mRNA_L-elsbetiae_contig20740.6255.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20740.6255.1
Unique NamemRNA_L-elsbetiae_contig20740.6255.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.650e-54
Identity = 80/95 (84.21%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 MRERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNLNGASHD 285
            MRERCDMVTYWLPQLESS FN IYFV+VERYEK ARLTI PAPDVTIR+FMAFRG+D YD ELDTA++E+LRAP RKGFVAVEWGGMNLN  SHD
Sbjct:    1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLNRVSHD 95          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.260e-48
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 MRERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNLNGASHD 285
            +RERCDMVT WLPQLESS FN IYFV VERYE+ ARLTIVP PDVTIRVFMAFRG   YDAELDTA++EELR+PAR+GFVAVEWGGMNLNG SHD
Sbjct:  359 VRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSHD 453          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: A0A174QBY5_FLAPL (Uncharacterized protein n=1 Tax=Flavonifractor plautii TaxID=292800 RepID=A0A174QBY5_FLAPL)

HSP 1 Score: 82.0 bits (201), Expect = 7.410e-18
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNL 267
            RE  + + YWLP+LE +P+N + F   E Y  +A LTI PAPD  IRVF+A++G+D   A ++  E ++L AP R GF AVEWGG  +
Sbjct:   60 READEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGLD---APVEV-EPQKLTAPERAGFTAVEWGGAEV 142          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: A0A096CD36_FLAPL (Uncharacterized protein n=14 Tax=Eubacteriales TaxID=186802 RepID=A0A096CD36_FLAPL)

HSP 1 Score: 83.2 bits (204), Expect = 1.170e-17
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNL 267
            RE  + + YWLP+LE +P+N + F   E Y  +A LTI PAPD  IRVF+A++G+D    E+   E + L APAR GF AVEWGG  +
Sbjct:  127 READEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGLDA-PVEI---EPQTLTAPARTGFTAVEWGGAEV 209          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: A0A1Q6RH43_9FIRM (Uncharacterized protein n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1Q6RH43_9FIRM)

HSP 1 Score: 82.4 bits (202), Expect = 2.060e-17
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNL 267
            RE  + + YWLPQ++ +P+N I F S +RY + A+LTI PAPD  +RVFMA++ +D +  E+     + L AP R GF AVEWGG  +
Sbjct:  122 REANEFIVYWLPQMQENPYNLIAFQS-DRYTQAAKLTIDPAPDTLLRVFMAWKPLDKF-MEIPA---QSLTAPERTGFTAVEWGGCRV 204          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: A0A1Y4S5T9_9FIRM (Uncharacterized protein n=2 Tax=unclassified Flavonifractor TaxID=2629267 RepID=A0A1Y4S5T9_9FIRM)

HSP 1 Score: 81.3 bits (199), Expect = 6.440e-17
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEV--EELRAPARKGFVAVEWGGMNL 267
            RE  + + YWLP+LE +P+N I F     Y   A LTI PAPD  IRVFMA+RG++      +  EV  + L APAR GF AVEWGG  +
Sbjct:  128 REANEFIIYWLPRLEENPYNLISF-QTSAYTDGAELTIDPAPDTLIRVFMAWRGLE------EPVEVVPQTLTAPARTGFTAVEWGGAEV 210          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: UPI001F47E5A1 (hypothetical protein n=1 Tax=Pseudoflavonifractor phocaeensis TaxID=1870988 RepID=UPI001F47E5A1)

HSP 1 Score: 80.9 bits (198), Expect = 7.920e-17
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEE--LRAPARKGFVAVEWGGMNL 267
            RE  + + YWLPQLES+P+N I F   E Y   ARL++ PAPD+ +RVFMA++ ++         EVE   L AP R GF  VEWGG  +
Sbjct:  121 REANEFIVYWLPQLESNPYNLISFQG-EAYTSHARLSVTPAPDILLRVFMAWKPLES------PVEVEPQVLTAPERSGFTVVEWGGSKV 203          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: A0A1Y4WJV0_9FIRM (Uncharacterized protein n=1 Tax=Flavonifractor sp. An10 TaxID=1965537 RepID=A0A1Y4WJV0_9FIRM)

