Homology
BLAST of mRNA_L-elsbetiae_contig20732.6252.1 vs. uniprot
Match:
A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)
HSP 1 Score: 89.4 bits (220), Expect = 1.530e-16
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 61 IDLIFEVLRADQWAELLRAPLERAAAKGNRDLAQRLAGAGAKSGDALHDAARHGHGEIVSDLLGSGVSLAAKNAYGFTP 297
+D IFE+L + Q AELLRA LE AAAKGN+DLAQRL AGA+ GDALH A GH EIVSDLL S SLAA + G TP
Sbjct: 2 VDFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDGRTP 80
BLAST of mRNA_L-elsbetiae_contig20732.6252.1 vs. uniprot
Match:
D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)
HSP 1 Score: 57.0 bits (136), Expect = 1.110e-5
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 1
Query: 58 TIDLIFEVLRADQWAELLRAPLERAAAKGNRDLAQRLAGAGAKSGDA---------LHDAARHGHGEIVSDL--LGSGVSLAAK 276
T L+ + DQWAE LRAPLE AAA GNRDL +L GAGA G LH AA G+ ++++ L G+G + AK
Sbjct: 60 TFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAK 143
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20732.6252.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.53e-16 / Id = 65.82 Expect = 1.11e-5 / Id = 44.05 Sequence A0A6H5KXK5_9PHAE D8LHQ7_ECTSI
Match Name E-value Identity Description
A0A6H5KXK5_9PHAE 1.530e-16 65.82 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ7_ECTSI 1.110e-5 44.05 F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 89.0
Seed ortholog evalue 3.1e-15
Seed eggNOG ortholog 2880.D8LL12
KEGG ko ko:K21440
Hectar predicted targeting category other localisation
EggNOG free text desc. response to abiotic stimulus
EggNOG OGs COG0666@1,KOG4177@2759
COG Functional cat. G
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko04131
Exons 1
Model size 880
Cds size 675
Stop 1
Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815852.1853366-UTR-L-elsbetiae_contig20732:10..215 1622815852.1853366-UTR-L-elsbetiae_contig20732:10..215 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig20732 11..215 -
1691683146.4761198-UTR-L-elsbetiae_contig20732:10..215 1691683146.4761198-UTR-L-elsbetiae_contig20732:10..215 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig20732 11..215 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815852.1961002-CDS-L-elsbetiae_contig20732:215..890 1622815852.1961002-CDS-L-elsbetiae_contig20732:215..890 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig20732 216..890 -
1691683146.4874566-CDS-L-elsbetiae_contig20732:215..890 1691683146.4874566-CDS-L-elsbetiae_contig20732:215..890 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig20732 216..890 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig20732.6252.1
