mRNA_L-elsbetiae_contig205.6175.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig205.6175.1
Unique NamemRNA_L-elsbetiae_contig205.6175.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE)

HSP 1 Score: 494 bits (1272), Expect = 1.610e-172
Identity = 255/355 (71.83%), Postives = 274/355 (77.18%), Query Frame = 1
Query:  106 ILGYVVITPMVA---KGFGVHMMAKGFGNQSDRKQKPLSSNVIIQPP-PLTPEQPNTRVGAQGGGLPEDDFSQFXXXXXXXXXXXXXXXXXKG--MPPEVLDRIRERHGFERFDDKLFPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLKQSGRRKGGLEPTELQSATTSSQFQQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLGPLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYISRFVGAG 1152
            +L  V +TP VA          M +GFG QS R   P       + P P  P+Q   R G     LPED FSQF                 K    P EV DRIRERHGFE FD+KLFPGIRLLHADPVVFEV+ FFTPQEC+AY+AMSTLK+SGRRKGGL PTELQSATTSSQ QQ  TSTTWFH YASAPEL+AKASLLLGVDD+ KWEEPQTVRYRPGERFNWHLDALPPSECGAS+GGQRTATVLVYLT+M A  GGATAFRDLGPLRVRPKKGKCL+FFPSFGGEAG+PFDSRVLHAGEVVG+G+KAKEKYIAQ WCHKKPYPPSVPEGSSHEAAE+PI DY  RF  AG
Sbjct:    6 LLACVALTPGVAFNPNNQARLRMQQGFGKQS-RSNTPAKLKTPAKAPYPAVPKQTPVRAGE----LPEDAFSQFPPLTPEQKQTLQKAPAGKATAFPVEVADRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQCQQXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYARRFAEAG 355          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.810e-74
Identity = 130/252 (51.59%), Postives = 165/252 (65.48%), Query Frame = 1
Query:  436 LFPGIRLLHADPVVFEVDNFFTPQECNAYVAMST------------LKQSGRRKGGLEPTELQSATTSSQFQQ--QRTSTTWFHAYASAPELIAKASLLLGVD-DHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLGPLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYISRFVG 1146
            LFPG+RLLHA+P V  V +FFT +EC+ Y++ S                      G  P   +SAT  +      QRTSTTWFH +++ PEL+AKAS L+GV  +  +WEE QTVRYRPGE+F WHLDALPP+   ASRGGQR AT+LVYLT+M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD R LHAGEVV  G++ ++K+IAQ W  +  Y P+VP+ + HE A   +A++   + G
Sbjct:  100 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEFDKIWQG 350          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 7.300e-71
Identity = 148/383 (38.64%), Postives = 195/383 (50.91%), Query Frame = 1
Query:  235 PPLTPEQPNTRVGAQ-----GGGLPEDDFSQFXXXXXXXXXXXXXXXXXKGMPPEVLDRIRERHGFERF-------------------------------------------------------DDKLFPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLKQSGRRKGGLE----------------PTELQSATTSSQFQQ--QRTSTTWFHAYASAPELIAKASLLLGVD-DHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLGPLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYISRFVG 1146
            PPL+P+   + +G        GG+P  +  Q                  + +PP+VL+ IR RHG E F                                                          LFPG+RLLHA+P V  V +FFT +EC+ Y++ S                             P   +SAT  +      QRTSTTWFH +++ PEL+AKAS L+GV  +  +WEE QTVRYRPGE+F WHLDALPP+   AS+GGQR AT+LVYLT+M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD R LHAGEVV  G++ ++K+IAQ W  ++ Y P+VP+ + HE A   +A++   + G