HSP 1 Score: 80.9 bits (198), Expect = 8.070e-17
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNL 267
            RE  + + YWLP++E +P+N I F   + Y   A LTI P+PD  IRVFM ++G++    E+     +EL APAR GF AVEWGG  L
Sbjct:  121 REANEFIIYWLPRMEGNPYNLISF-QTDAYTDAAELTIDPSPDTLIRVFMTWKGLE-QPVEIPA---QELTAPARTGFTAVEWGGAEL 203          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: UPI001FD7C1C3 (hypothetical protein n=1 Tax=Flavonifractor sp. AGMB03687 TaxID=2785133 RepID=UPI001FD7C1C3)

HSP 1 Score: 80.9 bits (198), Expect = 8.230e-17
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNL 267
            +E  + + YWLP++E +P+N I F   E Y  +A LTI PAPD  IRVFMA++G+D    +    E + L AP R GF AVEWGG  +
Sbjct:  122 KEANEFIIYWLPKMEHNPYNLISF-QTEAYTDSAALTIDPAPDTLIRVFMAWQGLD----QPVEVEPQTLTAPNRTGFTAVEWGGAEI 204          
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Match: A0A096B0K5_FLAPL (Uncharacterized protein n=19 Tax=Eubacteriales TaxID=186802 RepID=A0A096B0K5_FLAPL)

HSP 1 Score: 80.9 bits (198), Expect = 8.890e-17
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    4 RERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVFMAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNLN 270
            RE  + + YWLP+LE +P+N + F   + Y  +A LTI PAPD  IRVF+A++G+D   A ++  E + L AP R GF AVEWGG  ++
Sbjct:  127 READEFIIYWLPKLEGNPYNLLSF-QTDAYTDSAALTIDPAPDTLIRVFLAWKGLD---APVEV-EPQTLTAPERTGFTAVEWGGAEVD 210          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20740.6255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJP3_ECTSI1.650e-5484.21Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
D7G4B4_ECTSI1.260e-4883.16Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A174QBY5_FLAPL7.410e-1847.73Uncharacterized protein n=1 Tax=Flavonifractor pla... [more]
A0A096CD36_FLAPL1.170e-1748.86Uncharacterized protein n=14 Tax=Eubacteriales Tax... [more]
A0A1Q6RH43_9FIRM2.060e-1746.59Uncharacterized protein n=3 Tax=Oscillospiraceae T... [more]
A0A1Y4S5T9_9FIRM6.440e-1748.89Uncharacterized protein n=2 Tax=unclassified Flavo... [more]
UPI001F47E5A17.920e-1746.67hypothetical protein n=1 Tax=Pseudoflavonifractor ... [more]
A0A1Y4WJV0_9FIRM8.070e-1746.59Uncharacterized protein n=1 Tax=Flavonifractor sp.... [more]
UPI001FD7C1C38.230e-1746.59hypothetical protein n=1 Tax=Flavonifractor sp. AG... [more]
A0A096B0K5_FLAPL8.890e-1746.07Uncharacterized protein n=19 Tax=Eubacteriales Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20740contigL-elsbetiae_contig20740:915..1598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D7G4B4
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Exons2
Model size288
Cds size288
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.3911176-CDS-L-elsbetiae_contig20740:914..10411622815852.3911176-CDS-L-elsbetiae_contig20740:914..1041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20740 915..1041 -
1691683146.5928361-CDS-L-elsbetiae_contig20740:914..10411691683146.5928361-CDS-L-elsbetiae_contig20740:914..1041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20740 915..1041 -
1622815852.4037197-CDS-L-elsbetiae_contig20740:1437..15981622815852.4037197-CDS-L-elsbetiae_contig20740:1437..1598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20740 1438..1598 -
1691683146.6067631-CDS-L-elsbetiae_contig20740:1437..15981691683146.6067631-CDS-L-elsbetiae_contig20740:1437..1598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20740 1438..1598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20740.6255.1prot_L-elsbetiae_contig20740.6255.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20740 915..1598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20740.6255.1

