mRNA_L-elsbetiae_contig20732.6252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20732.6252.1
Unique NamemRNA_L-elsbetiae_contig20732.6252.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20732.6252.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.530e-16
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:   61 IDLIFEVLRADQWAELLRAPLERAAAKGNRDLAQRLAGAGAKSGDALHDAARHGHGEIVSDLLGSGVSLAAKNAYGFTP 297
            +D IFE+L + Q AELLRA LE AAAKGN+DLAQRL  AGA+ GDALH A   GH EIVSDLL S  SLAA +  G TP
Sbjct:    2 VDFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDGRTP 80
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BLAST of mRNA_L-elsbetiae_contig20732.6252.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-5
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   58 TIDLIFEVLRADQWAELLRAPLERAAAKGNRDLAQRLAGAGAKSGDA---------LHDAARHGHGEIVSDL--LGSGVSLAAK 276
            T  L+ +    DQWAE LRAPLE AAA GNRDL  +L GAGA  G           LH AA  G+ ++++ L   G+G  + AK
Sbjct:   60 TFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAK 143
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20732.6252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE1.530e-1665.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ7_ECTSI1.110e-544.05F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20732contigL-elsbetiae_contig20732:11..890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog2880.D8LL12
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size880
Cds size675
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.1853366-UTR-L-elsbetiae_contig20732:10..2151622815852.1853366-UTR-L-elsbetiae_contig20732:10..215Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20732 11..215 -
1691683146.4761198-UTR-L-elsbetiae_contig20732:10..2151691683146.4761198-UTR-L-elsbetiae_contig20732:10..215Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20732 11..215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.1961002-CDS-L-elsbetiae_contig20732:215..8901622815852.1961002-CDS-L-elsbetiae_contig20732:215..890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20732 216..890 -
1691683146.4874566-CDS-L-elsbetiae_contig20732:215..8901691683146.4874566-CDS-L-elsbetiae_contig20732:215..890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20732 216..890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20732.6252.1prot_L-elsbetiae_contig20732.6252.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20732 216..890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20732.6252.1

>prot_L-elsbetiae_contig20732.6252.1 ID=prot_L-elsbetiae_contig20732.6252.1|Name=mRNA_L-elsbetiae_contig20732.6252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MDTVGNSNGREALRGAEVPTIDLIFEVLRADQWAELLRAPLERAAAKGNR
DLAQRLAGAGAKSGDALHDAARHGHGEIVSDLLGSGVSLAAKNAYGFTPL
HVAAWRGETKIVQLLLLKGADKDAIDGDELTPLCLAAHQGHVAAALALLA
AGADVSLQCGEIKQQVMTVAAEKGHVDILRAVIEHGADVHAVTRHSSPCS
RGEEPRRGHRCARRGWGQHRSTGL*