Sbjct:  212 PPLSPDTLKSIMGVDVFDLPAGGIPASERGQ-----------------QEALPPQVLECIRGRHGLEEFAGGRRLLDPEYFGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXGGDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEFDKIWQG 576          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.490e-70
Identity = 121/236 (51.27%), Postives = 156/236 (66.10%), Query Frame = 1
Query:  439 FPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLKQSGRRKGGLEPTELQSATTSSQFQQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLGP-----LRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYI 1131
            F   R+LH DP+V  VD+FFT +EC+ Y+AMS    +G + G    T   +    +  + QRTSTTWFH Y + PEL+AK+S L G+DD   +EEPQTVRY+P ++F WHLDAL P     S+GGQRTAT+LVYLTD+    GGAT FRDLGP     L+V+PKKG  L+FFP+ GG    PFD R LHAGEVV    K+ +K+IAQ W  +  Y P+VP  + H AA +PI+ Y+
Sbjct:  202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIAMSD-PTAGNKDGDAVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVVSADCKS-DKWIAQLWLREDSYEPTVPPENVHAAATEPISQYV 435          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 233 bits (595), Expect = 9.290e-69
Identity = 125/247 (50.61%), Postives = 160/247 (64.78%), Query Frame = 1
Query:  433 KLFPGIRLLHADPVVFEVDNFFTPQECNAYVAMST---LKQSGRRKGG--LEPTELQSATT---SSQFQQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLG-----PLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYIS 1134
            K F   R+LH DP+V  VD+FFTP+EC+A +A ST   +      K G  L P ++  + T    S+ + QRTSTTWFH YA  PEL+AKA  L+G++D   +EEPQTVRYR  E F WHLDAL P+   A +GGQR AT+LVYLTD+    GGAT FRDLG     PL+VRPKKG  L+FFP+ GG    P D R LH GE V   ++ ++K+IAQ W  + PY P+ P G+SH +A  PI+DY +
Sbjct:  233 KPFSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVASDAE-QDKWIAQLWLRETPYTPTAPPGNSHASASSPISDYCA 478          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 225 bits (574), Expect = 1.020e-65
Identity = 121/239 (50.63%), Postives = 155/239 (64.85%), Query Frame = 1
Query:  439 FPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLKQSGRRK--GGLEPTELQSATT---SSQFQQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECG-ASRGGQRTATVLVYLTDMDATAGGATAFRDLG---PLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADY 1128
            F   R+LH DP+V  VD+FFT +EC+ YV MS   ++ + +  G L+P  L  + T    S+ + QRTSTTWFH YA  PEL+A+A+ LLG+    ++EEPQTVRYR  E+F WHLDAL P     +S  GQR +T+LVYLTD+ +  GGAT FRDLG   PL+VRPKKG  L+FFPS GG    PFD R LH GE VG+ +   EK+IAQ W  ++ Y P+ P GS H  A   I +Y
Sbjct:  229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGEDAP-NEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEY 466          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A7S2KB24_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB24_9STRA)

HSP 1 Score: 224 bits (571), Expect = 2.170e-65
Identity = 125/260 (48.08%), Postives = 159/260 (61.15%), Query Frame = 1
