mRNA_L-elsbetiae_contig2076.6266.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2076.6266.1
Unique NamemRNA_L-elsbetiae_contig2076.6266.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2076.6266.1 vs. uniprot
Match: D8LGV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV8_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.870e-14
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 AMAAMALAAMTQELSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEDNRQLEAIVSRLGGQDARKLKAQLFSLLASPSMGRLGDSSTFSPQLTP 297
            AMAAMA+AAMTQEL+V                         XXXXXXXX   NR+LEA+VSRLGGQDAR+LKAQLFSLLASPSMG+LG  +  S QL+P
Sbjct:  516 AMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGQGNP-STQLSP 613
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BLAST of mRNA_L-elsbetiae_contig2076.6266.1 vs. uniprot
Match: A0A6H5L0M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.520e-14
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:  148 EEDNRQLEAIVSRLGGQDARKLKAQLFSLLASPSMGRLGDSSTFSPQLTP 297
            EEDNR+LEA+VSRLGGQDAR+LKAQLFSLLASPSMG+LG+ +  S QL+P
Sbjct:  611 EEDNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNP-STQLSP 659
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2076.6266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGV8_ECTSI1.870e-1458.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0M1_9PHAE6.520e-1478.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2076contigL-elsbetiae_contig2076:10829..12051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001410.1
Exons3
Model size303
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2076.6266.1prot_L-elsbetiae_contig2076.6266.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2076 10829..12048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.183484-CDS-L-elsbetiae_contig2076:10828..109091622815853.183484-CDS-L-elsbetiae_contig2076:10828..10909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 10829..10909 -
1691683147.0197375-CDS-L-elsbetiae_contig2076:10828..109091691683147.0197375-CDS-L-elsbetiae_contig2076:10828..10909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 10829..10909 -
1622815853.1995628-CDS-L-elsbetiae_contig2076:11224..113741622815853.1995628-CDS-L-elsbetiae_contig2076:11224..11374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 11225..11374 -
1691683147.0307379-CDS-L-elsbetiae_contig2076:11224..113741691683147.0307379-CDS-L-elsbetiae_contig2076:11224..11374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 11225..11374 -
1622815853.2173595-CDS-L-elsbetiae_contig2076:11979..120481622815853.2173595-CDS-L-elsbetiae_contig2076:11979..12048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 11980..12048 -
1691683147.043173-CDS-L-elsbetiae_contig2076:11979..120481691683147.043173-CDS-L-elsbetiae_contig2076:11979..12048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 11980..12048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.231678-UTR-L-elsbetiae_contig2076:12048..120511622815853.231678-UTR-L-elsbetiae_contig2076:12048..12051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2076 12049..12051 -