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mRNA from alignment at L-elsbetiae_contig20732:11..890-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20732.6252.1 ID=mRNA_L-elsbetiae_contig20732.6252.1|Name=mRNA_L-elsbetiae_contig20732.6252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=880bp|location=Sequence derived from alignment at L-elsbetiae_contig20732:11..890- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACACCGTGGGGAACAGCAACGGGCGAGAGGCACTCCGAGGAGCAGA
GGTGCCCACGATAGATCTCATATTCGAAGTCCTCAGAGCAGATCAGTGGG
CGGAGCTGCTGAGAGCCCCACTAGAGCGTGCCGCCGCCAAGGGCAACAGA
GATCTCGCACAAAGGCTGGCTGGAGCAGGAGCAAAGAGTGGGGATGCACT
GCATGACGCCGCTCGACACGGGCACGGAGAGATCGTGAGCGACCTGCTGG
GGAGTGGGGTATCGCTCGCCGCCAAGAATGCGTATGGCTTCACTCCTCTC
CACGTTGCTGCCTGGCGCGGGGAAACGAAAATAGTGCAACTGTTGTTGCT
GAAGGGGGCTGACAAAGACGCGATTGACGGCGACGAACTGACACCGCTGT
GTCTGGCAGCCCATCAGGGTCACGTGGCTGCCGCACTAGCTCTATTGGCT
GCCGGCGCGGACGTCAGCCTCCAATGCGGCGAGATCAAGCAACAAGTGAT
GACCGTGGCCGCTGAGAAGGGGCACGTCGATATCTTGAGGGCTGTGATCG
AGCACGGGGCGGACGTGCACGCTGTCACCAGGCACAGCTCTCCATGCAGC
CGCGGTGAAGAACCACGCCGAGGCCATCGATGTGCTCGTCGAGGCTGGGG
CCAACATCGAAGCACGGGATTGTGACGGCTGCACACCTCTCCACCTTGCT
TCCGTCCTGCTCTGTCGCGAAGCCTTGCTTAGCCTCCTGAAGCACGGTGC
GAACGTCAACGCCGAGAGCAATTCCCTAGAAACACCGTTGATGTGTGCTG
TAGCTGAAGCCGGGAAAGGAGGAGCTGCGGGGGTGGTGGACTCTCTGCTG
AGGGCGGGCGCGGATGAGACAATCGTCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20732:11..890-

>mRNA_L-elsbetiae_contig20732.6252.1 ID=mRNA_L-elsbetiae_contig20732.6252.1|Name=mRNA_L-elsbetiae_contig20732.6252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig20732:11..890- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACACCGTGGGGAACAGCAACGGGCGAGAGGCACTCCGAGGAGCAGA
GGTGCCCACGATAGATCTCATATTCGAAGTCCTCAGAGCAGATCAGTGGG
CGGAGCTGCTGAGAGCCCCACTAGAGCGTGCCGCCGCCAAGGGCAACAGA
GATCTCGCACAAAGGCTGGCTGGAGCAGGAGCAAAGAGTGGGGATGCACT
GCATGACGCCGCTCGACACGGGCACGGAGAGATCGTGAGCGACCTGCTGG
GGAGTGGGGTATCGCTCGCCGCCAAGAATGCGTATGGCTTCACTCCTCTC
CACGTTGCTGCCTGGCGCGGGGAAACGAAAATAGTGCAACTGTTGTTGCT
GAAGGGGGCTGACAAAGACGCGATTGACGGCGACGAACTGACACCGCTGT
GTCTGGCAGCCCATCAGGGTCACGTGGCTGCCGCACTAGCTCTATTGGCT
GCCGGCGCGGACGTCAGCCTCCAATGCGGCGAGATCAAGCAACAAGTGAT
GACCGTGGCCGCTGAGAAGGGGCACGTCGATATCTTGAGGGCTGTGATCG
AGCACGGGGCGGACGTGCACGCTGTCACCAGGCACAGCTCTCCATGCAGC
CGCGGTGAAGAACCACGCCGAGGCCATCGATGTGCTCGTCGAGGCTGGGG
CCAACATCGAAGCACGGGATTGTGAATGGACACCGTGGGGAACAGCAACG
GGCGAGAGGCACTCCGAGGAGCAGAGGTGCCCACGATAGATCTCATATTC
GAAGTCCTCAGAGCAGATCAGTGGGCGGAGCTGCTGAGAGCCCCACTAGA
GCGTGCCGCCGCCAAGGGCAACAGAGATCTCGCACAAAGGCTGGCTGGAG
CAGGAGCAAAGAGTGGGGATGCACTGCATGACGCCGCTCGACACGGGCAC
GGAGAGATCGTGAGCGACCTGCTGGGGAGTGGGGTATCGCTCGCCGCCAA
GAATGCGTATGGCTTCACTCCTCTCCACGTTGCTGCCTGGCGCGGGGAAA
CGAAAATAGTGCAACTGTTGTTGCTGAAGGGGGCTGACAAAGACGCGATT
GACGGCGACGAACTGACACCGCTGTGTCTGGCAGCCCATCAGGGTCACGT
GGCTGCCGCACTAGCTCTATTGGCTGCCGGCGCGGACGTCAGCCTCCAAT
GCGGCGAGATCAAGCAACAAGTGATGACCGTGGCCGCTGAGAAGGGGCAC
GTCGATATCTTGAGGGCTGTGATCGAGCACGGGGCGGACGTGCACGCTGT
CACCAGGCACAGCTCTCCATGCAGCCGCGGTGAAGAACCACGCCGAGGCC
ATCGATGTGCTCGTCGAGGCTGGGGCCAACATCGAAGCACGGGATTGTGA
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