Query:  439 FPGIRLLHADPVVFEVDNFFTPQECNAYVAMST---LKQSGRRKGGLEPTELQSATT------------SSQFQQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRG-GQRTATVLVYLTDMDATAGGATAFRDLG---------PLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYISRFV 1143
            F   R+LH DP+V  +D+FFT +EC+ YV +S     +Q+     G E T+ ++A               S+ + QRTSTTWFH Y   PEL+AKAS LLG++   ++EEPQTVRYR  E+F WHLDAL P E     G GQR AT+LVYLTD+ A +GGAT FRDLG         PL+VRPKKG  L+FFPS GG  GAPFD R LH GE V + ++  EK+IAQ W  ++ Y P+ P G+SH  A   I  Y +  V
Sbjct:  204 FEKFRVLHTDPMVLAIDDFFTNEECDKYVQISIDAEKQQTNSAAAGDETTQEETALQPMLLGQSQTVGKDSRSKAQRTSTTWFHYYKGVPELMAKASRLLGLEGIDRFEEPQTVRYRRNEKFTWHLDALSPEEANNPSGSGQRIATLLVYLTDVPAGSGGATMFRDLGGNNGAEDSQPLKVRPKKGSALLFFPSAGGIPGAPFDIRTLHCGEAVAEDAE-NEKWIAQLWLRQRGYEPTAPVGNSHGDASDEIGRYCTSLV 462          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 217 bits (553), Expect = 4.030e-65
Identity = 115/239 (48.12%), Postives = 148/239 (61.92%), Query Frame = 1
Query:  439 FPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLKQSGRRKGGLEPTELQSATTSSQF--QQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLG-----PLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYIS 1134
            F   R+LH DP+V  VD+F T  EC+  VA++   +  +          QS T       + QRTSTTWFH Y   P+L+AKAS LLG+D+  +WEEPQTVRYR  E+F WHLDAL PS+  A  GGQR AT++VYL D+   +GG+T FRDLG     PL+V PKKG  L+FFP+ GG    PFD R LHAGE V   S+  +K+IAQ W  +  Y P+ P G++H AA   I+ Y +
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESE-DDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKYCN 263          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.300e-64
Identity = 115/237 (48.52%), Postives = 147/237 (62.03%), Query Frame = 1
Query:  439 FPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLKQSGRRKGGLEPTEL-QSATTSSQF--QQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLG-----PLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIAD 1125
            F   R+LH DP++  +D+F TP EC+ Y+++ T      +     P E+ QS T       + QRTSTTWFH Y     L+AKAS LLG+    +WEEPQTVRYR  E+F WHLDAL PSE     GGQR AT+LVYL D+    GG+T FRDLG     PL+V+PKKG  L+FFP+ GG    PFD R LHAGE V   S   +K+IAQ W  +  Y P+ P G+SHEAA + +++
Sbjct:   57 FTKFRILHTDPMLLSIDDFLTPTECDTYISL-TSNPKYDKNANTAPMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSDESD-DDKWIAQLWLREHVYTPTAPPGNSHEAAVEAVSE 291          
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Match: A0A7S4QXQ4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA)

HSP 1 Score: 217 bits (553), Expect = 7.070e-64
Identity = 115/239 (48.12%), Postives = 148/239 (61.92%), Query Frame = 1
Query:  439 FPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLKQSGRRKGGLEPTELQSATTSSQF--QQQRTSTTWFHAYASAPELIAKASLLLGVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYLTDMDATAGGATAFRDLG-----PLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHAGEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYIS 1134
