCTGGTATTTGTTTAGGC
CCAGCAGGTGAAAACGGACAGG G back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2076:12156..13778-
>mRNA_L-elsbetiae_contig2076.6267.1 ID=mRNA_L-elsbetiae_contig2076.6267.1|Name=mRNA_L-elsbetiae_contig2076.6267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:12156..13778- (Laminarionema elsbetiae ELsaHSoW15) GGCACGACGCTGCTGGCCGTCGCGAAGGGTTACGGGAAAGGAGCTCGGCG AGGATCAGAGGGTGGCTACGAAAATGGCGCTGCCTTGGAGGGCACGACGC TGCTGGCCGTCGCGAAGGGTTACGGGAAAGGAGCTCGGCGAGGATCAGAG GGTGGCTACGAAAATGGCGCTGCCTTGGAGATCGGCTTCGGCGGCTTCGG CGGCGGCGGCGGCGGCGGCGGCAGTGGTGGGCAAAACGGCCGCGGACGGG CGACTGAAACCCCAGGTTCGGCGTTTCAAATGTTTCTCGGGGGCAACGGA GGCGCGGAGGTTGATGCCGGTGCGACTGGAACAGGCAACGGTGATGGTGG AGACACAGGGCAAAGTTTGCGGGTGGAGGGCAGCGCCGACGGACCGACGG CACCCGCCGCCCCTCCTTTGCCGATCGGCTTCGGCGGCTTCGGCGGCGGC GGCGGCGGCGGCGGCAGTGGTGGGCAAAACGGCCGCGGACGGGCGACTGA AACCCCAGGTTCGGCGTTTCAAATGTTTCTCGGGGGCAACGGAGGCGCGG AGGTTGATGCCGGTGCGACTGGAACAGGCAACGGTGATGGTGGAGACACA GGGCAAAGTTTGCGGGTGGAGGGCAGCGCCGACGGACCGACGGCACCCGC CGCCCCTCCTTTGCCGGCCCAGCAGGTGAAAACGGACAGGGCCCAGCAGG TGAAAACGGACAGG back to top