>prot_L-elsbetiae_contig20732.6252.1 ID=prot_L-elsbetiae_contig20732.6252.1|Name=mRNA_L-elsbetiae_contig20732.6252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MDTVGNSNGREALRGAEVPTIDLIFEVLRADQWAELLRAPLERAAAKGNR DLAQRLAGAGAKSGDALHDAARHGHGEIVSDLLGSGVSLAAKNAYGFTPL HVAAWRGETKIVQLLLLKGADKDAIDGDELTPLCLAAHQGHVAAALALLA AGADVSLQCGEIKQQVMTVAAEKGHVDILRAVIEHGADVHAVTRHSSPCS RGEEPRRGHRCARRGWGQHRSTGL* back to top mRNA from alignment at L-elsbetiae_contig20732:11..890-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20732.6252.1 ID=mRNA_L-elsbetiae_contig20732.6252.1|Name=mRNA_L-elsbetiae_contig20732.6252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=880bp|location=Sequence derived from alignment at L-elsbetiae_contig20732:11..890- (Laminarionema elsbetiae ELsaHSoW15)ATGGACACCGTGGGGAACAGCAACGGGCGAGAGGCACTCCGAGGAGCAGA
GGTGCCCACGATAGATCTCATATTCGAAGTCCTCAGAGCAGATCAGTGGG
CGGAGCTGCTGAGAGCCCCACTAGAGCGTGCCGCCGCCAAGGGCAACAGA
GATCTCGCACAAAGGCTGGCTGGAGCAGGAGCAAAGAGTGGGGATGCACT
GCATGACGCCGCTCGACACGGGCACGGAGAGATCGTGAGCGACCTGCTGG
GGAGTGGGGTATCGCTCGCCGCCAAGAATGCGTATGGCTTCACTCCTCTC
CACGTTGCTGCCTGGCGCGGGGAAACGAAAATAGTGCAACTGTTGTTGCT
GAAGGGGGCTGACAAAGACGCGATTGACGGCGACGAACTGACACCGCTGT
GTCTGGCAGCCCATCAGGGTCACGTGGCTGCCGCACTAGCTCTATTGGCT
GCCGGCGCGGACGTCAGCCTCCAATGCGGCGAGATCAAGCAACAAGTGAT
GACCGTGGCCGCTGAGAAGGGGCACGTCGATATCTTGAGGGCTGTGATCG
AGCACGGGGCGGACGTGCACGCTGTCACCAGGCACAGCTCTCCATGCAGC
CGCGGTGAAGAACCACGCCGAGGCCATCGATGTGCTCGTCGAGGCTGGGG
CCAACATCGAAGCACGGGATTGTGA CGGCTGCACACCTCTCCACCTTGCT
TCCGTCCTGCTCTGTCGCGAAGCCTTGCTTAGCCTCCTGAAGCACGGTGC
GAACGTCAACGCCGAGAGCAATTCCCTAGAAACACCGTTGATGTGTGCTG
TAGCTGAAGCCGGGAAAGGAGGAGCTGCGGGGGTGGTGGACTCTCTGCTG
AGGGCGGGCGCGGATGAGACAATCGTCAAC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig20732:11..890-
>mRNA_L-elsbetiae_contig20732.6252.1 ID=mRNA_L-elsbetiae_contig20732.6252.1|Name=mRNA_L-elsbetiae_contig20732.6252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig20732:11..890- (Laminarionema elsbetiae ELsaHSoW15) ATGGACACCGTGGGGAACAGCAACGGGCGAGAGGCACTCCGAGGAGCAGA GGTGCCCACGATAGATCTCATATTCGAAGTCCTCAGAGCAGATCAGTGGG CGGAGCTGCTGAGAGCCCCACTAGAGCGTGCCGCCGCCAAGGGCAACAGA GATCTCGCACAAAGGCTGGCTGGAGCAGGAGCAAAGAGTGGGGATGCACT GCATGACGCCGCTCGACACGGGCACGGAGAGATCGTGAGCGACCTGCTGG GGAGTGGGGTATCGCTCGCCGCCAAGAATGCGTATGGCTTCACTCCTCTC CACGTTGCTGCCTGGCGCGGGGAAACGAAAATAGTGCAACTGTTGTTGCT GAAGGGGGCTGACAAAGACGCGATTGACGGCGACGAACTGACACCGCTGT GTCTGGCAGCCCATCAGGGTCACGTGGCTGCCGCACTAGCTCTATTGGCT GCCGGCGCGGACGTCAGCCTCCAATGCGGCGAGATCAAGCAACAAGTGAT GACCGTGGCCGCTGAGAAGGGGCACGTCGATATCTTGAGGGCTGTGATCG AGCACGGGGCGGACGTGCACGCTGTCACCAGGCACAGCTCTCCATGCAGC CGCGGTGAAGAACCACGCCGAGGCCATCGATGTGCTCGTCGAGGCTGGGG CCAACATCGAAGCACGGGATTGTGAATGGACACCGTGGGGAACAGCAACG GGCGAGAGGCACTCCGAGGAGCAGAGGTGCCCACGATAGATCTCATATTC GAAGTCCTCAGAGCAGATCAGTGGGCGGAGCTGCTGAGAGCCCCACTAGA GCGTGCCGCCGCCAAGGGCAACAGAGATCTCGCACAAAGGCTGGCTGGAG CAGGAGCAAAGAGTGGGGATGCACTGCATGACGCCGCTCGACACGGGCAC GGAGAGATCGTGAGCGACCTGCTGGGGAGTGGGGTATCGCTCGCCGCCAA GAATGCGTATGGCTTCACTCCTCTCCACGTTGCTGCCTGGCGCGGGGAAA CGAAAATAGTGCAACTGTTGTTGCTGAAGGGGGCTGACAAAGACGCGATT GACGGCGACGAACTGACACCGCTGTGTCTGGCAGCCCATCAGGGTCACGT GGCTGCCGCACTAGCTCTATTGGCTGCCGGCGCGGACGTCAGCCTCCAAT GCGGCGAGATCAAGCAACAAGTGATGACCGTGGCCGCTGAGAAGGGGCAC GTCGATATCTTGAGGGCTGTGATCGAGCACGGGGCGGACGTGCACGCTGT CACCAGGCACAGCTCTCCATGCAGCCGCGGTGAAGAACCACGCCGAGGCC ATCGATGTGCTCGTCGAGGCTGGGGCCAACATCGAAGCACGGGATTGTGA back to top