            F   R+LH DP+V  VD+F T  EC+  VA++   +  +          QS T       + QRTSTTWFH Y   P+L+AKAS LLG+D+  +WEEPQTVRYR  E+F WHLDAL PS+  A  GGQR AT++VYL D+   +GG+T FRDLG     PL+V PKKG  L+FFP+ GG    PFD R LHAGE V   S+  +K+IAQ W  +  Y P+ P G++H AA   I+ Y +
Sbjct:  123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESE-DDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKYCN 360          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig205.6175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGF5_9PHAE1.610e-17271.83Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
D7G1H9_ECTSI1.810e-7451.59Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5L0Y5_9PHAE7.300e-7138.64Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KCF3_9STRA1.490e-7051.27Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2UAB3_9STRA9.290e-6950.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0SVE6_THAOC1.020e-6550.63Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KB24_9STRA2.170e-6548.08Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1ZRX7_9STRA4.030e-6548.12Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2N1B0_9STRA1.300e-6448.52Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4QXQ4_9STRA7.070e-6448.12Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig205contigL-elsbetiae_contig205:16617..18499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score491.9
Seed ortholog evalue2.6e-136
Seed eggNOG ortholog2880.D8LRR7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1170
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig205.6175.1prot_L-elsbetiae_contig205.6175.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig205 16617..18406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815845.2884603-CDS-L-elsbetiae_contig205:16616..169521622815845.2884603-CDS-L-elsbetiae_contig205:16616..16952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 16617..16952 -
1691683141.7276974-CDS-L-elsbetiae_contig205:16616..169521691683141.7276974-CDS-L-elsbetiae_contig205:16616..16952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 16617..16952 -
1622815845.3000765-CDS-L-elsbetiae_contig205:17169..176191622815845.3000765-CDS-L-elsbetiae_contig205:17169..17619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 17170..17619 -
1691683141.7384758-CDS-L-elsbetiae_contig205:17169..176191691683141.7384758-CDS-L-elsbetiae_contig205:17169..17619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 17170..17619 -
1622815845.3101053-CDS-L-elsbetiae_contig205:18115..184061622815845.3101053-CDS-L-elsbetiae_contig205:18115..18406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 18116..18406 -
1691683141.748315-CDS-L-elsbetiae_contig205:18115..184061691683141.748315-CDS-L-elsbetiae_contig205:18115..18406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 18116..18406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815845.3223608-UTR-L-elsbetiae_contig205:18406..184991622815845.3223608-UTR-L-elsbetiae_contig205:18406..18499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 18407..18499 -
