mRNA_L-elsbetiae_contig2042.6152.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2042.6152.1
Unique NamemRNA_L-elsbetiae_contig2042.6152.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2042.6152.1 vs. uniprot
Match: D7FXZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ6_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.540e-51
Identity = 139/247 (56.28%), Postives = 160/247 (64.78%), Query Frame = 3 
Query:   54 EPLDGEN-GSYRSDGEGDEYDKSTT------DGNEEPA-----------VVLAP--FPMSEERESLGFLRATRRLALPGVGFDEGKDDGSVVAVAALDLFGLLLVSSATGVLVYGTESLSSAAFGAAGXXXXXXXXDPAAAPSGPVVPARADVALGGRPSCMVVSEDNLRVAVALGDKILVFDAATLAGGSDI---PLETLSLPAAP-------PPRALSWGRARSRD-HHLLLVVRGDKKAVVARV 701
            EPLDG++ G     G  DEYD S+T      DG+EE A              AP   P SE RESLGFLRA+R+LALPG GFD   DDG VVA+AALD FGLLLVSSATG+LVY  E LSSAAFG  G XXXXXXXDPA+      VP RADVAL GRPS MV S DNLRVA+A+G+K+LV D A+L  G+     P+ T++L +         PPRALSWGR  S D   LLLVVR D+ A VAR+
Sbjct:   10 EPLDGDDYGGSGDHGYDDEYDDSSTADGNSLDGDEEAAGTGSAANGGSSSAAAPVTLPESEYRESLGFLRASRKLALPGTGFD-AADDGRVVALAALDRFGLLLVSSATGILVYAIEDLSSAAFGQGGQXXXXXXXDPASP-----VPVRADVALAGRPSRMVASRDNLRVAIAVGNKVLVLDTASLVNGAAAAAAPVATVALSSPDAGDSGDLPPRALSWGRKSSGDGDDLLLVVRADRSAAVARI 250
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2042.6152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXZ6_ECTSI1.540e-5156.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2042contigL-elsbetiae_contig2042:12178..17903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size715
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2042.6152.1prot_L-elsbetiae_contig2042.6152.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2042 12204..17903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.910034-UTR-L-elsbetiae_contig2042:12177..122031622815842.910034-UTR-L-elsbetiae_contig2042:12177..12203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2042 12178..12203 +
1691683140.038442-UTR-L-elsbetiae_contig2042:12177..122031691683140.038442-UTR-L-elsbetiae_contig2042:12177..12203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2042 12178..12203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.9263844-CDS-L-elsbetiae_contig2042:12203..124981622815842.9263844-CDS-L-elsbetiae_contig2042:12203..12498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2042 12204..12498 +