1691683147.0587375-UTR-L-elsbetiae_contig2076:12048..120511691683147.0587375-UTR-L-elsbetiae_contig2076:12048..12051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2076 12049..12051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2076.6266.1

>prot_L-elsbetiae_contig2076.6266.1 ID=prot_L-elsbetiae_contig2076.6266.1|Name=mRNA_L-elsbetiae_contig2076.6266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MAAMALAAMTQELSVMKQSLQAEVTSMKTELKRASDDSRRLTDKLGRLEE
DNRQLEAIVSRLGGQDARKLKAQLFSLLASPSMGRLGDSSTFSPQLTPT*
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mRNA from alignment at L-elsbetiae_contig2076:10829..12051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2076.6266.1 ID=mRNA_L-elsbetiae_contig2076.6266.1|Name=mRNA_L-elsbetiae_contig2076.6266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1223bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:10829..12051- (Laminarionema elsbetiae ELsaHSoW15)
GCGATGGCGGCGATGGCGCTGGCGGCCATGACGCAGGAGCTGAGCGTCAT
GAAACAGTCTCTACAGGCAGAGGTGGGTCGCCCGCGCATGTATGGCGGCC
GAGACTCTCATGATGATTGATTCGCACTCTTTCGTCCTCCAAAGGCTCCT
TGGTCTGCTACATAGCACGCGTTTGGACCCGAGGCTGGGGGCACGACCTT
CGGGTACATAGAGCTGAAACGACAGCACTCGAAGATACGGAGATCAGGGC
TCCCTACTCAGTAGTCAGATTACCACACGATATATGTATCAAGGCACTGT
TGAACCCCTCGGTTACTCGCGTTCCCCCTAGTTCTAGACCGGGTTGAAAA
TGACAACGAGGTACTCTCGAGCTTTTCGGGCAGCCCCTGTAGCGCTGGAA
TAATTGGTAATGGTCGCCACAACAGTAGTGATGAGGAGCCGCAGGACAGA
AACGAAGCGAAATAAAGTAGGTCATCAAATGCCCCCACTCCAGAGACATA
CATACCCACGCGTCTCTGCATGTACTCACTGAGGGGTGTGCTTCTTGGCC
TACGCATTGGTCAGCTGCGGACACTTTATCAGCTTCTCGGGGTTTGGTAA
TCTGCGAAAGGTTATGATGTACCTTGCTGCAATGTACACAGCTTCGAATA
TGTGTACCACTCCTATGTTTGATGCAGGTGACCAGCATGAAGACGGAGCT
GAAGCGCGCGAGCGACGACTCTAGGCGCCTCACTGACAAGCTCGGCCGCC
TCGAGGAAGACAATCGCCAACTCGAGGCAATCGTATCCCGTTTAGGGGGG
CAAGACGCCAGGAAGCTAAAAGCACAGGTAACTGCAGTACATCGCTGATC
GGCATCGACAGCAAGCGAGGTCCAAATAGTCCGACGCACTCGCAGTCGTA
TCCACTTTCTTTATCGTTGCTGGCCATACGAAGGTAAACGTAAGCCTGCC
TCATGAAGTATCTTATAGCCTATTTCTGACGCGCTTCAAAACAAGTACTA
CCTCGCTTTCTGCATTACACGGAGCCTCCAAGCCAAGTCCCTGAAGCCTG
ATCTCACCCTAGCTCCCACAATAACAACCTTCCGCATGATGGCTTCCCCG
AACACCGAATGCTCCTCTTCCTCTTGTTTGCACTCCCGACAGTTATTTTC
TCTGCTGGCTTCGCCTTCCATGGGACGACTTGGAGACAGCAGCACTTTCT
CGCCTCAGTTGACTCCGACCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2076:10829..12051-

>mRNA_L-elsbetiae_contig2076.6266.1 ID=mRNA_L-elsbetiae_contig2076.6266.1|Name=mRNA_L-elsbetiae_contig2076.6266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:10829..12051- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGATGGCGCTGGCGGCCATGACGCAGGAGCTGAGCGTCATGAA
ACAGTCTCTACAGGCAGAGATGGCGGCGATGGCGCTGGCGGCCATGACGC
AGGAGCTGAGCGTCATGAAACAGTCTCTACAGGCAGAGGTGACCAGCATG
AAGACGGAGCTGAAGCGCGCGAGCGACGACTCTAGGCGCCTCACTGACAA
GCTCGGCCGCCTCGAGGAAGACAATCGCCAACTCGAGGCAATCGTATCCC
GTTTAGGGGGGCAAGACGCCAGGAAGCTAAAAGCACAGGTGACCAGCATG
AAGACGGAGCTGAAGCGCGCGAGCGACGACTCTAGGCGCCTCACTGACAA
GCTCGGCCGCCTCGAGGAAGACAATCGCCAACTCGAGGCAATCGTATCCC
GTTTAGGGGGGCAAGACGCCAGGAAGCTAAAAGCACAGTTATTTTCTCTG
CTGGCTTCGCCTTCCATGGGACGACTTGGAGACAGCAGCACTTTCTCGCC
TCAGTTGACTCCGACCTGATTATTTTCTCTGCTGGCTTCGCCTTCCATGG
GACGACTTGGAGACAGCAGCACTTTCTCGCCTCAGTTGACTCCGACCTGA
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