1691683141.756484-UTR-L-elsbetiae_contig205:18406..184991691683141.756484-UTR-L-elsbetiae_contig205:18406..18499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 18407..18499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig205.6175.1

>prot_L-elsbetiae_contig205.6175.1 ID=prot_L-elsbetiae_contig205.6175.1|Name=mRNA_L-elsbetiae_contig205.6175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=359bp
MWHPILGYVVITPMVAKGFGVHMMAKGFGNQSDRKQKPLSSNVIIQPPPL
TPEQPNTRVGAQGGGLPEDDFSQFPPLTPEQQNTLVGAQGGKGMPPEVLD
RIRERHGFERFDDKLFPGIRLLHADPVVFEVDNFFTPQECNAYVAMSTLK
QSGRRKGGLEPTELQSATTSSQFQQQRTSTTWFHAYASAPELIAKASLLL
GVDDHRKWEEPQTVRYRPGERFNWHLDALPPSECGASRGGQRTATVLVYL
TDMDATAGGATAFRDLGPLRVRPKKGKCLIFFPSFGGEAGAPFDSRVLHA
GEVVGKGSKAKEKYIAQFWCHKKPYPPSVPEGSSHEAAEQPIADYISRFV
GAGAEPAE*
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mRNA from alignment at L-elsbetiae_contig205:16617..18499-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig205.6175.1 ID=mRNA_L-elsbetiae_contig205.6175.1|Name=mRNA_L-elsbetiae_contig205.6175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1883bp|location=Sequence derived from alignment at L-elsbetiae_contig205:16617..18499- (Laminarionema elsbetiae ELsaHSoW15)
TGTTATGGGCAGCGAATCAGTAAAGCTGTGAGCTGTGAAGCTGTGAAGCT GTGAAGCTGTGAAGCTGTGAAGCTGTGAAGCTGTGAAGAGATTATGTGGC ATCCGATTCTGGGTTACGTGGTGATTACTCCGATGGTGGCGAAGGGCTTC GGAGTGCACATGATGGCAAAGGGCTTCGGCAACCAGAGTGATCGAAAGCA GAAACCTCTGTCCTCCAACGTCATCATCCAGCCTCCACCTCTAACCCCAG AGCAGCCAAATACCCGAGTCGGGGCGCAAGGAGGGGGGCTGCCAGAAGAC GATTTCTCTCAGTTCCCACCTCTCACCCCAGAGCAGCAAAATACCCTAGT CGGGGCGCAAGGGGGGAAGGGCATGCCTCCTGAGGTCAGTTCCGAAAGAC GCACTACTTACTACATGCTACTGTTGATCGTGGTACGCAGTTGAATACCA TATCGTGATAGATACATAAAAGCAAGTAGGTACTGCCCTACATATCGCTG TTTTGATCCATGGCGTATGCCTCTCACCTCATCAGAGCATCCGTGCATGT GTTGGGTGTGATGGGGTAGTTTTGACTGCATGGTGCACTTTGAGTATGTA TATGGAAAAGGTTTGCAACCTTTAGATCTATCTACGGCTCTAATTTTTTT TCTAATTTGTTCCTCCCATTATTGGCGGAATATTCGTCGTCTGCCCCACT GGCCCCCATACTCCACTAAACGACTAGCTAGACGACCCACCCGGGGTCAC ACTACATGCACACGCCGGTCACACTACCCCGGGCGTGCTTCACTTGGTAG ATTACGCACCTAAATACCGTGGAATATACATAGAAGTAATGTCTAAATGT CAGCCTCCGCGTCCAACCTGTAAATTCCAGGTGCTGGATCGGATTAGAGA ACGGCACGGCTTCGAACGCTTCGACGACAAGTTATTCCCGGGAATTCGTC TTCTACATGCCGATCCAGTGGTGTTTGAGGTGGACAATTTTTTTACGCCT CAAGAATGTAACGCTTACGTCGCGATGTCCACGCTCAAACAATCGGGGCG GCGAAAAGGCGGCCTCGAGCCGACGGAGCTGCAAAGCGCAACCACCAGCT CGCAGTTCCAGCAGCAACGGACCTCAACCACGTGGTTCCATGCCTACGCG TCGGCCCCCGAGCTGATCGCGAAAGCTTCGTTGCTGCTGGGAGTTGATGA CCACCGCAAATGGGAGGAGCCTCAGACGGTTCGCTATCGGCCCGGCGAGA GGTTCAATTGGCACCTGGATGCGCTTCCTCCCAGTGAATGCGGAGCTAGC AGAGGCGGCCAACGAACAGCTACCGTCCTCGTAAGCGATGAAACTTGAAC GCGGTACTGTTTTGCTGACAAGAATTCTGTAATCCATCCACAGTAGTATT CAAACATGCCGTGTTCGTCCTTACCAAAACTGAAACTTGTGTCCGAGTCC AACATTTACCTGAAAACGTGAGTCCTATAAATTAGCAATGTAGACTAGGT GACATTTTCCCAATTTGTTGATAATGTGCTGTCGGGGTCTGAGACAGGTG TACCTGACCGACATGGACGCAACTGCTGGCGGCGCTACCGCGTTTCGGGA TCTCGGGCCTCTGCGTGTACGGCCAAAGAAGGGAAAGTGCTTGATATTTT TTCCCTCTTTCGGTGGAGAAGCAGGCGCCCCATTTGACAGTAGAGTTCTG CACGCGGGAGAGGTTGTAGGCAAAGGAAGCAAGGCTAAGGAGAAATACAT CGCGCAATTTTGGTGTCACAAAAAGCCTTACCCACCGTCTGTACCGGAGG GATCTTCCCACGAGGCAGCCGAACAACCTATTGCCGATTATATCAGCCGC TTCGTGGGGGCAGGAGCGGAACCGGCGGAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig205:16617..18499-