1691683140.0486202-CDS-L-elsbetiae_contig2042:12203..124981691683140.0486202-CDS-L-elsbetiae_contig2042:12203..12498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2042 12204..12498 +
1622815842.9369736-CDS-L-elsbetiae_contig2042:16049..162551622815842.9369736-CDS-L-elsbetiae_contig2042:16049..16255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2042 16050..16255 +
1691683140.05982-CDS-L-elsbetiae_contig2042:16049..162551691683140.05982-CDS-L-elsbetiae_contig2042:16049..16255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2042 16050..16255 +
1622815842.9485073-CDS-L-elsbetiae_contig2042:17717..179031622815842.9485073-CDS-L-elsbetiae_contig2042:17717..17903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2042 17718..17903 +
1691683140.068248-CDS-L-elsbetiae_contig2042:17717..179031691683140.068248-CDS-L-elsbetiae_contig2042:17717..17903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2042 17718..17903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2042.6152.1

>prot_L-elsbetiae_contig2042.6152.1 ID=prot_L-elsbetiae_contig2042.6152.1|Name=mRNA_L-elsbetiae_contig2042.6152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
MATLGGDGGEPLDGENGSYRSDGEGDEYDKSTTDGNEEPAVVLAPFPMSE
ERESLGFLRATRRLALPGVGFDEGKDDGSVVAVAALDLFGLLLVSSATGV
LVYGTESLSSAAFGAAGQQQQQQRQDPAAAPSGPVVPARADVALGGRPSC
MVVSEDNLRVAVALGDKILVFDAATLAGGSDIPLETLSLPAAPPPRALSW
GRARSRDHHLLLVVRGDKKAVVARVPGGG
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mRNA from alignment at L-elsbetiae_contig2042:12178..17903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2042.6152.1 ID=mRNA_L-elsbetiae_contig2042.6152.1|Name=mRNA_L-elsbetiae_contig2042.6152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5726bp|location=Sequence derived from alignment at L-elsbetiae_contig2042:12178..17903+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCAGGCCGCTCGGAACAAGGAGATGGCAACGCTAGGAGGGGACGGG
GGTGAGCCTCTGGATGGGGAGAACGGTTCGTACAGAAGCGATGGCGAGGG
TGACGAGTACGACAAAAGCACCACCGATGGAAACGAGGAGCCCGCCGTAG
TCCTGGCCCCGTTCCCGATGAGCGAAGAACGGGAGAGCCTGGGATTCCTG
CGTGCCACAAGGAGGCTGGCGCTGCCGGGGGTGGGATTTGACGAAGGGAA
AGATGACGGGAGTGTAGTTGCGGTTGCTGCTCTGGATCTGTTCGGCTTGC
TGCTGGTTTCCTCGGCCACAGGTTCGGTGCATTGTTGTGTATTGTACACA
GTTTTGAAAAGGGACGTTCACCGCCGTAGATGAGACCGCCGGGGGCGCAC
GGGTACCCGCAGCGCCCGGTTTCATATCTCCGGGAGCGCTGCTGTTTTGC
CTACAACCATGGACTGCTCATGAACTGCCGATGTTGCGCTTCGAGTTAGT
TGTTTTTATTTGCCTGCAGTATGGCTTATCTTGCCTTCGGAAACAAACTC
ACCACCTAGTTAGTACCCGCGGGGGGAGGCGATACAAACGGCCATATCCG