>prot_L-elsbetiae_contig20740.6255.1 ID=prot_L-elsbetiae_contig20740.6255.1|Name=mRNA_L-elsbetiae_contig20740.6255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MRERCDMVTYWLPQLESSPFNAIYFVSVERYEKTARLTIVPAPDVTIRVF
MAFRGVDGYDAELDTAEVEELRAPARKGFVAVEWGGMNLNGASHD*
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mRNA from alignment at L-elsbetiae_contig20740:915..1598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20740.6255.1 ID=mRNA_L-elsbetiae_contig20740.6255.1|Name=mRNA_L-elsbetiae_contig20740.6255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig20740:915..1598- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGAGCGCTGCGACATGGTCACGTACTGGCTGCCGCAGCTGGAATC TTCGCCCTTCAACGCCATCTACTTCGTGAGCGTAGAGCGGTACGAGAAGA CGGCCCGTCTGACCATTGTGCCTGCTCCGGACGTCACGATCCGGGTGTTC ATGGCCTTCAGGTGGGTGGGTCATGAGTACTTGCGCGTGTGTGAGAGTTT ACCTGTAGATTTCGTTGTTGAATCCTGTTGTGCTCGAAGGCGACGATCCG TCTCTTTGCCGTTGAGTGACTCATCGTTGCTTGCATGAGGTATCAATAAT GCAGAAGACGCCGCCCCTGAAATGGTACCATACTGACAAGATCAGTAGCC CCGCCCGACTTGGCCACGCCCCGTGTTGAAACGCTATATCCCGGTGTATG CCCCAGTGTATGCCCCAACACCCTAAGCATTGAACTTATCTTCCGCTCCA TACGTGTAGGTCACACGCCACCGTCGAACATTCTTCGAAGCATCGTATAA CCATCACATCATTGCATTTCTCGTTGACGTACGTCGTGTACCACGTTGTG TTGGCAGGGGCGTCGATGGATATGACGCGGAGCTGGACACTGCCGAGGTA GAAGAGCTACGAGCGCCTGCCAGGAAGGGATTCGTTGCTGTCGAGTGGGG AGGCATGAACCTCAACGGTGCCTCGCACGACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20740:915..1598-

>mRNA_L-elsbetiae_contig20740.6255.1 ID=mRNA_L-elsbetiae_contig20740.6255.1|Name=mRNA_L-elsbetiae_contig20740.6255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig20740:915..1598- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGAGCGCTGCGACATGGTCACGTACTGGCTGCCGCAGCTGGAATC
TTCGCCCTTCAACGCCATCTACTTCGTGAGCGTAGAGCGGTACGAGAAGA
CGGCCCGTCTGACCATTGTGCCTGCTCCGGACGTCACGATCCGGGTGTTC
ATGGCCTTCAGATGCGGGAGCGCTGCGACATGGTCACGTACTGGCTGCCG
CAGCTGGAATCTTCGCCCTTCAACGCCATCTACTTCGTGAGCGTAGAGCG
GTACGAGAAGACGGCCCGTCTGACCATTGTGCCTGCTCCGGACGTCACGA
TCCGGGTGTTCATGGCCTTCAGGGGCGTCGATGGATATGACGCGGAGCTG
GACACTGCCGAGGTAGAAGAGCTACGAGCGCCTGCCAGGAAGGGATTCGT
TGCTGTCGAGTGGGGAGGCATGAACCTCAACGGTGCCTCGCACGACTAGG
GGCGTCGATGGATATGACGCGGAGCTGGACACTGCCGAGGTAGAAGAGCT
ACGAGCGCCTGCCAGGAAGGGATTCGTTGCTGTCGAGTGGGGAGGCATGA
ACCTCAACGGTGCCTCGCACGACTAG
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