>mRNA_L-elsbetiae_contig205.6175.1 ID=mRNA_L-elsbetiae_contig205.6175.1|Name=mRNA_L-elsbetiae_contig205.6175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2154bp|location=Sequence derived from alignment at L-elsbetiae_contig205:16617..18499- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCATCCGATTCTGGGTTACGTGGTGATTACTCCGATGGTGGCGAA
GGGCTTCGGAGTGCACATGATGGCAAAGGGCTTCGGCAACCAGAGTGATC
GAAAGCAGAAACCTCTGTCCTCCAACGTCATCATCCAGCCTCCACCTCTA
ACCCCAGAGCAGCCAAATACCCGAGTCGGGGCGCAAGGAGGGGGGCTGCC
AGAAGACGATTTCTCTCAGTTCCCACCTCTCACCCCAGAGCAGCAAAATA
CCCTAGTCGGGGCGCAAGGGGGGAAGGGCATGCCTCCTGAGATGTGGCAT
CCGATTCTGGGTTACGTGGTGATTACTCCGATGGTGGCGAAGGGCTTCGG
AGTGCACATGATGGCAAAGGGCTTCGGCAACCAGAGTGATCGAAAGCAGA
AACCTCTGTCCTCCAACGTCATCATCCAGCCTCCACCTCTAACCCCAGAG
CAGCCAAATACCCGAGTCGGGGCGCAAGGAGGGGGGCTGCCAGAAGACGA
TTTCTCTCAGTTCCCACCTCTCACCCCAGAGCAGCAAAATACCCTAGTCG
GGGCGCAAGGGGGGAAGGGCATGCCTCCTGAGGTGCTGGATCGGATTAGA
GAACGGCACGGCTTCGAACGCTTCGACGACAAGTTATTCCCGGGAATTCG
TCTTCTACATGCCGATCCAGTGGTGTTTGAGGTGGACAATTTTTTTACGC
CTCAAGAATGTAACGCTTACGTCGCGATGTCCACGCTCAAACAATCGGGG
CGGCGAAAAGGCGGCCTCGAGCCGACGGAGCTGCAAAGCGCAACCACCAG
CTCGCAGTTCCAGCAGCAACGGACCTCAACCACGTGGTTCCATGCCTACG
CGTCGGCCCCCGAGCTGATCGCGAAAGCTTCGTTGCTGCTGGGAGTTGAT
GACCACCGCAAATGGGAGGAGCCTCAGACGGTTCGCTATCGGCCCGGCGA
GAGGTTCAATTGGCACCTGGATGCGCTTCCTCCCAGTGAATGCGGAGCTA
GCAGAGGCGGCCAACGAACAGCTACCGTCCTCGTGCTGGATCGGATTAGA
GAACGGCACGGCTTCGAACGCTTCGACGACAAGTTATTCCCGGGAATTCG
TCTTCTACATGCCGATCCAGTGGTGTTTGAGGTGGACAATTTTTTTACGC
CTCAAGAATGTAACGCTTACGTCGCGATGTCCACGCTCAAACAATCGGGG
CGGCGAAAAGGCGGCCTCGAGCCGACGGAGCTGCAAAGCGCAACCACCAG
CTCGCAGTTCCAGCAGCAACGGACCTCAACCACGTGGTTCCATGCCTACG
CGTCGGCCCCCGAGCTGATCGCGAAAGCTTCGTTGCTGCTGGGAGTTGAT
GACCACCGCAAATGGGAGGAGCCTCAGACGGTTCGCTATCGGCCCGGCGA
GAGGTTCAATTGGCACCTGGATGCGCTTCCTCCCAGTGAATGCGGAGCTA
GCAGAGGCGGCCAACGAACAGCTACCGTCCTCGTGTACCTGACCGACATG
GACGCAACTGCTGGCGGCGCTACCGCGTTTCGGGATCTCGGGCCTCTGCG
TGTACGGCCAAAGAAGGGAAAGTGCTTGATATTTTTTCCCTCTTTCGGTG
GAGAAGCAGGCGCCCCATTTGACAGTAGAGTTCTGCACGCGGGAGAGGTT
GTAGGCAAAGGAAGCAAGGCTAAGGAGAAATACATCGCGCAATTTTGGTG
TCACAAAAAGCCTTACCCACCGTCTGTACCGGAGGGATCTTCCCACGAGG
CAGCCGAACAACCTATTGCCGATTATATCAGCCGCTTCGTGGGGGCAGGA
GCGGAACCGGCGGAATGAGTGTACCTGACCGACATGGACGCAACTGCTGG
CGGCGCTACCGCGTTTCGGGATCTCGGGCCTCTGCGTGTACGGCCAAAGA
AGGGAAAGTGCTTGATATTTTTTCCCTCTTTCGGTGGAGAAGCAGGCGCC
CCATTTGACAGTAGAGTTCTGCACGCGGGAGAGGTTGTAGGCAAAGGAAG
CAAGGCTAAGGAGAAATACATCGCGCAATTTTGGTGTCACAAAAAGCCTT
ACCCACCGTCTGTACCGGAGGGATCTTCCCACGAGGCAGCCGAACAACCT
ATTGCCGATTATATCAGCCGCTTCGTGGGGGCAGGAGCGGAACCGGCGGA
ATGA
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