AGGCCGCACACGATAAACATAATTCTGCCCAGCTCCACGGTACAGGCGTA
CTTCCTGCAGAGGCCCATTGCCGATTTCTCTGTCCACCGCCTGCCCTCCC
ACCCGCGGTGGTACAGCAATTTCATTGTAAACTCCTGGTGGAGTAGAATC
TTGGAGGCTACGAGATACATCGTACTGGTACACACCGCAGAGGGGGTCCA
ACCCCCCCCCTCCTATGTGACCCCGGTCGGGTCGTCTAGCTAGAGTAGAA
GTGGAGGATGGGGGCCAGAGGGGCAGACGACAAGGTCCAATAATGGGCAG
ACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCAGTAGAGGGCT
CCACCCCACCCCTCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCCATA
TAGTCGTAGTGGAGTATGTGGGCCAGTGGGGCAGACAACGAATATGCCAA
TAATGGGAGGAGAATAAAAGAGAAGAAAAGAAAACATAGTCTATCGAAGT
ATCGTACAACACAGACTGGAGCGGGTTTCAATTTTTGCCGATGGCATCGA
CGGCAGAGCGTGCGACGCCGTGCAACCTCCGGAGAGAGAGAGACAAATAA
CCCAGGGATTCTACAGATGCAGCGCGCCGTGGGGGGTACACGTCGGTGTT
TCATGCCCGCTCTACGTACTCCCACACAGCTGCATGTTGCACCAACGTTG
GTTGTTGTATTATACCATATTTTTGTTTTATTTTTCTCCGCGGCGTCGAG
TGTGTGCTTTGTTTTGTGACCACGGGCCCTCAAGGATGTTGTGGACTAGA
GAGCTAATGTGAGAAACAACAACAACAATAACAACAACAACAACAACAGC
TGCATGTTGTACCAACGTAAACTTTGGTGAAATAGGCATATATACACTGG
TGTCAACCGTCAAGTGAGTACTTACTCACCGTAGTCATGCGAGTGATCGC
ACCCCCCCGGACCGATTGTCAAAGCTCGATTACTCCTTCACGAAGAGGGC
GCCTGCCAACACCAAACGGCACGTTTTTATGACAGATCTCGACGTGATCG
TGCCAATGCCCCACCCTTTTCGGTGCCGGCACCCCCCTTCGTCAAGGCGC
AATCGAGCCCTGAAAATCGGTACGGGGGGGGGTGCGATGACTCGCATGAT
CACGGTACTTGCGAGCGGCGTCCAAACACAAGCGCTGGTGTAAAAAGCTC
ACATGCACCAGGAGCTACAAAAGCCTAGGTTGAAGTTGGAGGTAGACGCG
AAACAGAAGGCTCACGCTAGGTTTCCCGGCCCCTTGGCTAAACCACGGCG
CTACATATAGACCTGACGCACAGCCTGCCTGTAACCTAAAATCCTCACCC
CAACCGTAGTAACTCCGTAACCCCAACCCACACCCCAGGCTAGGCTGGTG
TGCCGGGTTTAGTCCTGGGTCGCTTTGCCGAGCTCCTGGTGCATATAAGC
TTTGGCACCAGGGCTGGTGTATGCATGCCCTGGCGGTACTATCTACCTGG
CGTCCTTTTTTTCGCCTGGTCGCACGCCGCGAGGGTGAAAGTTAACTCAG
GGACAGGAACGCAGTGTCGAACATCGATAGCAAACAGAGGGCCGGAATGC
GAATGGCAGGCAGAGCGTTAGTTGCGCCTCGCGATGGAGGGGGGGGGTGC
CTGCCCCGCGCCTACCGTTGGCAGCGGTGATTCACGGACCCCCCGTAGAC
CATCAGCAAGGGGCCTCCAGAATGCAGGGTAGACACCACAGCCCCCCCCC
CCTAAATTATGGGCTTATCGATGTTTTGTTTTGTATAGGAATTAGTGTGT
ATGGCGTCGTCAGGGCCCTATATGGTGTCGTCAGGACCCACCGACCCTCG
GATTTATTGGAGGAGGGGGGGTGGTAACAAGCGTCACGCGTACGACCATA
CCAAATCCTATATAATAAGATCCCCCCCCCCTTGATTCTGGCTATGGGTG
TGACATATATAAATAAAACAGCCTAAAAAAAGCAGCCCCGGGCGAGAAGA
AACGCGATCCCGCTTTTGAACTCTGGTCCATACGTCGCTTCCGGACTACC
TCCAAGAACATCGATTTTCTGTAGGGTCCCCGTGAGAGTCAACCTCCAAT
GCTTCGCTTTATATGTCATACCCATAGATTCTGGGCTTATCGATGTTTTA
TAGCTGTGGTGCCAGCCCTGCAATCCGGGAGGCCCCTTGCCCCCAGAGCA
GCAGTGCATGGTCGACGTTTTTGTTTGCAACAATCGATACCCCGGACTGT
TTTGACGGGCTCCATCCGAGAAGCAGAGCCCGAAATCGTGAGAAGAAGCC
CCAAGACGTTTTTTCAAGGAGAGGTCGTTGGGTGTGTGTTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTATGCGTGC
GTGCGTGCGTGGGTGCGTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGGGT
CTGTGTCTTGTGTCTGTGTCTGTGTCTTGTGTCTGTGTCTGTGTCTGTGT
CTGTGTCTGTGTGTGCGCATGCATGTTCCCGCCCGCGCGACGCGTGAGCG
ACCGGAACAACGTGCCGTCCTGGCCATGGTTGTGCGCGTGTTTTCCTCCA
CTGGGGGGGAATTTGTGTCCCCGCGGGCAAAAAAAGTAAGTTGCCGTAGG
TGTGACTCAAGATACCACCCCCCCCCCCCCCCCCCCTCCCCAGCCTTCGG
CACCCCCCCCCACCCCCACGACGAACGCGCCCACCCCCCAACCCCCCCCT
CCGGCCTCNNNNNNNNNNGGGGAATTTGTGTCCCCCCGGGCAAAAAAAGA
AAGTGGCCGGAGGGGTGTCCCAACATCCCCCCCCCCCCCCCCCCCCCTGG
ACCGACTTTTAGAGCTCCAACACTCCGTAACGAAGAGGGTGCCAGCACCA
AACGACACCTTTTCGGACAGCGCTCGACTAGATCTTTCCAACGCCACCCA
CCCCCTTTCGGCACTAGATATTTGTAGCGCTCTTGTTGCTGGGGAGGAAG
TCGAGCTTTGAAAACCGGTCCAGGGGGGTGGATGTGGTATCTTGTATAAC
ATACACGGTAGTGTGTGTGCCCACAAATACGCCGTACTCCGCGGTTTACG
TTCGATGTTCCTGCTTGCTTCGCCCACTACGGTTTCACGGCTTCTCGTCC
TCCATCCCTTACGGCAAGAGGGCTAACCCCCCCCCCCCCCCCCCCCCCCC
GCCCGCCCCTTTGTGTGCTCTTGGGGACACGATGACGCCTAAATAATATG
CGACGTGTGTAACTACACACAGGGGTCTTGGTGTACGGCACGGAAAGCCT
CTCGTCCGCCGCGTTCGGGGCCGCCGGGCAACAACAGCAGCAGCAGCGGC
AAGATCCGGCGGCGGCGCCCTCTGGCCCCGTCGTCCCCGCCCGCGCCGAT
GTGGCCCTGGGCGGACGGCCGTCGTGCATGGTGGTGTCGGAAGACAACTT
GCGGGTCGCGGTTGCCCTCGGAGACAAGGTGTGTGGGTCCGGCGGGCGTT
GCTTGCGGCACGCGCGGGGGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGT
TGTTGACGTGTTTGCTCTGTTTTGGTCGAGGGCGTGTTACTTATTACTGG
CCGGCCTTTTTTTGATGGGCGCGTCAAGCTTGCGACGCCCCGCCGTGCCG
CGGAGTTTATGTCAACACGTTTTCACCGCGCCACGACACCCGCGGCTTTC
CGATGTGTGCGTTTTGTGTCGGGTTGTCTTCCTTCTCGCGCCCGTCCGCC
CGCCCGCCCCCTACTACTGTATTGTACGGCGAATTCGTTCATTGTTTTTA
AGCTCCAACACCTCCGCGGCAAAAGCAGTTACGATCAAAAGGGCCGCGTT
GACCCCCCCCCCCCCACCCACCCGCCCACCCACCCCAGTGCTCCACACAC
CCAACCCAACCCAACCCAACCCAACCCAACCCAACCCAACCCACCCCAGT
GCCCCGCACAGCCCAACCCCACCCAACCCAACCCAACGTGCTCAAGTCAC
AATGTACTTATTAGTTGTATTTCTAACAATATCTGGATAGGCGGCCGACA
AGACCGAGAATATTGGACCTCCTCGGAAGGCTCTCAAAGAACCAGATATA
TCTCTCGCGTGCCAGGCAGCTGTTAGCTCCATTGGCTGAACTTTTTTCGG
CGGTCGTATCATCCCTGCTGTTACCACTTCCTCAATTAGATGGAGATACT
TAATAAAAGCTTGTAAAAATTAAAATTGTCATGTATTTAGCACGTTACGC
TTCTACATACTGCTGTCCTTCGCCTCATTTGTTCCGCGGGCATGTGTGTT
TGTATGTCCCGCGTTGATTGTTGCCGAGAGTAAAGCAGACCCCGCCCCCT
TTCTGTGTCGGTCCCCACAAGCTTGCGCCGCGATGTTGCCGTTCTGCTCT
TGCCGGCGTGTGTAGTAGCCCACCGCTACTGCTGGAGGGGTGGTGACTTT
GCGTGTCATAGCTGTGGGCTGAGAGAGCTTTGTTGTAGACCGTGGTGGTC
CTGGGTGACTAACGTGTGAGCGTTTCGCGCGCTTTTGTGTGTGTGAGTGT
GTGTGTGTCTGTGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTGTGCGT
GTGCGTATGCGTGTTTTTGTGTTATATTTTCCGTCCCTGTTATGCTTCTG
GGTCGCATGCGCAGGAGTCGCCATCGCTCCGCTCCCCCATAGCTCTTGTT
TCCGACGTAAAACGCCATCGCGTGGTTATCATCTCCCCGCGCCCCGGGTA
GCAATCTAGCTTCTCCGTAGATCATCAAAACACACACACACACTTTCTTT
GCCCACCCACGCACGATTTCCTGCTCTCCCCCTGGCCCCCCCCCCCCCCC
CCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCAACACTCGCGCGT
GTGACCCCCAAATCAACGCCTCCCTTCGCAACGGTTCCAGATTCTCGTCT
TCGACGCCGCGACCCTCGCAGGAGGCAGCGACATCCCGCTGGAGACGCTG
AGCCTGCCGGCAGCGCCGCCGCCCCGCGCTCTCTCCTGGGGCCGCGCCCG
CTCCCGCGACCACCACCTCCTCCTCGTCGTGCGCGGCGACAAGAAGGCGG
TCGTCGCGCGCGTTCCCGGCGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2042:12178..17903+

>mRNA_L-elsbetiae_contig2042.6152.1 ID=mRNA_L-elsbetiae_contig2042.6152.1|Name=mRNA_L-elsbetiae_contig2042.6152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig2042:12178..17903+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAACGCTAGGAGGGGACGGGGGTGAGCCTCTGGATGGGGAGAACGG
TTCGTACAGAAGCGATGGCGAGGGTGACGAGTACGACAAAAGCACCACCG
ATGGAAACGAGGAGCCCGCCGTAGTCCTGGCCCCGTTCCCGATGAGCGAA
GAACGGGAGAGCCTGGGATTCCTGCGTGCCACAAGGAGGCTGGCGCTGCC
GGGGGTGGGATTTGACGAAGGGAAAGATGACGGGAGTGTAGTTGCGGTTG
CTGCTCTGGATCTGTTCGGCTTGCTGCTGGTTTCCTCGGCCACAGATGGC
AACGCTAGGAGGGGACGGGGGTGAGCCTCTGGATGGGGAGAACGGTTCGT
ACAGAAGCGATGGCGAGGGTGACGAGTACGACAAAAGCACCACCGATGGA
AACGAGGAGCCCGCCGTAGTCCTGGCCCCGTTCCCGATGAGCGAAGAACG
GGAGAGCCTGGGATTCCTGCGTGCCACAAGGAGGCTGGCGCTGCCGGGGG
TGGGATTTGACGAAGGGAAAGATGACGGGAGTGTAGTTGCGGTTGCTGCT
CTGGATCTGTTCGGCTTGCTGCTGGTTTCCTCGGCCACAGGGGTCTTGGT
GTACGGCACGGAAAGCCTCTCGTCCGCCGCGTTCGGGGCCGCCGGGCAAC
AACAGCAGCAGCAGCGGCAAGATCCGGCGGCGGCGCCCTCTGGCCCCGTC
GTCCCCGCCCGCGCCGATGTGGCCCTGGGCGGACGGCCGTCGTGCATGGT
GGTGTCGGAAGACAACTTGCGGGTCGCGGTTGCCCTCGGAGACAAGGGGT
CTTGGTGTACGGCACGGAAAGCCTCTCGTCCGCCGCGTTCGGGGCCGCCG
GGCAACAACAGCAGCAGCAGCGGCAAGATCCGGCGGCGGCGCCCTCTGGC
CCCGTCGTCCCCGCCCGCGCCGATGTGGCCCTGGGCGGACGGCCGTCGTG
CATGGTGGTGTCGGAAGACAACTTGCGGGTCGCGGTTGCCCTCGGAGACA
AGATTCTCGTCTTCGACGCCGCGACCCTCGCAGGAGGCAGCGACATCCCG
CTGGAGACGCTGAGCCTGCCGGCAGCGCCGCCGCCCCGCGCTCTCTCCTG
GGGCCGCGCCCGCTCCCGCGACCACCACCTCCTCCTCGTCGTGCGCGGCG
ACAAGAAGGCGGTCGTCGCGCGCGTTCCCGGCGGCGGCATTCTCGTCTTC
GACGCCGCGACCCTCGCAGGAGGCAGCGACATCCCGCTGGAGACGCTGAG
CCTGCCGGCAGCGCCGCCGCCCCGCGCTCTCTCCTGGGGCCGCGCCCGCT
CCCGCGACCACCACCTCCTCCTCGTCGTGCGCGGCGACAAGAAGGCGGTC
GTCGCGCGCGTTCCCGGCGGCGGC
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